Wall clock time and date at job start Tue Mar 31 2020 16:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00140 * 2 1 4 4 N 1.46900 * 109.46954 * 125.00727 * 3 2 1 5 5 C 1.46904 * 111.00114 * 301.43232 * 4 3 2 6 6 C 1.50697 * 109.47086 * 298.41171 * 5 4 3 7 7 H 1.07999 * 120.00151 * 3.83753 * 6 5 4 8 8 C 1.37877 * 120.00066 * 183.83435 * 6 5 4 9 9 N 1.31516 * 120.00149 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00148 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46550 * 60.00473 * 10 8 6 12 12 H 1.48497 * 109.47045 * 179.97438 * 10 8 6 13 13 H 1.48491 * 109.47235 * 300.00364 * 10 8 6 14 14 C 1.46903 * 111.00274 * 65.38852 * 4 3 2 15 15 H 1.08996 * 109.46597 * 306.67660 * 14 4 3 16 16 C 1.52993 * 109.47037 * 186.67461 * 14 4 3 17 17 C 1.50698 * 109.46754 * 66.67486 * 14 4 3 18 18 O 1.21274 * 120.00600 * 19.76930 * 17 14 4 19 19 N 1.34777 * 119.99736 * 199.76902 * 17 14 4 20 20 C 1.39320 * 120.00179 * 175.54178 * 19 17 14 21 21 C 1.39209 * 119.89869 * 36.85354 * 20 19 17 22 22 C 1.37079 * 120.10505 * 180.27497 * 21 20 19 23 23 C 1.40057 * 119.89312 * 359.45749 * 22 21 20 24 24 C 1.46853 * 120.10341 * 180.27472 * 23 22 21 25 25 C 1.50703 * 119.99580 * 5.28384 * 24 23 22 26 26 O 1.21285 * 120.00327 * 185.28935 * 24 23 22 27 27 C 1.40064 * 119.80327 * 0.51758 * 23 22 21 28 28 C 1.37081 * 119.88976 * 359.75655 * 27 23 22 29 29 H 1.08003 * 119.99548 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.00233 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.00025 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47010 * 5.00806 * 3 2 1 33 33 H 1.08996 * 109.47503 * 245.00724 * 3 2 1 34 34 H 1.08998 * 109.46961 * 58.41036 * 5 4 3 35 35 H 1.09000 * 109.47031 * 178.41510 * 5 4 3 36 36 H 0.97000 * 120.00401 * 179.97438 * 9 8 6 37 37 H 1.08996 * 109.47740 * 59.99923 * 16 14 4 38 38 H 1.09003 * 109.47331 * 180.02562 * 16 14 4 39 39 H 1.09001 * 109.47135 * 299.99682 * 16 14 4 40 40 H 0.97005 * 120.00167 * 355.54640 * 19 17 14 41 41 H 1.08004 * 119.94697 * 0.02562 * 21 20 19 42 42 H 1.07997 * 120.05799 * 179.72440 * 22 21 20 43 43 H 1.09000 * 109.46902 * 5.87221 * 25 24 23 44 44 H 1.08998 * 109.46876 * 125.86901 * 25 24 23 45 45 H 1.09000 * 109.47418 * 245.86831 * 25 24 23 46 46 H 1.07993 * 120.05124 * 179.73018 * 27 23 22 47 47 H 1.08004 * 119.94506 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9965 1.3318 1.1344 5 6 2.2820 1.1683 2.4076 6 6 1.3155 2.3098 2.5914 7 1 1.1944 3.0460 1.8105 8 6 0.5857 2.4144 3.7565 9 7 0.7334 1.5182 4.7076 10 14 -0.6119 3.8298 3.9846 11 1 -1.6439 3.7816 2.9180 12 1 -1.2672 3.7146 5.3122 13 1 0.1229 5.1177 3.9048 14 6 4.0406 0.3098 0.9817 15 1 3.5760 -0.6617 0.8131 16 6 4.8905 0.2552 2.2526 17 6 4.9166 0.6585 -0.1939 18 8 4.9407 1.7951 -0.6162 19 7 5.6733 -0.2928 -0.7761 20 6 6.4114 0.0068 -1.9190 21 6 7.0101 1.2567 -2.0506 22 6 7.7326 1.5580 -3.1759 23 6 7.8775 0.6019 -4.1891 24 6 8.6556 0.9177 -5.3939 25 6 9.3980 2.2257 -5.4900 26 8 8.7008 0.1259 -6.3115 27 6 7.2739 -0.6545 -4.0522 28 6 6.5486 -0.9448 -2.9258 29 1 -0.5399 0.9354 0.0004 30 1 -0.5400 -0.9352 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6212 1.4027 -0.9314 34 1 1.7340 0.2262 2.3983 35 1 2.9990 1.1636 3.2285 36 1 0.2202 1.5920 5.5275 37 1 4.2570 0.0030 3.1029 38 1 5.6656 -0.5028 2.1391 39 1 5.3551 1.2267 2.4211 40 1 5.7039 -1.1861 -0.3993 41 1 6.9017 1.9917 -1.2666 42 1 8.1929 2.5295 -3.2792 43 1 9.3270 2.7544 -4.5395 44 1 10.4456 2.0327 -5.7210 45 1 8.9583 2.8359 -6.2790 46 1 7.3795 -1.3931 -4.8329 47 1 6.0824 -1.9132 -2.8195 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292254384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:01 Heat of formation + Delta-G solvation = -27.295707 kcal Electronic energy + Delta-G solvation = -27840.175175 eV Core-core repulsion = 23988.419773 eV Total energy + Delta-G solvation = -3851.755402 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.88679 -40.75805 -39.44929 -38.35594 -35.87962 -34.78176 -34.47788 -32.69199 -31.95208 -31.24896 -29.64022 -29.20166 -26.22858 -25.82559 -24.36500 -23.88486 -22.55611 -21.55548 -20.88654 -20.26171 -18.86314 -18.40108 -18.08874 -17.62123 -17.00857 -16.71079 -16.46717 -16.23064 -15.97097 -15.70403 -15.59743 -15.37513 -15.03840 -14.90346 -14.47886 -14.23060 -14.00180 -13.92388 -13.73961 -13.57027 -13.31745 -13.00708 -12.98321 -12.90086 -12.77560 -12.63411 -12.48703 -12.24762 -12.21123 -12.10324 -11.85057 -11.38071 -11.21724 -10.86835 -10.69779 -10.50329 -10.18881 -10.04986 -9.25872 -8.93514 -8.15854 -6.21409 -0.44040 0.40208 1.23176 1.41236 1.43077 1.44664 1.50531 1.61420 1.90988 2.43167 2.79935 3.15303 3.17316 3.32026 3.61867 3.82083 3.92256 4.00482 4.06308 4.12597 4.16125 4.27749 4.35077 4.42522 4.46747 4.48105 4.65965 4.68152 4.75279 4.84964 4.96152 5.00528 5.05684 5.09023 5.20317 5.23467 5.26384 5.28815 5.35201 5.39956 5.43670 5.67222 5.70517 5.90212 5.91160 6.07550 6.30924 6.36200 6.53954 6.65583 6.91208 7.10709 7.45812 8.94675 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.021697 B = 0.002415 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.178189 B =11592.596004 C =11716.270544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.192 4.192 3 C 0.096 3.904 4 N -0.524 5.524 5 C 0.210 3.790 6 C -0.516 4.516 7 H 0.052 0.948 8 C 0.011 3.989 9 N -0.927 5.927 10 Si 0.954 3.046 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.274 1.274 14 C 0.064 3.936 15 H 0.077 0.923 16 C -0.139 4.139 17 C 0.528 3.472 18 O -0.528 6.528 19 N -0.663 5.663 20 C 0.177 3.823 21 C -0.155 4.155 22 C -0.044 4.044 23 C -0.209 4.209 24 C 0.400 3.600 25 C -0.200 4.200 26 O -0.506 6.506 27 C -0.049 4.049 28 C -0.155 4.155 29 H 0.085 0.915 30 H 0.110 0.890 31 H 0.114 0.886 32 H 0.062 0.938 33 H 0.066 0.934 34 H -0.021 1.021 35 H 0.025 0.975 36 H 0.263 0.737 37 H 0.064 0.936 38 H 0.097 0.903 39 H 0.052 0.948 40 H 0.429 0.571 41 H 0.128 0.872 42 H 0.162 0.838 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.140 0.860 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.090 -6.178 -14.588 21.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.212 4.212 3 C -0.032 4.032 4 N -0.248 5.248 5 C 0.085 3.915 6 C -0.554 4.554 7 H 0.070 0.930 8 C -0.187 4.187 9 N -0.568 5.568 10 Si 0.779 3.221 11 H -0.196 1.196 12 H -0.208 1.208 13 H -0.200 1.200 14 C -0.048 4.048 15 H 0.095 0.905 16 C -0.196 4.196 17 C 0.315 3.685 18 O -0.402 6.402 19 N -0.311 5.311 20 C 0.081 3.919 21 C -0.175 4.175 22 C -0.063 4.063 23 C -0.211 4.211 24 C 0.282 3.718 25 C -0.256 4.256 26 O -0.386 6.386 27 C -0.067 4.067 28 C -0.175 4.175 29 H 0.104 0.896 30 H 0.128 0.872 31 H 0.132 0.868 32 H 0.080 0.920 33 H 0.084 0.916 34 H -0.003 1.003 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.115 0.885 39 H 0.071 0.929 40 H 0.268 0.732 41 H 0.146 0.854 42 H 0.179 0.821 43 H 0.121 0.879 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.157 0.843 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 15.253 -5.323 -15.091 22.108 hybrid contribution -1.387 -0.428 0.815 1.665 sum 13.867 -5.751 -14.276 20.716 Atomic orbital electron populations 1.23846 0.96048 1.01812 0.99415 1.23524 0.97079 0.99299 1.01269 1.21120 0.94144 0.94835 0.93088 1.62085 1.13009 1.46217 1.03453 1.19473 0.91802 0.94495 0.85725 1.21348 1.22039 1.10389 1.01642 0.93006 1.25650 0.98883 0.98563 0.95632 1.70026 1.42841 1.36595 1.07330 0.85674 0.79208 0.79912 0.77263 1.19639 1.20827 1.19972 1.21606 0.93429 0.95689 0.94104 0.90521 1.21845 0.99605 1.02935 0.95233 1.20938 0.79364 0.84701 0.83480 1.90680 1.64995 1.21469 1.63064 1.43413 1.44984 1.15898 1.26754 1.18241 0.91194 0.95194 0.87278 1.21209 0.98705 0.97226 1.00372 1.21486 0.94641 0.99371 0.90772 1.20677 1.05660 0.96496 0.98227 1.22874 0.76763 0.88342 0.83809 1.22289 1.02177 0.94838 1.06291 1.90521 1.57320 1.50956 1.39798 1.21244 0.92886 0.95929 0.96689 1.20982 1.02966 1.01110 0.92465 0.89623 0.87224 0.86812 0.91953 0.91566 1.00327 0.95732 0.92853 0.91752 0.88481 0.92907 0.73212 0.85435 0.82057 0.87896 0.87798 0.87634 0.84261 0.82597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.89 14.32 67.78 0.97 -4.92 16 2 C -0.19 -6.67 7.54 25.64 0.19 -6.48 16 3 C 0.10 3.79 5.25 85.56 0.45 4.23 16 4 N -0.52 -21.87 4.25 -884.49 -3.76 -25.63 16 5 C 0.21 10.41 3.96 85.56 0.34 10.75 16 6 C -0.52 -28.42 8.59 25.60 0.22 -28.20 16 7 H 0.05 2.90 6.64 -2.91 -0.02 2.88 16 8 C 0.01 0.62 5.46 84.65 0.46 1.08 16 9 N -0.93 -53.61 13.29 21.45 0.28 -53.33 16 10 Si 0.95 44.04 29.54 68.60 2.03 46.07 16 11 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 14 C 0.06 2.01 2.36 44.17 0.10 2.11 16 15 H 0.08 2.12 6.37 -2.39 -0.02 2.10 16 16 C -0.14 -4.04 8.58 71.98 0.62 -3.42 16 17 C 0.53 15.43 6.06 87.66 0.53 15.96 16 18 O -0.53 -19.53 13.10 -3.01 -0.04 -19.57 16 19 N -0.66 -13.59 5.30 -303.47 -1.61 -15.20 16 20 C 0.18 3.76 6.26 38.42 0.24 4.00 16 21 C -0.15 -3.55 8.63 22.23 0.19 -3.36 16 22 C -0.04 -0.80 9.37 22.44 0.21 -0.59 16 23 C -0.21 -3.97 5.87 -20.14 -0.12 -4.08 16 24 C 0.40 7.38 7.21 27.94 0.20 7.58 16 25 C -0.20 -2.03 10.16 71.24 0.72 -1.30 16 26 O -0.51 -12.87 17.09 -3.05 -0.05 -12.92 16 27 C -0.05 -0.92 9.57 22.44 0.21 -0.70 16 28 C -0.16 -2.71 9.92 22.23 0.22 -2.49 16 29 H 0.09 3.11 7.84 -2.91 -0.02 3.08 16 30 H 0.11 3.16 8.06 -2.91 -0.02 3.13 16 31 H 0.11 3.42 6.80 -2.91 -0.02 3.40 16 32 H 0.06 2.76 6.19 -2.39 -0.01 2.75 16 33 H 0.07 2.53 6.56 -2.39 -0.02 2.52 16 34 H -0.02 -1.09 6.99 -2.39 -0.02 -1.11 16 35 H 0.02 1.30 5.84 -2.39 -0.01 1.29 16 36 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 37 H 0.06 2.15 6.19 -2.39 -0.01 2.14 16 38 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.43 5.62 8.82 -92.70 -0.82 4.80 16 41 H 0.13 3.44 6.34 -2.91 -0.02 3.42 16 42 H 0.16 1.92 6.02 -2.91 -0.02 1.90 16 43 H 0.10 0.66 5.69 -2.39 -0.01 0.64 16 44 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.14 2.46 7.65 -2.91 -0.02 2.44 16 47 H 0.16 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -72.27 383.92 2.80 -69.47 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.18 Total: 20.95 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 5.77 Total: -9.83 kcal Atomic # 7 Polarization: -89.07 SS G_CDS: -5.09 Total: -94.16 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.09 Total: -32.50 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -72.27 2.80 -69.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292254384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.173 kcal (2) G-P(sol) polarization free energy of solvation -72.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds