Wall clock time and date at job start Tue Mar 31 2020 16:17:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00015 * 2 1 4 4 N 1.46898 * 109.47365 * 121.38696 * 3 2 1 5 5 C 1.46904 * 110.99926 * 73.34263 * 4 3 2 6 6 C 1.50700 * 109.47110 * 285.91034 * 5 4 3 7 7 H 1.08000 * 120.00090 * 354.57925 * 6 5 4 8 8 C 1.37876 * 119.99595 * 174.57286 * 6 5 4 9 9 N 1.31507 * 120.00294 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99725 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47290 * 89.99931 * 10 8 6 12 12 H 1.48499 * 109.47037 * 209.99916 * 10 8 6 13 13 H 1.48505 * 109.46960 * 329.99750 * 10 8 6 14 14 C 1.46901 * 111.00224 * 197.29813 * 4 3 2 15 15 H 1.08996 * 109.47238 * 186.04468 * 14 4 3 16 16 C 1.52996 * 109.46847 * 306.04926 * 14 4 3 17 17 C 1.50705 * 109.46901 * 66.04660 * 14 4 3 18 18 O 1.21272 * 119.99915 * 359.97438 * 17 14 4 19 19 N 1.34777 * 119.99609 * 180.02562 * 17 14 4 20 20 C 1.39317 * 119.99633 * 185.57440 * 19 17 14 21 21 C 1.39208 * 119.90213 * 35.15872 * 20 19 17 22 22 C 1.37088 * 120.10348 * 180.29957 * 21 20 19 23 23 C 1.40056 * 119.89209 * 359.45416 * 22 21 20 24 24 C 1.46847 * 120.09698 * 180.27210 * 23 22 21 25 25 C 1.50701 * 120.00151 * 0.27559 * 24 23 22 26 26 O 1.21302 * 120.00140 * 180.27170 * 24 23 22 27 27 C 1.40055 * 119.80436 * 0.54993 * 23 22 21 28 28 C 1.37087 * 119.89409 * 359.72305 * 27 23 22 29 29 H 1.07996 * 120.00262 * 0.02562 * 1 2 3 30 30 H 1.08007 * 119.99903 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.00044 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46948 * 1.38578 * 3 2 1 33 33 H 1.08997 * 109.47134 * 241.39286 * 3 2 1 34 34 H 1.08998 * 109.46711 * 45.91328 * 5 4 3 35 35 H 1.09004 * 109.46760 * 165.90983 * 5 4 3 36 36 H 0.97001 * 119.99780 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.47207 * 299.99360 * 16 14 4 38 38 H 1.08996 * 109.47575 * 59.99749 * 16 14 4 39 39 H 1.09005 * 109.47261 * 180.02562 * 16 14 4 40 40 H 0.97001 * 120.00286 * 5.56768 * 19 17 14 41 41 H 1.08001 * 119.94827 * 0.02742 * 21 20 19 42 42 H 1.07994 * 120.05099 * 179.73170 * 22 21 20 43 43 H 1.08996 * 109.47115 * 60.00018 * 25 24 23 44 44 H 1.09001 * 109.47033 * 179.97438 * 25 24 23 45 45 H 1.08992 * 109.47052 * 299.99817 * 25 24 23 46 46 H 1.07995 * 120.05166 * 179.70361 * 27 23 22 47 47 H 1.08002 * 119.94691 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9330 1.3685 1.1823 5 6 4.0898 0.4753 1.0336 6 6 3.6463 -0.9543 1.2083 7 1 2.6285 -1.1726 1.4959 8 6 4.5401 -1.9835 1.0009 9 7 5.7793 -1.7176 0.6502 10 14 3.9902 -3.7557 1.2169 11 1 3.4743 -4.2748 -0.0752 12 1 5.1431 -4.5815 1.6572 13 1 2.9160 -3.8194 2.2403 14 6 3.3636 2.7481 1.4458 15 1 4.0897 2.7532 2.2586 16 6 4.0049 3.3317 0.1852 17 6 2.1694 3.5815 1.8338 18 8 1.0682 3.0762 1.8853 19 7 2.3252 4.8887 2.1227 20 6 1.2447 5.6317 2.5931 21 6 0.3040 5.0360 3.4287 22 6 -0.7641 5.7615 3.8890 23 6 -0.9020 7.1073 3.5265 24 6 -2.0413 7.8904 4.0219 25 6 -3.0609 7.2477 4.9267 26 8 -2.1617 9.0545 3.7029 27 6 0.0467 7.7025 2.6856 28 6 1.1086 6.9676 2.2255 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3554 2.1334 0.0249 33 1 2.6713 1.3737 -0.9022 34 1 4.5221 0.6030 0.0411 35 1 4.8366 0.7191 1.7893 36 1 6.4079 -2.4418 0.5039 37 1 4.8686 2.7290 -0.0954 38 1 3.2787 3.3267 -0.6276 39 1 4.3248 4.3552 0.3808 40 1 3.1897 5.3122 2.0031 41 1 0.4136 3.9994 3.7112 42 1 -1.4957 5.2973 4.5337 43 1 -2.5703 6.8940 5.8334 44 1 -3.8256 7.9787 5.1892 45 1 -3.5239 6.4059 4.4120 46 1 -0.0583 8.7386 2.3997 47 1 1.8405 7.4256 1.5767 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292254386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:06 Heat of formation + Delta-G solvation = -6.919713 kcal Electronic energy + Delta-G solvation = -27871.014905 eV Core-core repulsion = 24020.143072 eV Total energy + Delta-G solvation = -3850.871833 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.87638 -39.82576 -38.38446 -36.92761 -34.87717 -33.19456 -32.73175 -31.85594 -30.94905 -29.98843 -28.76702 -26.97188 -25.39611 -24.48232 -23.16782 -23.02712 -21.16092 -20.09252 -19.76827 -18.92381 -18.05995 -17.12337 -16.80378 -16.19322 -15.71765 -15.24869 -15.17195 -14.86573 -14.81821 -14.60717 -14.47657 -14.20921 -13.91013 -13.61489 -13.17070 -13.08854 -12.94740 -12.81434 -12.46766 -12.41594 -12.33235 -12.18808 -11.76561 -11.66575 -11.47008 -11.22181 -11.05207 -10.78145 -10.60721 -10.44457 -10.26142 -10.03252 -9.88423 -9.36351 -9.29174 -9.18463 -8.50076 -8.42934 -8.32702 -7.37632 -6.09450 -4.08426 0.39542 1.20391 2.09638 2.71920 2.88793 3.15650 3.28145 3.35161 3.40079 3.62370 3.85666 4.36797 4.50015 4.71641 4.73057 4.82346 4.83872 5.05228 5.06470 5.10549 5.21560 5.25240 5.26992 5.31740 5.37275 5.59888 5.65220 5.78439 5.80142 5.90043 6.01009 6.08105 6.11057 6.14737 6.19268 6.27453 6.29544 6.39159 6.70269 6.76031 7.06009 7.19845 7.24383 7.29552 7.58011 7.64695 7.79254 7.96979 8.05408 8.17710 8.43336 8.98116 9.53864 11.00974 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.002494 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.147794 B =11226.245885 C =11825.937190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.111 4.111 3 C 0.092 3.908 4 N -0.510 5.510 5 C 0.193 3.807 6 C -0.505 4.505 7 H 0.075 0.925 8 C 0.055 3.945 9 N -0.898 5.898 10 Si 0.893 3.107 11 H -0.280 1.280 12 H -0.287 1.287 13 H -0.272 1.272 14 C 0.067 3.933 15 H 0.109 0.891 16 C -0.184 4.184 17 C 0.518 3.482 18 O -0.486 6.486 19 N -0.682 5.682 20 C 0.197 3.803 21 C -0.138 4.138 22 C -0.047 4.047 23 C -0.204 4.204 24 C 0.399 3.601 25 C -0.201 4.201 26 O -0.468 6.468 27 C -0.038 4.038 28 C -0.167 4.167 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.138 0.862 32 H 0.066 0.934 33 H 0.031 0.969 34 H 0.003 0.997 35 H 0.026 0.974 36 H 0.261 0.739 37 H 0.078 0.922 38 H 0.061 0.939 39 H 0.055 0.945 40 H 0.412 0.588 41 H 0.143 0.857 42 H 0.134 0.866 43 H 0.094 0.906 44 H 0.082 0.918 45 H 0.094 0.906 46 H 0.134 0.866 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.554 17.250 4.439 19.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.129 4.129 3 C -0.035 4.035 4 N -0.234 5.234 5 C 0.069 3.931 6 C -0.544 4.544 7 H 0.093 0.907 8 C -0.146 4.146 9 N -0.538 5.538 10 Si 0.721 3.279 11 H -0.206 1.206 12 H -0.213 1.213 13 H -0.196 1.196 14 C -0.046 4.046 15 H 0.126 0.874 16 C -0.243 4.243 17 C 0.306 3.694 18 O -0.357 6.357 19 N -0.329 5.329 20 C 0.101 3.899 21 C -0.158 4.158 22 C -0.066 4.066 23 C -0.205 4.205 24 C 0.278 3.722 25 C -0.258 4.258 26 O -0.345 6.345 27 C -0.057 4.057 28 C -0.188 4.188 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.155 0.845 32 H 0.085 0.915 33 H 0.049 0.951 34 H 0.021 0.979 35 H 0.044 0.956 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.248 0.752 41 H 0.161 0.839 42 H 0.152 0.848 43 H 0.112 0.888 44 H 0.101 0.899 45 H 0.113 0.887 46 H 0.152 0.848 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -9.458 17.117 4.663 20.104 hybrid contribution 0.891 -0.656 -0.622 1.269 sum -8.567 16.461 4.041 18.992 Atomic orbital electron populations 1.23546 0.96097 1.00183 1.06639 1.23511 0.95279 1.00082 0.94072 1.21150 0.95186 0.96243 0.90953 1.62125 1.20867 1.02230 1.38211 1.19854 0.86198 0.91178 0.95907 1.21313 0.97710 0.89831 1.45507 0.90739 1.24976 0.94882 0.99254 0.95482 1.69940 1.03847 1.32364 1.47632 0.86567 0.78306 0.84520 0.78553 1.20639 1.21256 1.19632 1.21678 0.92845 0.91191 0.98900 0.87350 1.22481 1.02395 1.00904 0.98504 1.21251 0.91781 0.80656 0.75738 1.90712 1.26435 1.70582 1.47962 1.43785 1.12304 1.10812 1.65988 1.18081 0.89087 0.90906 0.91863 1.21082 0.95422 1.01741 0.97568 1.21191 0.96551 0.92203 0.96685 1.20421 0.99400 0.95556 1.05170 1.22393 0.84450 0.87133 0.78197 1.22255 0.99504 1.03337 1.00738 1.90533 1.74223 1.18252 1.51519 1.21029 0.91690 0.99788 0.93196 1.20779 1.00660 0.93662 1.03685 0.89965 0.89645 0.84467 0.91541 0.95120 0.97930 0.95615 0.92915 0.90287 0.91981 0.92613 0.75192 0.83950 0.84797 0.88795 0.89861 0.88738 0.84806 0.85113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -4.20 14.32 29.01 0.42 -3.78 16 2 C -0.11 -2.30 8.22 -36.03 -0.30 -2.59 16 3 C 0.09 1.81 3.77 -4.98 -0.02 1.79 16 4 N -0.51 -10.37 4.16 -230.91 -0.96 -11.33 16 5 C 0.19 4.61 4.12 -4.97 -0.02 4.58 16 6 C -0.51 -13.33 7.12 -34.44 -0.25 -13.57 16 7 H 0.07 1.99 5.80 -52.49 -0.30 1.69 16 8 C 0.06 1.50 5.46 -17.82 -0.10 1.40 16 9 N -0.90 -25.34 13.29 55.43 0.74 -24.60 16 10 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 14 C 0.07 1.04 2.73 -68.86 -0.19 0.85 16 15 H 0.11 1.60 7.84 -51.93 -0.41 1.19 16 16 C -0.18 -2.42 8.41 37.16 0.31 -2.11 16 17 C 0.52 7.63 6.41 -10.98 -0.07 7.56 16 18 O -0.49 -8.80 12.30 5.56 0.07 -8.73 16 19 N -0.68 -7.45 5.23 -9.85 -0.05 -7.51 16 20 C 0.20 2.23 6.24 -83.73 -0.52 1.71 16 21 C -0.14 -1.65 8.59 -39.64 -0.34 -1.99 16 22 C -0.05 -0.47 9.44 -39.32 -0.37 -0.84 16 23 C -0.20 -2.08 5.87 -105.05 -0.62 -2.70 16 24 C 0.40 3.98 7.22 -30.83 -0.22 3.76 16 25 C -0.20 -1.28 8.92 36.01 0.32 -0.96 16 26 O -0.47 -6.14 17.07 5.54 0.09 -6.04 16 27 C -0.04 -0.39 9.57 -39.32 -0.38 -0.76 16 28 C -0.17 -1.61 9.92 -39.64 -0.39 -2.01 16 29 H 0.08 1.47 7.83 -52.49 -0.41 1.06 16 30 H 0.09 1.45 8.06 -52.48 -0.42 1.03 16 31 H 0.14 3.14 5.26 -52.48 -0.28 2.86 16 32 H 0.07 1.27 5.46 -51.93 -0.28 0.99 16 33 H 0.03 0.61 6.98 -51.93 -0.36 0.24 16 34 H 0.00 0.07 7.15 -51.93 -0.37 -0.30 16 35 H 0.03 0.64 7.77 -51.93 -0.40 0.24 16 36 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 37 H 0.08 1.17 7.12 -51.93 -0.37 0.80 16 38 H 0.06 0.85 6.72 -51.93 -0.35 0.50 16 39 H 0.05 0.53 7.45 -51.93 -0.39 0.14 16 40 H 0.41 3.18 8.09 -40.82 -0.33 2.85 16 41 H 0.14 1.94 6.54 -52.49 -0.34 1.60 16 42 H 0.13 0.97 7.03 -52.49 -0.37 0.60 16 43 H 0.09 0.44 8.09 -51.93 -0.42 0.02 16 44 H 0.08 0.51 8.12 -51.93 -0.42 0.09 16 45 H 0.09 0.49 8.07 -51.93 -0.42 0.07 16 46 H 0.13 1.26 7.64 -52.49 -0.40 0.86 16 47 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 382.63 15.07 5.77 5.77 Total: -1.00 -32.07 382.63 -8.71 -40.77 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: -6.61 Total: 5.39 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: -2.73 Total: -9.66 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: -0.28 Total: -43.44 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.16 Total: -14.77 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.07 -8.71 -40.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292254386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.853 kcal (2) G-P(sol) polarization free energy of solvation -32.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds