Wall clock time and date at job start Tue Mar 31 2020 15:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.47450 * 2 1 4 4 C 1.50707 * 109.46912 * 240.00080 * 2 1 3 5 5 H 1.07997 * 119.99967 * 240.00253 * 4 2 1 6 6 C 1.37879 * 119.99785 * 60.00241 * 4 2 1 7 7 N 1.31505 * 120.00266 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99743 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47102 * 89.99705 * 8 6 4 10 10 H 1.48499 * 109.46840 * 210.00125 * 8 6 4 11 11 H 1.48501 * 109.46776 * 329.99771 * 8 6 4 12 12 N 1.46491 * 109.47090 * 120.00288 * 2 1 3 13 13 C 1.46505 * 120.00049 * 53.25855 * 12 2 1 14 14 C 1.34784 * 119.99988 * 233.25744 * 12 2 1 15 15 O 1.21284 * 119.99700 * 182.84948 * 14 12 2 16 16 C 1.50699 * 119.99682 * 2.85049 * 14 12 2 17 17 H 1.08997 * 109.40317 * 310.03424 * 16 14 12 18 18 C 1.53073 * 109.39901 * 190.20542 * 16 14 12 19 19 C 1.53336 * 108.42397 * 190.97326 * 18 16 14 20 20 C 1.52921 * 108.67528 * 67.53121 * 19 18 16 21 21 N 1.45747 * 110.48948 * 309.24577 * 20 19 18 22 22 C 1.39921 * 117.94679 * 199.07682 * 21 20 19 23 23 C 1.38872 * 120.07276 * 303.71975 * 22 21 20 24 24 C 1.38110 * 119.93105 * 179.79185 * 23 22 21 25 25 C 1.38275 * 120.07144 * 0.49210 * 24 23 22 26 26 C 1.38286 * 120.14006 * 359.73890 * 25 24 23 27 27 C 1.38107 * 120.07065 * 0.02893 * 26 25 24 28 28 C 1.33352 * 124.10550 * 19.07602 * 21 20 19 29 29 O 1.21283 * 118.24892 * 177.80203 * 28 21 20 30 30 H 1.08994 * 109.47856 * 183.99621 * 1 2 3 31 31 H 1.09005 * 109.47180 * 303.99893 * 1 2 3 32 32 H 1.09003 * 109.47151 * 63.99147 * 1 2 3 33 33 H 0.97004 * 120.00141 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.47151 * 274.92748 * 13 12 2 35 35 H 1.08998 * 109.47177 * 34.93125 * 13 12 2 36 36 H 1.09010 * 109.46839 * 154.92991 * 13 12 2 37 37 H 1.09002 * 109.67097 * 71.23779 * 18 16 14 38 38 H 1.09003 * 109.67080 * 310.70919 * 18 16 14 39 39 H 1.09009 * 109.60300 * 187.28606 * 19 18 16 40 40 H 1.08995 * 109.60632 * 307.77254 * 19 18 16 41 41 H 1.09004 * 109.29853 * 69.56132 * 20 19 18 42 42 H 1.09005 * 109.29677 * 188.93232 * 20 19 18 43 43 H 1.08003 * 120.02870 * 0.02976 * 23 22 21 44 44 H 1.08008 * 119.96347 * 180.23569 * 24 23 22 45 45 H 1.08002 * 119.93394 * 179.76703 * 25 24 23 46 46 H 1.08004 * 119.96270 * 179.97438 * 26 25 24 47 47 H 1.08001 * 120.03818 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3212 -1.1203 -4.0081 9 1 1.3425 -2.1616 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6291 -1.7583 -3.7123 12 7 2.0182 -0.6906 1.1961 13 6 1.5468 -2.0430 1.5048 14 6 2.9012 -0.0819 2.0125 15 8 3.3449 -0.6728 2.9742 16 6 3.3371 1.3328 1.7301 17 1 3.6457 1.4155 0.6881 18 6 4.5147 1.6930 2.6393 19 6 4.7619 3.2028 2.5368 20 6 3.5742 3.9369 3.1605 21 7 2.3202 3.4397 2.6087 22 6 1.1814 4.2416 2.7419 23 6 0.7680 4.6596 4.0001 24 6 -0.3541 5.4548 4.1278 25 6 -1.0714 5.8263 3.0056 26 6 -0.6651 5.4078 1.7518 27 6 0.4588 4.6165 1.6168 28 6 2.1902 2.2683 1.9848 29 8 1.0868 1.9411 1.6021 30 1 -0.3634 -1.0251 0.0716 31 1 -0.3634 0.5747 0.8520 32 1 -0.3633 0.4506 -0.9236 33 1 0.7081 1.1609 -3.4844 34 1 0.6060 -1.9837 2.0521 35 1 1.3937 -2.5949 0.5775 36 1 2.2902 -2.5564 2.1148 37 1 5.4051 1.1526 2.3179 38 1 4.2768 1.4291 3.6698 39 1 5.6746 3.4613 3.0740 40 1 4.8584 3.4873 1.4891 41 1 3.5803 3.7806 4.2393 42 1 3.6611 5.0036 2.9537 43 1 1.3255 4.3664 4.8773 44 1 -0.6739 5.7833 5.1057 45 1 -1.9506 6.4450 3.1084 46 1 -1.2278 5.6993 0.8772 47 1 0.7754 4.2896 0.6374 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293079643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:11 Heat of formation + Delta-G solvation = -43.184300 kcal Electronic energy + Delta-G solvation = -30081.092712 eV Core-core repulsion = 26228.648329 eV Total energy + Delta-G solvation = -3852.444383 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.47598 -40.68232 -39.22269 -37.90620 -37.02360 -35.11011 -34.57046 -31.86223 -31.38347 -30.96775 -30.25269 -28.22162 -27.24187 -25.67099 -24.56817 -23.44768 -23.11439 -22.55527 -20.55810 -19.63626 -18.66139 -18.43358 -18.28240 -17.63234 -17.16082 -16.95841 -16.62967 -16.17723 -16.07429 -15.50051 -15.19434 -15.06709 -14.83054 -14.59248 -14.51920 -14.29231 -14.22981 -13.72928 -13.57181 -13.46157 -13.14202 -12.99156 -12.83784 -12.71137 -12.54070 -12.42956 -12.38183 -12.25412 -12.15775 -12.08833 -12.03297 -11.82946 -11.22670 -10.86947 -10.67609 -10.46013 -10.37186 -9.84942 -9.36872 -9.21426 -8.11299 -6.29401 0.31730 0.48023 1.31923 1.40693 1.42183 1.51623 1.59893 2.01601 2.33309 2.48355 2.84755 3.14013 3.48468 3.54113 3.71828 3.78507 4.02365 4.07441 4.10452 4.24927 4.27937 4.40784 4.49151 4.54002 4.55475 4.61695 4.65420 4.75443 4.81347 4.82247 4.89369 4.99539 5.02343 5.10977 5.13615 5.20719 5.29716 5.40356 5.44879 5.48638 5.56338 5.60523 5.66969 5.78023 6.02992 6.12954 6.23826 6.29307 6.62160 6.83470 7.13757 7.22038 7.43206 8.90215 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011747 B = 0.004736 C = 0.004043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.051019 B = 5910.198646 C = 6924.603748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.277 3.723 3 H 0.046 0.954 4 C -0.551 4.551 5 H 0.052 0.948 6 C 0.025 3.975 7 N -0.908 5.908 8 Si 0.956 3.044 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.270 1.270 12 N -0.585 5.585 13 C 0.092 3.908 14 C 0.518 3.482 15 O -0.589 6.589 16 C -0.117 4.117 17 H 0.119 0.881 18 C -0.098 4.098 19 C -0.125 4.125 20 C 0.105 3.895 21 N -0.556 5.556 22 C 0.123 3.877 23 C -0.132 4.132 24 C -0.107 4.107 25 C -0.124 4.124 26 C -0.118 4.118 27 C -0.125 4.125 28 C 0.516 3.484 29 O -0.536 6.536 30 H 0.020 0.980 31 H 0.025 0.975 32 H 0.064 0.936 33 H 0.264 0.736 34 H 0.048 0.952 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.130 0.870 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.140 0.860 44 H 0.158 0.842 45 H 0.152 0.848 46 H 0.133 0.867 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.582 12.524 12.422 18.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.176 3.824 3 H 0.064 0.936 4 C -0.589 4.589 5 H 0.070 0.930 6 C -0.175 4.175 7 N -0.546 5.546 8 Si 0.782 3.218 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.195 1.195 12 N -0.313 5.313 13 C -0.050 4.050 14 C 0.305 3.695 15 O -0.472 6.472 16 C -0.141 4.141 17 H 0.137 0.863 18 C -0.136 4.136 19 C -0.163 4.163 20 C -0.015 4.015 21 N -0.285 5.285 22 C 0.032 3.968 23 C -0.151 4.151 24 C -0.125 4.125 25 C -0.142 4.142 26 C -0.136 4.136 27 C -0.145 4.145 28 C 0.304 3.696 29 O -0.412 6.412 30 H 0.039 0.961 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.106 0.894 38 H 0.094 0.906 39 H 0.148 0.852 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.117 0.883 43 H 0.158 0.842 44 H 0.176 0.824 45 H 0.170 0.830 46 H 0.151 0.849 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.178 12.099 12.530 17.706 hybrid contribution -0.047 -0.855 -1.535 1.758 sum 3.131 11.244 10.995 16.035 Atomic orbital electron populations 1.21750 0.98140 0.97697 1.00459 1.18752 0.91577 0.92473 0.79612 0.93646 1.21736 1.32169 1.13272 0.91756 0.92998 1.25587 0.94939 0.95546 1.01440 1.70038 1.36748 1.23618 1.24231 0.85587 0.78785 0.78386 0.79049 1.20198 1.20602 1.19511 1.48224 1.41537 1.16309 1.25233 1.21469 0.98902 0.83553 1.01117 1.20214 0.78889 0.88237 0.82132 1.90555 1.58494 1.67373 1.30761 1.21355 0.96624 0.91283 1.04815 0.86302 1.21550 0.95321 0.97693 0.99063 1.21946 0.98896 0.92434 1.02995 1.21867 0.80667 0.99864 0.99132 1.45031 1.10030 1.16834 1.56602 1.17883 0.89837 0.94954 0.94101 1.21319 0.98409 1.00184 0.95233 1.21377 0.93997 0.96996 1.00149 1.21509 1.00626 1.00330 0.91742 1.21259 0.95678 0.97422 0.99274 1.21163 0.97571 0.98282 0.97466 1.19875 0.90048 0.81997 0.77704 1.90860 1.27269 1.73951 1.49106 0.96064 0.95564 0.91739 0.92700 0.93384 0.91044 0.91128 0.89436 0.90610 0.85180 0.90881 0.89370 0.88279 0.84182 0.82424 0.82989 0.84923 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.46 8.57 71.98 0.62 -5.84 16 2 C 0.28 14.41 1.43 44.25 0.06 14.47 16 3 H 0.05 2.53 4.25 -2.39 -0.01 2.52 16 4 C -0.55 -30.11 8.13 25.60 0.21 -29.91 16 5 H 0.05 2.84 7.72 -2.91 -0.02 2.82 16 6 C 0.03 1.37 5.30 84.66 0.45 1.82 16 7 N -0.91 -51.40 11.29 21.45 0.24 -51.16 16 8 Si 0.96 42.90 29.54 68.60 2.03 44.93 16 9 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 11 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 12 N -0.59 -27.74 2.63 -826.77 -2.18 -29.92 16 13 C 0.09 3.91 9.26 127.77 1.18 5.10 16 14 C 0.52 23.12 6.75 87.66 0.59 23.71 16 15 O -0.59 -27.15 15.24 -3.04 -0.05 -27.19 16 16 C -0.12 -4.38 1.97 -12.43 -0.02 -4.40 16 17 H 0.12 4.74 7.23 -2.39 -0.02 4.73 16 18 C -0.10 -2.64 4.89 30.73 0.15 -2.49 16 19 C -0.13 -2.28 6.02 30.68 0.18 -2.10 16 20 C 0.10 2.03 5.99 86.49 0.52 2.55 16 21 N -0.56 -16.73 2.94 -635.82 -1.87 -18.60 16 22 C 0.12 3.70 4.95 38.15 0.19 3.89 16 23 C -0.13 -3.10 9.54 22.39 0.21 -2.89 16 24 C -0.11 -2.08 10.04 22.25 0.22 -1.86 16 25 C -0.12 -2.57 10.04 22.29 0.22 -2.34 16 26 C -0.12 -3.14 10.04 22.25 0.22 -2.92 16 27 C -0.12 -4.12 8.66 22.39 0.19 -3.92 16 28 C 0.52 19.98 6.48 87.71 0.57 20.55 16 29 O -0.54 -25.21 9.81 -3.04 -0.03 -25.24 16 30 H 0.02 1.04 7.38 -2.39 -0.02 1.02 16 31 H 0.03 1.37 6.29 -2.38 -0.02 1.36 16 32 H 0.06 3.70 5.97 -2.39 -0.01 3.68 16 33 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 34 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.07 3.00 7.49 -2.39 -0.02 2.98 16 36 H 0.07 2.83 7.25 -2.38 -0.02 2.81 16 37 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.08 2.14 7.57 -2.39 -0.02 2.12 16 39 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.07 1.41 8.12 -2.39 -0.02 1.39 16 41 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.10 1.52 8.08 -2.38 -0.02 1.50 16 43 H 0.14 2.68 8.05 -2.91 -0.02 2.66 16 44 H 0.16 1.94 8.06 -2.91 -0.02 1.92 16 45 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 46 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 47 H 0.09 3.62 7.82 -2.91 -0.02 3.60 16 Total: -1.00 -72.28 369.09 4.89 -67.39 By element: Atomic # 1 Polarization: 25.40 SS G_CDS: 0.97 Total: 26.37 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: 5.77 Total: 13.42 kcal Atomic # 7 Polarization: -95.87 SS G_CDS: -3.80 Total: -99.68 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: -0.08 Total: -52.43 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.93 kcal Total: -72.28 4.89 -67.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293079643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.203 kcal (2) G-P(sol) polarization free energy of solvation -72.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds