Wall clock time and date at job start Tue Mar 31 2020 17:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50694 * 119.99948 * 2 1 4 4 N 1.46512 * 109.47144 * 125.00490 * 3 2 1 5 5 C 1.46503 * 119.99340 * 286.41665 * 4 3 2 6 6 C 1.50696 * 109.47294 * 269.99504 * 5 4 3 7 7 H 1.08005 * 119.99727 * 0.02562 * 6 5 4 8 8 C 1.37868 * 120.00061 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00288 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99908 * 180.02562 * 8 6 5 11 11 H 1.48490 * 109.47523 * 90.00096 * 10 8 6 12 12 H 1.48508 * 109.46825 * 210.00026 * 10 8 6 13 13 H 1.48494 * 109.47228 * 329.99451 * 10 8 6 14 14 C 1.34772 * 119.99938 * 106.41395 * 4 3 2 15 15 O 1.21555 * 119.99720 * 177.10670 * 14 4 3 16 16 C 1.47852 * 120.00270 * 356.83736 * 14 4 3 17 17 C 1.39710 * 120.07521 * 332.24216 * 16 14 4 18 18 C 1.38046 * 120.14845 * 179.97438 * 17 16 14 19 19 C 1.38106 * 120.29686 * 0.02755 * 18 17 16 20 20 C 1.39662 * 120.14505 * 359.97438 * 19 18 17 21 21 C 1.47853 * 120.07601 * 180.02562 * 20 19 18 22 22 O 1.21549 * 120.00526 * 136.44654 * 21 20 19 23 23 N 1.34783 * 120.00015 * 316.45014 * 21 20 19 24 24 C 1.46500 * 119.99825 * 3.96996 * 23 21 20 25 25 C 1.46498 * 120.00012 * 183.97536 * 23 21 20 26 26 C 1.53000 * 109.46988 * 89.99826 * 25 23 21 27 27 C 1.39295 * 120.07696 * 151.97709 * 16 14 4 28 28 H 1.08002 * 120.00203 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00335 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.00335 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47151 * 5.00517 * 3 2 1 32 32 H 1.09001 * 109.47729 * 245.00025 * 3 2 1 33 33 H 1.08995 * 109.47156 * 30.00485 * 5 4 3 34 34 H 1.09007 * 109.46447 * 149.99855 * 5 4 3 35 35 H 0.97001 * 120.00325 * 180.02562 * 9 8 6 36 36 H 1.08001 * 119.92410 * 359.96268 * 17 16 14 37 37 H 1.08002 * 119.85354 * 180.02562 * 18 17 16 38 38 H 1.08003 * 119.92492 * 179.97438 * 19 18 17 39 39 H 1.09007 * 109.47194 * 85.64699 * 24 23 21 40 40 H 1.09001 * 109.47223 * 205.64880 * 24 23 21 41 41 H 1.09002 * 109.47455 * 325.65497 * 24 23 21 42 42 H 1.09003 * 109.46641 * 209.99707 * 25 23 21 43 43 H 1.08992 * 109.47441 * 329.99878 * 25 23 21 44 44 H 1.09004 * 109.46770 * 179.97438 * 26 25 23 45 45 H 1.08995 * 109.47175 * 299.99753 * 26 25 23 46 46 H 1.09006 * 109.46896 * 59.99992 * 26 25 23 47 47 H 1.07997 * 120.14490 * 0.02562 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.4859 1.5166 2.4931 6 6 2.4437 2.9874 2.8183 7 1 2.7630 3.7122 2.0839 8 6 1.9977 3.4079 4.0532 9 7 1.6094 2.5253 4.9477 10 14 1.9448 5.2312 4.4561 11 1 0.6238 5.7862 4.0663 12 1 2.1512 5.4221 5.9143 13 1 3.0175 5.9347 3.7081 14 6 4.3168 1.1864 0.9195 15 8 5.0934 1.2612 1.8517 16 6 4.8231 0.9301 -0.4458 17 6 4.0145 0.2805 -1.3818 18 6 4.4855 0.0409 -2.6571 19 6 5.7578 0.4404 -3.0165 20 6 6.5765 1.0907 -2.0906 21 6 7.9381 1.5182 -2.4772 22 8 8.3451 2.6168 -2.1534 23 7 8.7280 0.6897 -3.1886 24 6 8.2079 -0.5986 -3.6535 25 6 10.1067 1.0774 -3.4970 26 6 11.0348 0.5904 -2.3824 27 6 6.1052 1.3406 -0.8034 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1315 0.0897 32 1 2.6212 1.4027 -0.9314 33 1 1.4816 1.0993 2.5660 34 1 3.1430 1.0073 3.1982 35 1 1.2952 2.8212 5.8164 36 1 3.0189 -0.0350 -1.1070 37 1 3.8563 -0.4613 -3.3771 38 1 6.1203 0.2495 -4.0158 39 1 7.6917 -0.4605 -4.6036 40 1 9.0340 -1.2971 -3.7870 41 1 7.5110 -0.9966 -2.9160 42 1 10.4077 0.6273 -4.4430 43 1 10.1703 2.1627 -3.5744 44 1 12.0607 0.8785 -2.6120 45 1 10.7338 1.0404 -1.4364 46 1 10.9712 -0.4951 -2.3050 47 1 6.7329 1.8466 -0.0848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293706466.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:24 Heat of formation + Delta-G solvation = 12.016057 kcal Electronic energy + Delta-G solvation = -28139.860380 eV Core-core repulsion = 24289.809664 eV Total energy + Delta-G solvation = -3850.050716 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.72079 -39.65323 -37.68128 -36.10327 -35.97251 -33.27148 -32.49418 -32.02308 -31.10353 -30.55571 -27.59139 -27.14055 -25.85787 -24.64077 -23.92564 -22.52284 -22.05946 -20.29288 -19.92953 -18.73766 -17.40213 -16.90833 -16.70953 -16.43846 -16.07237 -15.76744 -15.42061 -14.82766 -14.62512 -14.43821 -14.22986 -13.94398 -13.85100 -13.55031 -13.40149 -13.12093 -12.99780 -12.75223 -12.70428 -12.41249 -12.21508 -12.05233 -11.91156 -11.44233 -11.31317 -11.29686 -11.13900 -11.04391 -10.83716 -10.58109 -10.17047 -10.03386 -9.68664 -9.32375 -9.12330 -9.05815 -8.94158 -8.77450 -8.41831 -7.74230 -6.03039 -4.07418 0.74248 1.12234 2.37109 2.51448 2.70947 3.27939 3.32346 3.39174 3.44913 3.78819 4.04470 4.25218 4.46673 4.62489 4.76061 4.77668 4.78500 4.87577 5.01088 5.10167 5.13273 5.16459 5.20315 5.31240 5.32229 5.33954 5.36469 5.41345 5.52041 5.61442 5.69007 5.84295 5.92620 5.98268 6.13411 6.16150 6.19736 6.25821 6.32140 6.68982 6.73541 6.86935 7.05330 7.08266 7.41877 7.50569 7.93140 7.95440 8.23521 8.32644 8.87267 9.02407 9.57481 11.05187 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013782 B = 0.003136 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.199891 B = 8925.052561 C =10352.462466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.179 4.179 3 C 0.111 3.889 4 N -0.583 5.583 5 C 0.248 3.752 6 C -0.526 4.526 7 H 0.058 0.942 8 C 0.062 3.938 9 N -0.895 5.895 10 Si 0.897 3.103 11 H -0.280 1.280 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.544 3.456 15 O -0.529 6.529 16 C -0.121 4.121 17 C -0.091 4.091 18 C -0.135 4.135 19 C -0.080 4.080 20 C -0.142 4.142 21 C 0.564 3.436 22 O -0.527 6.527 23 N -0.616 5.616 24 C 0.074 3.926 25 C 0.111 3.889 26 C -0.169 4.169 27 C -0.013 4.013 28 H 0.096 0.904 29 H 0.101 0.899 30 H 0.109 0.891 31 H 0.082 0.918 32 H 0.097 0.903 33 H 0.036 0.964 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.158 0.842 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.066 0.934 45 H 0.061 0.939 46 H 0.056 0.944 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.996 -10.420 -22.245 25.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.198 4.198 3 C -0.012 4.012 4 N -0.313 5.313 5 C 0.130 3.870 6 C -0.565 4.565 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.534 5.534 10 Si 0.725 3.275 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.198 1.198 14 C 0.330 3.670 15 O -0.407 6.407 16 C -0.125 4.125 17 C -0.109 4.109 18 C -0.153 4.153 19 C -0.099 4.099 20 C -0.145 4.145 21 C 0.352 3.648 22 O -0.403 6.403 23 N -0.350 5.350 24 C -0.069 4.069 25 C -0.011 4.011 26 C -0.228 4.228 27 C -0.033 4.033 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.127 0.873 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.175 0.825 37 H 0.151 0.849 38 H 0.149 0.851 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.080 0.920 46 H 0.075 0.925 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.563 -9.785 -21.345 24.994 hybrid contribution -0.181 0.850 0.291 0.917 sum 8.382 -8.935 -21.054 24.359 Atomic orbital electron populations 1.23861 0.95753 1.01983 0.98986 1.23281 0.96436 0.98783 1.01260 1.21278 0.93544 0.95506 0.90910 1.48130 1.04478 1.68985 1.09703 1.19310 0.94879 0.97121 0.75735 1.21424 1.43318 0.92025 0.99738 0.92381 1.24916 0.95188 0.97987 0.95921 1.69933 1.43724 1.33515 1.06219 0.86503 0.78296 0.85078 0.77628 1.20653 1.21070 1.19797 1.18132 0.83023 0.78434 0.87377 1.90777 1.55445 1.50769 1.43687 1.20250 0.94933 1.01798 0.95501 1.22491 1.00349 0.95202 0.92902 1.21053 0.95720 1.01788 0.96776 1.21560 0.94081 0.95316 0.98910 1.19696 0.94789 1.04346 0.95702 1.18405 0.84794 0.84202 0.77372 1.90805 1.74837 1.20691 1.53976 1.47788 1.12987 1.19244 1.54980 1.22064 1.00398 0.84602 0.99866 1.21449 0.79934 1.01911 0.97833 1.22150 0.99351 1.01455 0.99822 1.21254 0.94018 0.93576 0.94463 0.88524 0.88114 0.87274 0.89946 0.88515 0.94580 0.93816 0.92729 0.82450 0.84906 0.85063 0.92292 0.90926 0.90255 0.90493 0.89625 0.91482 0.91991 0.92537 0.84212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 14.32 29.02 0.42 -1.67 16 2 C -0.18 -2.44 7.97 -36.03 -0.29 -2.73 16 3 C 0.11 1.80 5.36 -5.19 -0.03 1.77 16 4 N -0.58 -12.49 2.49 -177.54 -0.44 -12.93 16 5 C 0.25 6.53 5.07 -5.19 -0.03 6.50 16 6 C -0.53 -15.13 9.38 -34.45 -0.32 -15.46 16 7 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 8 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 9 N -0.89 -26.79 13.29 55.43 0.74 -26.05 16 10 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 13 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 14 C 0.54 11.86 7.46 -12.33 -0.09 11.77 16 15 O -0.53 -13.89 16.28 5.32 0.09 -13.80 16 16 C -0.12 -2.04 5.50 -105.02 -0.58 -2.62 16 17 C -0.09 -1.16 7.41 -39.10 -0.29 -1.45 16 18 C -0.14 -1.30 10.02 -39.70 -0.40 -1.70 16 19 C -0.08 -0.79 7.65 -39.10 -0.30 -1.09 16 20 C -0.14 -1.90 5.07 -105.02 -0.53 -2.43 16 21 C 0.56 7.79 7.30 -12.32 -0.09 7.70 16 22 O -0.53 -9.32 16.52 5.32 0.09 -9.23 16 23 N -0.62 -6.09 2.87 -182.69 -0.52 -6.62 16 24 C 0.07 0.46 8.96 59.85 0.54 1.00 16 25 C 0.11 0.93 6.14 -4.04 -0.02 0.91 16 26 C -0.17 -1.39 10.24 37.16 0.38 -1.01 16 27 C -0.01 -0.22 9.21 -38.78 -0.36 -0.58 16 28 H 0.10 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.10 1.25 7.84 -52.49 -0.41 0.84 16 30 H 0.11 1.37 7.42 -52.49 -0.39 0.98 16 31 H 0.08 1.39 7.79 -51.93 -0.40 0.99 16 32 H 0.10 1.34 4.18 -51.93 -0.22 1.13 16 33 H 0.04 0.95 7.84 -51.93 -0.41 0.55 16 34 H 0.04 1.30 7.46 -51.93 -0.39 0.91 16 35 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 36 H 0.16 1.84 3.06 -52.49 -0.16 1.68 16 37 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.13 0.90 5.76 -52.48 -0.30 0.60 16 39 H 0.06 0.27 6.92 -51.92 -0.36 -0.09 16 40 H 0.07 0.32 8.04 -51.93 -0.42 -0.09 16 41 H 0.08 0.55 6.05 -51.93 -0.31 0.23 16 42 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 43 H 0.09 0.85 7.37 -51.93 -0.38 0.47 16 44 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.14 2.59 7.89 -52.49 -0.41 2.18 16 LS Contribution 387.18 15.07 5.83 5.83 Total: -1.00 -36.32 387.18 -7.98 -44.30 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -6.65 Total: 0.66 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -2.09 Total: 0.59 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: -0.23 Total: -45.60 kcal Atomic # 8 Polarization: -23.21 SS G_CDS: 0.17 Total: -23.03 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.32 -7.98 -44.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293706466.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.319 kcal (2) G-P(sol) polarization free energy of solvation -36.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds