Wall clock time and date at job start Tue Mar 31 2020 15:45:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47208 * 2 1 4 4 C 1.50708 * 109.47070 * 119.99483 * 2 1 3 5 5 H 1.07999 * 119.99735 * 119.99703 * 4 2 1 6 6 C 1.37871 * 119.99890 * 300.00349 * 4 2 1 7 7 N 1.31510 * 120.00628 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99534 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47314 * 359.97438 * 8 6 4 10 10 H 1.48509 * 109.46864 * 120.00178 * 8 6 4 11 11 H 1.48500 * 109.46975 * 239.99706 * 8 6 4 12 12 N 1.46498 * 109.47237 * 239.99372 * 2 1 3 13 13 C 1.46499 * 120.00526 * 299.99980 * 12 2 1 14 14 C 1.34783 * 119.99719 * 120.00002 * 12 2 1 15 15 O 1.21286 * 119.99590 * 5.00425 * 14 12 2 16 16 C 1.50696 * 119.99810 * 185.00140 * 14 12 2 17 17 H 1.08999 * 109.40519 * 331.19471 * 16 14 12 18 18 C 1.53072 * 109.40093 * 91.02617 * 16 14 12 19 19 C 1.53345 * 108.42382 * 169.02497 * 18 16 14 20 20 C 1.52909 * 108.67631 * 292.46761 * 19 18 16 21 21 N 1.45756 * 110.49057 * 50.75652 * 20 19 18 22 22 C 1.39920 * 117.94904 * 160.92712 * 21 20 19 23 23 C 1.38878 * 120.07500 * 85.95320 * 22 21 20 24 24 C 1.38103 * 119.93010 * 180.25167 * 23 22 21 25 25 C 1.38286 * 120.07045 * 359.51775 * 24 23 22 26 26 C 1.38278 * 120.14293 * 0.27035 * 25 24 23 27 27 C 1.38117 * 120.06696 * 359.96378 * 26 25 24 28 28 C 1.33353 * 124.10386 * 341.20117 * 21 20 19 29 29 O 1.21285 * 118.24844 * 181.94920 * 28 21 20 30 30 H 1.08999 * 109.47354 * 60.00427 * 1 2 3 31 31 H 1.09005 * 109.47363 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47281 * 300.00160 * 1 2 3 33 33 H 0.96997 * 120.00603 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47386 * 267.73457 * 13 12 2 35 35 H 1.09002 * 109.46828 * 27.73321 * 13 12 2 36 36 H 1.08999 * 109.46808 * 147.72882 * 13 12 2 37 37 H 1.08997 * 109.67421 * 49.29095 * 18 16 14 38 38 H 1.09001 * 109.70163 * 288.77786 * 18 16 14 39 39 H 1.09004 * 109.60103 * 172.70397 * 19 18 16 40 40 H 1.09007 * 109.60087 * 52.22582 * 19 18 16 41 41 H 1.09004 * 109.30440 * 290.43947 * 20 19 18 42 42 H 1.09007 * 109.13437 * 170.95929 * 20 19 18 43 43 H 1.07996 * 120.03007 * 0.04463 * 23 22 21 44 44 H 1.08005 * 119.96749 * 179.78848 * 24 23 22 45 45 H 1.08000 * 119.92664 * 180.25770 * 25 24 23 46 46 H 1.07999 * 119.96813 * 179.97438 * 26 25 24 47 47 H 1.08003 * 120.02799 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.1454 -2.2875 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1660 -1.5865 4.8162 12 7 2.0183 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.1611 1.0957 -1.8478 16 6 3.2024 -0.7093 -3.3677 17 1 3.2491 -1.7872 -3.2125 18 6 2.1727 -0.3965 -4.4563 19 6 2.7407 -0.8520 -5.8059 20 6 3.9347 0.0355 -6.1593 21 7 4.8701 0.1004 -5.0434 22 6 6.1806 0.5123 -5.3094 23 6 6.4957 1.8648 -5.3240 24 6 7.7890 2.2682 -5.5920 25 6 8.7720 1.3267 -5.8358 26 6 8.4626 -0.0209 -5.8177 27 6 7.1700 -0.4306 -5.5551 28 6 4.5567 -0.2131 -3.7858 29 8 5.4096 -0.0862 -2.9329 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.7087 1.1615 3.4844 34 1 2.4364 -2.7372 -1.0065 35 1 0.7092 -2.3108 -0.9500 36 1 1.5844 -2.2755 -2.4995 37 1 1.9804 0.6760 -4.4823 38 1 1.2454 -0.9306 -4.2494 39 1 1.9746 -0.7580 -6.5756 40 1 3.0652 -1.8902 -5.7345 41 1 3.5808 1.0400 -6.3917 42 1 4.4419 -0.3783 -7.0310 43 1 5.7293 2.6004 -5.1293 44 1 8.0339 3.3200 -5.6069 45 1 9.7836 1.6446 -6.0410 46 1 9.2325 -0.7538 -6.0089 47 1 6.9291 -1.4834 -5.5407 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293079642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:08 Heat of formation + Delta-G solvation = -29.238867 kcal Electronic energy + Delta-G solvation = -28982.095953 eV Core-core repulsion = 25130.256289 eV Total energy + Delta-G solvation = -3851.839664 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.19813 -39.30068 -38.13863 -36.49374 -35.30178 -34.18818 -32.75005 -31.04939 -30.51668 -29.37517 -28.96456 -26.16858 -25.25461 -25.09290 -23.56776 -22.72452 -21.88430 -21.24576 -19.12124 -18.34466 -17.60561 -16.86786 -16.50568 -16.29089 -16.17263 -15.76293 -15.17479 -14.89478 -14.57202 -14.22763 -14.01225 -13.81896 -13.76291 -13.52096 -13.49883 -13.01034 -12.73503 -12.60180 -12.44983 -11.99343 -11.78948 -11.58649 -11.51574 -11.47199 -11.34805 -11.31425 -11.06827 -11.01640 -10.75912 -10.68956 -10.20747 -10.13658 -9.59222 -9.13934 -9.05166 -9.00116 -8.89363 -8.82414 -8.38877 -7.56799 -6.03018 -4.10087 1.14870 1.28787 2.66113 2.82686 3.29861 3.35637 3.38472 3.42718 3.61840 3.94827 4.43947 4.48004 4.56492 4.64589 4.67392 4.81531 4.84240 4.97695 5.12796 5.15964 5.22747 5.27021 5.30413 5.33204 5.44853 5.52925 5.54379 5.61160 5.64986 5.79629 5.88708 6.00726 6.04939 6.19564 6.29839 6.37297 6.42138 6.48438 6.76000 6.81502 6.96105 7.05932 7.33062 7.44607 7.54266 7.75405 8.04532 8.23311 8.28941 8.53135 8.87910 9.06384 9.56175 11.02540 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.003233 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.762080 B = 8659.145223 C = 9556.530742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.259 3.741 3 H 0.063 0.937 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.064 3.936 7 N -0.889 5.889 8 Si 0.898 3.102 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.590 5.590 13 C 0.084 3.916 14 C 0.524 3.476 15 O -0.535 6.535 16 C -0.125 4.125 17 H 0.120 0.880 18 C -0.112 4.112 19 C -0.132 4.132 20 C 0.116 3.884 21 N -0.572 5.572 22 C 0.142 3.858 23 C -0.106 4.106 24 C -0.113 4.113 25 C -0.119 4.119 26 C -0.115 4.115 27 C -0.109 4.109 28 C 0.538 3.462 29 O -0.510 6.510 30 H 0.011 0.989 31 H 0.031 0.969 32 H 0.094 0.906 33 H 0.262 0.738 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.125 0.875 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.722 -4.451 -22.950 24.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.159 3.841 3 H 0.081 0.919 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.322 5.322 13 C -0.060 4.060 14 C 0.309 3.691 15 O -0.411 6.411 16 C -0.149 4.149 17 H 0.138 0.862 18 C -0.150 4.150 19 C -0.170 4.170 20 C -0.006 4.006 21 N -0.304 5.304 22 C 0.052 3.948 23 C -0.125 4.125 24 C -0.132 4.132 25 C -0.137 4.137 26 C -0.134 4.134 27 C -0.129 4.129 28 C 0.326 3.674 29 O -0.383 6.383 30 H 0.030 0.970 31 H 0.050 0.950 32 H 0.113 0.887 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.094 0.906 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.143 0.857 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.215 -3.683 -22.146 23.295 hybrid contribution 0.222 -0.630 0.925 1.142 sum 6.437 -4.313 -21.221 22.592 Atomic orbital electron populations 1.22103 0.98139 0.99377 1.00866 1.18953 0.90718 0.94529 0.79914 0.91935 1.21364 1.31499 1.12941 0.90262 0.92203 1.24886 0.94978 0.94995 0.98973 1.69880 1.36640 1.22686 1.23601 0.86437 0.78555 0.79660 0.82742 1.19786 1.20897 1.20977 1.48153 1.49153 1.11483 1.23394 1.21618 1.01843 0.83357 0.99217 1.19492 0.79250 0.86549 0.83825 1.90690 1.54203 1.19117 1.77131 1.21479 0.93382 1.03317 0.96726 0.86222 1.21614 0.97731 1.03423 0.92281 1.21896 0.97194 0.99918 0.97953 1.21477 0.90069 1.00699 0.88363 1.44883 1.09407 1.68074 1.08042 1.17543 0.84617 0.92330 1.00276 1.21375 0.97258 0.95177 0.98719 1.21052 0.92571 0.99801 0.99755 1.21187 0.99288 0.93161 1.00066 1.21011 0.95877 0.96092 1.00386 1.21282 0.92908 0.99260 0.99417 1.19552 0.89517 0.77151 0.81187 1.90790 1.48842 1.50456 1.48171 0.96997 0.95043 0.88734 0.92791 0.93237 0.90452 0.93052 0.90196 0.89645 0.89054 0.90602 0.91382 0.90522 0.85738 0.85657 0.85901 0.85752 0.86050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.95 37.15 0.33 -3.15 16 2 C 0.26 6.78 2.63 -69.08 -0.18 6.60 16 3 H 0.06 1.92 6.91 -51.93 -0.36 1.56 16 4 C -0.52 -14.64 8.37 -34.44 -0.29 -14.93 16 5 H 0.06 1.68 7.65 -52.49 -0.40 1.28 16 6 C 0.06 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.89 -25.74 11.32 55.43 0.63 -25.11 16 8 Si 0.90 21.77 29.54 -169.99 -5.02 16.75 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 N -0.59 -12.94 2.75 -175.26 -0.48 -13.42 16 13 C 0.08 1.39 9.12 59.85 0.55 1.94 16 14 C 0.52 11.48 6.35 -10.98 -0.07 11.41 16 15 O -0.53 -14.30 15.38 -8.51 -0.13 -14.43 16 16 C -0.12 -1.98 1.94 -93.15 -0.18 -2.16 16 17 H 0.12 1.64 6.38 -51.93 -0.33 1.31 16 18 C -0.11 -1.28 5.25 -26.52 -0.14 -1.42 16 19 C -0.13 -1.02 6.02 -26.60 -0.16 -1.18 16 20 C 0.12 1.06 6.35 -4.49 -0.03 1.03 16 21 N -0.57 -7.85 2.85 -114.65 -0.33 -8.18 16 22 C 0.14 1.96 4.01 -83.70 -0.34 1.62 16 23 C -0.11 -1.40 9.97 -39.39 -0.39 -1.80 16 24 C -0.11 -1.25 10.04 -39.61 -0.40 -1.65 16 25 C -0.12 -1.19 10.04 -39.55 -0.40 -1.59 16 26 C -0.12 -1.20 10.04 -39.61 -0.40 -1.59 16 27 C -0.11 -1.33 9.97 -39.39 -0.39 -1.73 16 28 C 0.54 9.55 6.62 -11.88 -0.08 9.47 16 29 O -0.51 -11.68 15.78 -8.51 -0.13 -11.81 16 30 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.03 0.68 6.66 -51.93 -0.35 0.33 16 32 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 1.28 6.43 -51.93 -0.33 0.95 16 36 H 0.05 0.63 5.83 -51.93 -0.30 0.33 16 37 H 0.08 1.02 8.09 -51.93 -0.42 0.60 16 38 H 0.08 0.84 7.61 -51.93 -0.40 0.44 16 39 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 43 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 44 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 45 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 47 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 378.92 15.07 5.71 5.71 Total: -1.00 -37.15 378.92 -9.40 -46.55 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -6.99 Total: 1.36 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -2.66 Total: 2.57 kcal Atomic # 7 Polarization: -46.52 SS G_CDS: -0.18 Total: -46.70 kcal Atomic # 8 Polarization: -25.98 SS G_CDS: -0.27 Total: -26.24 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.15 -9.40 -46.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293079642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.314 kcal (2) G-P(sol) polarization free energy of solvation -37.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds