Wall clock time and date at job start Tue Mar 31 2020 15:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47208 * 2 1 4 4 C 1.50708 * 109.47070 * 119.99483 * 2 1 3 5 5 H 1.07999 * 119.99735 * 119.99703 * 4 2 1 6 6 C 1.37871 * 119.99890 * 300.00349 * 4 2 1 7 7 N 1.31510 * 120.00628 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99534 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47314 * 359.97438 * 8 6 4 10 10 H 1.48509 * 109.46864 * 120.00178 * 8 6 4 11 11 H 1.48500 * 109.46975 * 239.99706 * 8 6 4 12 12 N 1.46498 * 109.47237 * 239.99372 * 2 1 3 13 13 C 1.46499 * 120.00526 * 299.99980 * 12 2 1 14 14 C 1.34783 * 119.99719 * 120.00002 * 12 2 1 15 15 O 1.21286 * 119.99590 * 5.00425 * 14 12 2 16 16 C 1.50696 * 119.99810 * 185.00140 * 14 12 2 17 17 H 1.08999 * 109.40519 * 331.19471 * 16 14 12 18 18 C 1.53072 * 109.40093 * 91.02617 * 16 14 12 19 19 C 1.53345 * 108.42382 * 169.02497 * 18 16 14 20 20 C 1.52909 * 108.67631 * 292.46761 * 19 18 16 21 21 N 1.45756 * 110.49057 * 50.75652 * 20 19 18 22 22 C 1.39920 * 117.94904 * 160.92712 * 21 20 19 23 23 C 1.38878 * 120.07500 * 85.95320 * 22 21 20 24 24 C 1.38103 * 119.93010 * 180.25167 * 23 22 21 25 25 C 1.38286 * 120.07045 * 359.51775 * 24 23 22 26 26 C 1.38278 * 120.14293 * 0.27035 * 25 24 23 27 27 C 1.38117 * 120.06696 * 359.96378 * 26 25 24 28 28 C 1.33353 * 124.10386 * 341.20117 * 21 20 19 29 29 O 1.21285 * 118.24844 * 181.94920 * 28 21 20 30 30 H 1.08999 * 109.47354 * 60.00427 * 1 2 3 31 31 H 1.09005 * 109.47363 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47281 * 300.00160 * 1 2 3 33 33 H 0.96997 * 120.00603 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.47386 * 267.73457 * 13 12 2 35 35 H 1.09002 * 109.46828 * 27.73321 * 13 12 2 36 36 H 1.08999 * 109.46808 * 147.72882 * 13 12 2 37 37 H 1.08997 * 109.67421 * 49.29095 * 18 16 14 38 38 H 1.09001 * 109.70163 * 288.77786 * 18 16 14 39 39 H 1.09004 * 109.60103 * 172.70397 * 19 18 16 40 40 H 1.09007 * 109.60087 * 52.22582 * 19 18 16 41 41 H 1.09004 * 109.30440 * 290.43947 * 20 19 18 42 42 H 1.09007 * 109.13437 * 170.95929 * 20 19 18 43 43 H 1.07996 * 120.03007 * 0.04463 * 23 22 21 44 44 H 1.08005 * 119.96749 * 179.78848 * 24 23 22 45 45 H 1.08000 * 119.92664 * 180.25770 * 25 24 23 46 46 H 1.07999 * 119.96813 * 179.97438 * 26 25 24 47 47 H 1.08003 * 120.02799 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4827 7 7 0.9434 0.8303 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.1454 -2.2875 3.6039 10 1 3.1465 -0.1871 4.8166 11 1 1.1660 -1.5865 4.8162 12 7 2.0183 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.1611 1.0957 -1.8478 16 6 3.2024 -0.7093 -3.3677 17 1 3.2491 -1.7872 -3.2125 18 6 2.1727 -0.3965 -4.4563 19 6 2.7407 -0.8520 -5.8059 20 6 3.9347 0.0355 -6.1593 21 7 4.8701 0.1004 -5.0434 22 6 6.1806 0.5123 -5.3094 23 6 6.4957 1.8648 -5.3240 24 6 7.7890 2.2682 -5.5920 25 6 8.7720 1.3267 -5.8358 26 6 8.4626 -0.0209 -5.8177 27 6 7.1700 -0.4306 -5.5551 28 6 4.5567 -0.2131 -3.7858 29 8 5.4096 -0.0862 -2.9329 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 0.7087 1.1615 3.4844 34 1 2.4364 -2.7372 -1.0065 35 1 0.7092 -2.3108 -0.9500 36 1 1.5844 -2.2755 -2.4995 37 1 1.9804 0.6760 -4.4823 38 1 1.2454 -0.9306 -4.2494 39 1 1.9746 -0.7580 -6.5756 40 1 3.0652 -1.8902 -5.7345 41 1 3.5808 1.0400 -6.3917 42 1 4.4419 -0.3783 -7.0310 43 1 5.7293 2.6004 -5.1293 44 1 8.0339 3.3200 -5.6069 45 1 9.7836 1.6446 -6.0410 46 1 9.2325 -0.7538 -6.0089 47 1 6.9291 -1.4834 -5.5407 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293079642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:07 Heat of formation + Delta-G solvation = -52.634116 kcal Electronic energy + Delta-G solvation = -28983.110447 eV Core-core repulsion = 25130.256289 eV Total energy + Delta-G solvation = -3852.854158 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.39996 -40.69650 -39.35993 -37.64141 -37.16838 -35.40209 -34.62422 -31.93897 -31.92147 -30.59579 -30.28531 -27.67469 -27.31025 -26.21901 -24.70445 -23.61581 -23.05158 -22.65616 -20.47393 -19.70152 -18.78184 -18.50015 -18.14955 -17.70048 -17.25226 -17.08262 -16.68322 -16.09407 -15.96373 -15.76407 -15.16411 -15.08212 -14.76261 -14.67886 -14.45739 -14.41205 -14.38825 -13.95996 -13.59429 -13.48443 -13.21550 -13.01806 -12.91222 -12.75665 -12.64313 -12.55247 -12.48823 -12.29396 -12.20613 -12.19732 -12.14013 -11.90041 -11.19565 -10.88946 -10.69739 -10.51577 -10.01445 -9.92923 -9.76053 -9.37751 -8.17673 -6.33956 0.24541 0.39956 1.32067 1.36562 1.39567 1.50420 1.58259 1.93848 2.31029 2.47617 2.74660 3.09934 3.31540 3.59298 3.71383 3.76350 3.94749 4.00813 4.05338 4.13319 4.20439 4.37543 4.40581 4.48457 4.50251 4.59999 4.65439 4.73746 4.77213 4.77966 4.88725 4.93684 5.01769 5.03245 5.04060 5.06212 5.25766 5.35485 5.43847 5.49851 5.51861 5.57799 5.61075 5.64239 6.02353 6.04040 6.14377 6.23384 6.73573 6.74753 7.04640 7.27335 7.42884 8.86834 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.003233 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.762080 B = 8659.145223 C = 9556.530742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.262 3.738 3 H 0.001 0.999 4 C -0.540 4.540 5 H 0.055 0.945 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.964 3.036 9 H -0.268 1.268 10 H -0.287 1.287 11 H -0.267 1.267 12 N -0.596 5.596 13 C 0.076 3.924 14 C 0.512 3.488 15 O -0.599 6.599 16 C -0.113 4.113 17 H 0.148 0.852 18 C -0.109 4.109 19 C -0.119 4.119 20 C 0.103 3.897 21 N -0.560 5.560 22 C 0.113 3.887 23 C -0.134 4.134 24 C -0.118 4.118 25 C -0.117 4.117 26 C -0.114 4.114 27 C -0.121 4.121 28 C 0.531 3.469 29 O -0.579 6.579 30 H 0.026 0.974 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.265 0.735 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.104 0.896 37 H 0.058 0.942 38 H 0.111 0.889 39 H 0.130 0.870 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.105 0.895 43 H 0.109 0.891 44 H 0.145 0.855 45 H 0.156 0.844 46 H 0.155 0.845 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.863 -7.201 -25.502 27.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.160 3.840 3 H 0.019 0.981 4 C -0.578 4.578 5 H 0.073 0.927 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.789 3.211 9 H -0.192 1.192 10 H -0.213 1.213 11 H -0.192 1.192 12 N -0.326 5.326 13 C -0.065 4.065 14 C 0.300 3.700 15 O -0.481 6.481 16 C -0.137 4.137 17 H 0.165 0.835 18 C -0.147 4.147 19 C -0.156 4.156 20 C -0.017 4.017 21 N -0.290 5.290 22 C 0.024 3.976 23 C -0.153 4.153 24 C -0.136 4.136 25 C -0.135 4.135 26 C -0.132 4.132 27 C -0.140 4.140 28 C 0.319 3.681 29 O -0.457 6.457 30 H 0.045 0.955 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.077 0.923 38 H 0.130 0.870 39 H 0.149 0.851 40 H 0.113 0.887 41 H 0.089 0.911 42 H 0.123 0.877 43 H 0.127 0.873 44 H 0.163 0.837 45 H 0.173 0.827 46 H 0.172 0.828 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.316 -6.478 -24.783 26.383 hybrid contribution 0.253 0.309 1.656 1.703 sum 6.570 -6.169 -23.128 24.822 Atomic orbital electron populations 1.21851 0.96221 1.00524 1.00195 1.18549 0.92080 0.91815 0.81574 0.98076 1.21609 1.31779 1.12990 0.91448 0.92670 1.25727 0.95081 0.95683 1.01984 1.70017 1.37358 1.23792 1.24391 0.85425 0.78363 0.78416 0.78917 1.19245 1.21303 1.19241 1.48167 1.48990 1.13440 1.22041 1.21948 1.01825 0.79933 1.02829 1.20543 0.78014 0.86005 0.85446 1.90649 1.56425 1.22203 1.78811 1.21465 0.93818 1.03805 0.94601 0.83472 1.21724 0.97492 1.02757 0.92733 1.21947 0.97099 1.00192 0.96357 1.21907 0.90309 1.01855 0.87673 1.44954 1.10347 1.65853 1.07828 1.17851 0.85207 0.92953 1.01627 1.21457 0.98243 0.95051 1.00565 1.21354 0.91900 1.01323 0.99065 1.21600 1.00423 0.92852 0.98608 1.21425 0.95775 0.97058 0.98933 1.21471 0.93393 0.99399 0.99783 1.19934 0.89485 0.76743 0.81900 1.90746 1.50769 1.53860 1.50370 0.95538 0.92781 0.91472 0.92580 0.93263 0.90084 0.87810 0.92291 0.87035 0.85147 0.88694 0.91060 0.87685 0.87268 0.83741 0.82679 0.82766 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 8.95 71.98 0.64 -5.62 16 2 C 0.26 14.31 2.63 44.25 0.12 14.43 16 3 H 0.00 0.08 6.91 -2.39 -0.02 0.07 16 4 C -0.54 -31.15 8.37 25.60 0.21 -30.94 16 5 H 0.06 3.15 7.65 -2.91 -0.02 3.13 16 6 C 0.01 0.84 5.30 84.65 0.45 1.29 16 7 N -0.92 -54.72 11.32 21.44 0.24 -54.48 16 8 Si 0.96 45.25 29.54 68.60 2.03 47.27 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 12 N -0.60 -26.54 2.75 -826.79 -2.28 -28.81 16 13 C 0.08 2.40 9.12 127.77 1.17 3.56 16 14 C 0.51 23.26 6.35 87.65 0.56 23.82 16 15 O -0.60 -34.59 15.38 10.40 0.16 -34.43 16 16 C -0.11 -3.52 1.94 -12.43 -0.02 -3.54 16 17 H 0.15 3.67 6.38 -2.39 -0.02 3.65 16 18 C -0.11 -2.21 5.25 30.73 0.16 -2.05 16 19 C -0.12 -1.33 6.02 30.68 0.18 -1.15 16 20 C 0.10 1.64 6.35 86.49 0.55 2.19 16 21 N -0.56 -15.28 2.85 -635.83 -1.81 -17.09 16 22 C 0.11 3.15 4.01 38.15 0.15 3.31 16 23 C -0.13 -3.70 9.97 22.39 0.22 -3.48 16 24 C -0.12 -2.56 10.04 22.25 0.22 -2.34 16 25 C -0.12 -2.12 10.04 22.29 0.22 -1.89 16 26 C -0.11 -2.13 10.04 22.25 0.22 -1.91 16 27 C -0.12 -2.85 9.97 22.39 0.22 -2.63 16 28 C 0.53 19.25 6.62 87.71 0.58 19.83 16 29 O -0.58 -28.06 15.78 10.40 0.16 -27.90 16 30 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 2.32 6.66 -2.38 -0.02 2.30 16 32 H 0.07 3.64 6.07 -2.39 -0.01 3.62 16 33 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 34 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.08 2.49 6.43 -2.39 -0.02 2.47 16 36 H 0.10 2.14 5.83 -2.39 -0.01 2.12 16 37 H 0.06 1.46 8.09 -2.39 -0.02 1.44 16 38 H 0.11 1.70 7.61 -2.39 -0.02 1.69 16 39 H 0.13 0.59 8.14 -2.38 -0.02 0.57 16 40 H 0.09 0.80 8.12 -2.38 -0.02 0.78 16 41 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 42 H 0.10 1.14 8.09 -2.38 -0.02 1.12 16 43 H 0.11 3.19 8.06 -2.91 -0.02 3.17 16 44 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 45 H 0.16 1.76 8.06 -2.91 -0.02 1.73 16 46 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 47 H 0.13 2.71 8.06 -2.91 -0.02 2.68 16 Total: -1.00 -90.68 378.92 5.34 -85.34 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 0.97 Total: 17.22 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: 5.87 Total: 12.88 kcal Atomic # 7 Polarization: -96.55 SS G_CDS: -3.84 Total: -100.39 kcal Atomic # 8 Polarization: -62.65 SS G_CDS: 0.32 Total: -62.33 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -90.68 5.34 -85.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293079642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.702 kcal (2) G-P(sol) polarization free energy of solvation -90.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds