Wall clock time and date at job start Tue Mar 31 2020 16:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50699 * 120.00015 * 2 1 4 4 N 1.46898 * 109.47365 * 121.38696 * 3 2 1 5 5 C 1.46904 * 110.99926 * 73.34263 * 4 3 2 6 6 C 1.50700 * 109.47110 * 285.91034 * 5 4 3 7 7 H 1.08000 * 120.00090 * 354.57925 * 6 5 4 8 8 C 1.37876 * 119.99595 * 174.57286 * 6 5 4 9 9 N 1.31507 * 120.00294 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99725 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.47290 * 89.99931 * 10 8 6 12 12 H 1.48499 * 109.47037 * 209.99916 * 10 8 6 13 13 H 1.48505 * 109.46960 * 329.99750 * 10 8 6 14 14 C 1.46901 * 111.00224 * 197.29813 * 4 3 2 15 15 H 1.08996 * 109.47238 * 186.04468 * 14 4 3 16 16 C 1.52996 * 109.46847 * 306.04926 * 14 4 3 17 17 C 1.50705 * 109.46901 * 66.04660 * 14 4 3 18 18 O 1.21272 * 119.99915 * 359.97438 * 17 14 4 19 19 N 1.34777 * 119.99609 * 180.02562 * 17 14 4 20 20 C 1.39317 * 119.99633 * 185.57440 * 19 17 14 21 21 C 1.39208 * 119.90213 * 35.15872 * 20 19 17 22 22 C 1.37088 * 120.10348 * 180.29957 * 21 20 19 23 23 C 1.40056 * 119.89209 * 359.45416 * 22 21 20 24 24 C 1.46847 * 120.09698 * 180.27210 * 23 22 21 25 25 C 1.50701 * 120.00151 * 0.27559 * 24 23 22 26 26 O 1.21302 * 120.00140 * 180.27170 * 24 23 22 27 27 C 1.40055 * 119.80436 * 0.54993 * 23 22 21 28 28 C 1.37087 * 119.89409 * 359.72305 * 27 23 22 29 29 H 1.07996 * 120.00262 * 0.02562 * 1 2 3 30 30 H 1.08007 * 119.99903 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.00044 * 179.97438 * 2 1 3 32 32 H 1.09005 * 109.46948 * 1.38578 * 3 2 1 33 33 H 1.08997 * 109.47134 * 241.39286 * 3 2 1 34 34 H 1.08998 * 109.46711 * 45.91328 * 5 4 3 35 35 H 1.09004 * 109.46760 * 165.90983 * 5 4 3 36 36 H 0.97001 * 119.99780 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.47207 * 299.99360 * 16 14 4 38 38 H 1.08996 * 109.47575 * 59.99749 * 16 14 4 39 39 H 1.09005 * 109.47261 * 180.02562 * 16 14 4 40 40 H 0.97001 * 120.00286 * 5.56768 * 19 17 14 41 41 H 1.08001 * 119.94827 * 0.02742 * 21 20 19 42 42 H 1.07994 * 120.05099 * 179.73170 * 22 21 20 43 43 H 1.08996 * 109.47115 * 60.00018 * 25 24 23 44 44 H 1.09001 * 109.47033 * 179.97438 * 25 24 23 45 45 H 1.08992 * 109.47052 * 299.99817 * 25 24 23 46 46 H 1.07995 * 120.05166 * 179.70361 * 27 23 22 47 47 H 1.08002 * 119.94691 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9330 1.3685 1.1823 5 6 4.0898 0.4753 1.0336 6 6 3.6463 -0.9543 1.2083 7 1 2.6285 -1.1726 1.4959 8 6 4.5401 -1.9835 1.0009 9 7 5.7793 -1.7176 0.6502 10 14 3.9902 -3.7557 1.2169 11 1 3.4743 -4.2748 -0.0752 12 1 5.1431 -4.5815 1.6572 13 1 2.9160 -3.8194 2.2403 14 6 3.3636 2.7481 1.4458 15 1 4.0897 2.7532 2.2586 16 6 4.0049 3.3317 0.1852 17 6 2.1694 3.5815 1.8338 18 8 1.0682 3.0762 1.8853 19 7 2.3252 4.8887 2.1227 20 6 1.2447 5.6317 2.5931 21 6 0.3040 5.0360 3.4287 22 6 -0.7641 5.7615 3.8890 23 6 -0.9020 7.1073 3.5265 24 6 -2.0413 7.8904 4.0219 25 6 -3.0609 7.2477 4.9267 26 8 -2.1617 9.0545 3.7029 27 6 0.0467 7.7025 2.6856 28 6 1.1086 6.9676 2.2255 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5400 -0.9354 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3554 2.1334 0.0249 33 1 2.6713 1.3737 -0.9022 34 1 4.5221 0.6030 0.0411 35 1 4.8366 0.7191 1.7893 36 1 6.4079 -2.4418 0.5039 37 1 4.8686 2.7290 -0.0954 38 1 3.2787 3.3267 -0.6276 39 1 4.3248 4.3552 0.3808 40 1 3.1897 5.3122 2.0031 41 1 0.4136 3.9994 3.7112 42 1 -1.4957 5.2973 4.5337 43 1 -2.5703 6.8940 5.8334 44 1 -3.8256 7.9787 5.1892 45 1 -3.5239 6.4059 4.4120 46 1 -0.0583 8.7386 2.3997 47 1 1.8405 7.4256 1.5767 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292254386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:05 Heat of formation + Delta-G solvation = -26.974256 kcal Electronic energy + Delta-G solvation = -27871.884535 eV Core-core repulsion = 24020.143072 eV Total energy + Delta-G solvation = -3851.741463 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.90469 -40.75466 -39.43351 -38.26139 -35.91133 -34.81518 -34.54448 -32.64712 -31.96702 -31.17692 -29.62175 -28.74379 -26.74337 -25.82088 -24.41128 -23.88071 -22.57788 -21.03311 -20.87408 -20.49791 -19.07180 -18.54541 -17.77934 -17.61845 -16.68707 -16.60018 -16.43112 -16.19615 -16.06005 -15.94545 -15.43364 -15.31823 -14.88631 -14.68075 -14.45934 -14.40786 -14.07586 -13.85903 -13.79040 -13.52918 -13.30413 -13.19228 -13.01995 -13.00024 -12.90697 -12.59111 -12.49092 -12.36673 -12.24242 -11.93130 -11.60709 -11.42726 -11.15549 -10.82218 -10.61949 -10.53116 -10.05840 -10.04007 -9.22483 -8.98780 -8.15667 -6.20351 -0.42955 0.40971 1.22580 1.41299 1.42731 1.52924 1.58727 1.67079 1.90252 2.42809 2.81657 3.16458 3.16905 3.36772 3.60128 3.82245 3.93180 4.02035 4.12655 4.18411 4.23136 4.30266 4.38194 4.49472 4.54364 4.59771 4.65487 4.66354 4.68211 4.78247 4.83916 5.01139 5.04375 5.10217 5.12539 5.21733 5.26288 5.27173 5.32443 5.36497 5.44560 5.72508 5.90340 5.98455 6.03674 6.17891 6.30520 6.33318 6.54771 6.63706 6.92055 7.10196 7.45633 8.94243 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.021125 B = 0.002494 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.147794 B =11226.245885 C =11825.937190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.143 4.143 3 C 0.103 3.897 4 N -0.525 5.525 5 C 0.211 3.789 6 C -0.511 4.511 7 H 0.068 0.932 8 C 0.007 3.993 9 N -0.931 5.931 10 Si 0.953 3.047 11 H -0.275 1.275 12 H -0.284 1.284 13 H -0.269 1.269 14 C 0.061 3.939 15 H 0.116 0.884 16 C -0.174 4.174 17 C 0.526 3.474 18 O -0.524 6.524 19 N -0.663 5.663 20 C 0.181 3.819 21 C -0.156 4.156 22 C -0.040 4.040 23 C -0.210 4.210 24 C 0.399 3.601 25 C -0.198 4.198 26 O -0.506 6.506 27 C -0.048 4.048 28 C -0.157 4.157 29 H 0.092 0.908 30 H 0.102 0.898 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.024 0.976 34 H -0.019 1.019 35 H 0.009 0.991 36 H 0.262 0.738 37 H 0.058 0.942 38 H 0.056 0.944 39 H 0.100 0.900 40 H 0.428 0.572 41 H 0.122 0.878 42 H 0.160 0.840 43 H 0.115 0.885 44 H 0.085 0.915 45 H 0.111 0.889 46 H 0.139 0.861 47 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.796 18.338 4.973 21.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.161 4.161 3 C -0.025 4.025 4 N -0.248 5.248 5 C 0.086 3.914 6 C -0.549 4.549 7 H 0.086 0.914 8 C -0.191 4.191 9 N -0.572 5.572 10 Si 0.778 3.222 11 H -0.201 1.201 12 H -0.209 1.209 13 H -0.193 1.193 14 C -0.051 4.051 15 H 0.133 0.867 16 C -0.233 4.233 17 C 0.314 3.686 18 O -0.398 6.398 19 N -0.310 5.310 20 C 0.085 3.915 21 C -0.176 4.176 22 C -0.059 4.059 23 C -0.212 4.212 24 C 0.281 3.719 25 C -0.255 4.255 26 O -0.386 6.386 27 C -0.066 4.066 28 C -0.177 4.177 29 H 0.111 0.889 30 H 0.120 0.880 31 H 0.129 0.871 32 H 0.093 0.907 33 H 0.042 0.958 34 H -0.002 1.002 35 H 0.027 0.973 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.118 0.882 40 H 0.268 0.732 41 H 0.140 0.860 42 H 0.177 0.823 43 H 0.133 0.867 44 H 0.104 0.896 45 H 0.129 0.871 46 H 0.157 0.843 47 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.689 18.246 5.208 21.778 hybrid contribution 1.204 -0.888 -0.751 1.674 sum -9.485 17.357 4.457 20.276 Atomic orbital electron populations 1.23705 0.95274 1.01416 1.03491 1.23394 0.96170 0.99452 0.97070 1.21039 0.94915 0.96108 0.90395 1.61941 1.19609 1.04676 1.38606 1.19459 0.86877 0.91177 0.93900 1.21597 0.97359 0.91331 1.44661 0.91363 1.25714 0.94954 1.03037 0.95442 1.70044 1.04795 1.33409 1.48913 0.85627 0.77881 0.80072 0.78587 1.20057 1.20936 1.19335 1.21776 0.93800 0.89225 1.00346 0.86654 1.22381 1.01167 1.02934 0.96846 1.20892 0.90619 0.81623 0.75445 1.90696 1.27463 1.71632 1.49960 1.43435 1.13256 1.09425 1.64893 1.18216 0.89212 0.91567 0.92519 1.21077 0.96686 1.01133 0.98741 1.21382 0.96278 0.91863 0.96342 1.20632 0.99656 0.95774 1.05110 1.22885 0.84670 0.86520 0.77784 1.22295 0.98677 1.03654 1.00831 1.90526 1.75117 1.19810 1.53127 1.21250 0.91913 1.00222 0.93252 1.20966 1.00809 0.92682 1.03211 0.88938 0.87999 0.87095 0.90666 0.95814 1.00164 0.97265 0.92899 0.92280 0.92474 0.88163 0.73203 0.85960 0.82263 0.86681 0.89642 0.87069 0.84282 0.82501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -7.21 14.32 67.78 0.97 -6.24 16 2 C -0.14 -5.93 8.22 25.65 0.21 -5.71 16 3 C 0.10 4.08 3.77 85.56 0.32 4.40 16 4 N -0.52 -21.65 4.16 -884.46 -3.68 -25.33 16 5 C 0.21 10.43 4.12 85.56 0.35 10.78 16 6 C -0.51 -27.65 7.12 25.60 0.18 -27.47 16 7 H 0.07 3.73 5.80 -2.91 -0.02 3.71 16 8 C 0.01 0.36 5.46 84.66 0.46 0.82 16 9 N -0.93 -53.64 13.29 21.45 0.28 -53.36 16 10 Si 0.95 43.54 29.54 68.60 2.03 45.56 16 11 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 14 C 0.06 1.87 2.73 44.17 0.12 1.99 16 15 H 0.12 3.35 7.84 -2.39 -0.02 3.33 16 16 C -0.17 -4.41 8.41 71.98 0.61 -3.80 16 17 C 0.53 14.97 6.41 87.66 0.56 15.53 16 18 O -0.52 -18.70 12.30 -3.00 -0.04 -18.73 16 19 N -0.66 -13.18 5.23 -303.46 -1.59 -14.77 16 20 C 0.18 3.76 6.24 38.42 0.24 4.00 16 21 C -0.16 -3.55 8.59 22.23 0.19 -3.36 16 22 C -0.04 -0.71 9.44 22.44 0.21 -0.50 16 23 C -0.21 -3.92 5.87 -20.14 -0.12 -4.04 16 24 C 0.40 7.31 7.22 27.94 0.20 7.51 16 25 C -0.20 -2.01 8.92 71.24 0.64 -1.37 16 26 O -0.51 -12.84 17.07 -3.10 -0.05 -12.89 16 27 C -0.05 -0.88 9.57 22.44 0.21 -0.66 16 28 C -0.16 -2.64 9.92 22.23 0.22 -2.42 16 29 H 0.09 3.14 7.83 -2.91 -0.02 3.12 16 30 H 0.10 3.27 8.06 -2.91 -0.02 3.25 16 31 H 0.11 5.21 5.26 -2.91 -0.02 5.20 16 32 H 0.08 2.85 5.46 -2.38 -0.01 2.84 16 33 H 0.02 0.96 6.98 -2.39 -0.02 0.95 16 34 H -0.02 -1.03 7.15 -2.39 -0.02 -1.04 16 35 H 0.01 0.48 7.77 -2.39 -0.02 0.46 16 36 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 37 H 0.06 1.75 7.12 -2.39 -0.02 1.74 16 38 H 0.06 1.51 6.72 -2.39 -0.02 1.49 16 39 H 0.10 1.60 7.45 -2.38 -0.02 1.58 16 40 H 0.43 5.38 8.09 -92.71 -0.75 4.63 16 41 H 0.12 3.32 6.54 -2.91 -0.02 3.30 16 42 H 0.16 1.89 7.03 -2.91 -0.02 1.86 16 43 H 0.11 0.71 8.09 -2.39 -0.02 0.69 16 44 H 0.08 0.87 8.12 -2.39 -0.02 0.85 16 45 H 0.11 0.80 8.07 -2.39 -0.02 0.78 16 46 H 0.14 2.41 7.64 -2.91 -0.02 2.39 16 47 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -71.27 382.63 2.78 -68.49 By element: Atomic # 1 Polarization: 21.32 SS G_CDS: 0.24 Total: 21.56 kcal Atomic # 6 Polarization: -16.13 SS G_CDS: 5.59 Total: -10.54 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -4.98 Total: -93.45 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -0.09 Total: -31.62 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -71.27 2.78 -68.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292254386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.516 kcal (2) G-P(sol) polarization free energy of solvation -71.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds