Wall clock time and date at job start Tue Mar 31 2020 17:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50694 * 119.99948 * 2 1 4 4 N 1.46512 * 109.47144 * 125.00490 * 3 2 1 5 5 C 1.46503 * 119.99340 * 286.41665 * 4 3 2 6 6 C 1.50696 * 109.47294 * 269.99504 * 5 4 3 7 7 H 1.08005 * 119.99727 * 0.02562 * 6 5 4 8 8 C 1.37868 * 120.00061 * 180.02562 * 6 5 4 9 9 N 1.31517 * 120.00288 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99908 * 180.02562 * 8 6 5 11 11 H 1.48490 * 109.47523 * 90.00096 * 10 8 6 12 12 H 1.48508 * 109.46825 * 210.00026 * 10 8 6 13 13 H 1.48494 * 109.47228 * 329.99451 * 10 8 6 14 14 C 1.34772 * 119.99938 * 106.41395 * 4 3 2 15 15 O 1.21555 * 119.99720 * 177.10670 * 14 4 3 16 16 C 1.47852 * 120.00270 * 356.83736 * 14 4 3 17 17 C 1.39710 * 120.07521 * 332.24216 * 16 14 4 18 18 C 1.38046 * 120.14845 * 179.97438 * 17 16 14 19 19 C 1.38106 * 120.29686 * 0.02755 * 18 17 16 20 20 C 1.39662 * 120.14505 * 359.97438 * 19 18 17 21 21 C 1.47853 * 120.07601 * 180.02562 * 20 19 18 22 22 O 1.21549 * 120.00526 * 136.44654 * 21 20 19 23 23 N 1.34783 * 120.00015 * 316.45014 * 21 20 19 24 24 C 1.46500 * 119.99825 * 3.96996 * 23 21 20 25 25 C 1.46498 * 120.00012 * 183.97536 * 23 21 20 26 26 C 1.53000 * 109.46988 * 89.99826 * 25 23 21 27 27 C 1.39295 * 120.07696 * 151.97709 * 16 14 4 28 28 H 1.08002 * 120.00203 * 179.97438 * 1 2 3 29 29 H 1.07999 * 120.00335 * 359.97438 * 1 2 3 30 30 H 1.07999 * 120.00335 * 180.02562 * 2 1 3 31 31 H 1.08994 * 109.47151 * 5.00517 * 3 2 1 32 32 H 1.09001 * 109.47729 * 245.00025 * 3 2 1 33 33 H 1.08995 * 109.47156 * 30.00485 * 5 4 3 34 34 H 1.09007 * 109.46447 * 149.99855 * 5 4 3 35 35 H 0.97001 * 120.00325 * 180.02562 * 9 8 6 36 36 H 1.08001 * 119.92410 * 359.96268 * 17 16 14 37 37 H 1.08002 * 119.85354 * 180.02562 * 18 17 16 38 38 H 1.08003 * 119.92492 * 179.97438 * 19 18 17 39 39 H 1.09007 * 109.47194 * 85.64699 * 24 23 21 40 40 H 1.09001 * 109.47223 * 205.64880 * 24 23 21 41 41 H 1.09002 * 109.47455 * 325.65497 * 24 23 21 42 42 H 1.09003 * 109.46641 * 209.99707 * 25 23 21 43 43 H 1.08992 * 109.47441 * 329.99878 * 25 23 21 44 44 H 1.09004 * 109.46770 * 179.97438 * 26 25 23 45 45 H 1.08995 * 109.47175 * 299.99753 * 26 25 23 46 46 H 1.09006 * 109.46896 * 59.99992 * 26 25 23 47 47 H 1.07997 * 120.14490 * 0.02562 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.4859 1.5166 2.4931 6 6 2.4437 2.9874 2.8183 7 1 2.7630 3.7122 2.0839 8 6 1.9977 3.4079 4.0532 9 7 1.6094 2.5253 4.9477 10 14 1.9448 5.2312 4.4561 11 1 0.6238 5.7862 4.0663 12 1 2.1512 5.4221 5.9143 13 1 3.0175 5.9347 3.7081 14 6 4.3168 1.1864 0.9195 15 8 5.0934 1.2612 1.8517 16 6 4.8231 0.9301 -0.4458 17 6 4.0145 0.2805 -1.3818 18 6 4.4855 0.0409 -2.6571 19 6 5.7578 0.4404 -3.0165 20 6 6.5765 1.0907 -2.0906 21 6 7.9381 1.5182 -2.4772 22 8 8.3451 2.6168 -2.1534 23 7 8.7280 0.6897 -3.1886 24 6 8.2079 -0.5986 -3.6535 25 6 10.1067 1.0774 -3.4970 26 6 11.0348 0.5904 -2.3824 27 6 6.1052 1.3406 -0.8034 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5401 0.9353 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1315 0.0897 32 1 2.6212 1.4027 -0.9314 33 1 1.4816 1.0993 2.5660 34 1 3.1430 1.0073 3.1982 35 1 1.2952 2.8212 5.8164 36 1 3.0189 -0.0350 -1.1070 37 1 3.8563 -0.4613 -3.3771 38 1 6.1203 0.2495 -4.0158 39 1 7.6917 -0.4605 -4.6036 40 1 9.0340 -1.2971 -3.7870 41 1 7.5110 -0.9966 -2.9160 42 1 10.4077 0.6273 -4.4430 43 1 10.1703 2.1627 -3.5744 44 1 12.0607 0.8785 -2.6120 45 1 10.7338 1.0404 -1.4364 46 1 10.9712 -0.4951 -2.3050 47 1 6.7329 1.8466 -0.0848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293706466.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:11:23 Heat of formation + Delta-G solvation = -12.065696 kcal Electronic energy + Delta-G solvation = -28140.904644 eV Core-core repulsion = 24289.809664 eV Total energy + Delta-G solvation = -3851.094979 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.85870 -40.96359 -38.94550 -37.55261 -36.99813 -35.21949 -33.76034 -33.35234 -32.18973 -31.50580 -29.47600 -27.82595 -27.23057 -25.83921 -25.39946 -23.70648 -23.29350 -21.51859 -20.97294 -19.99424 -18.73358 -18.53905 -17.98385 -17.77164 -17.21657 -17.05062 -16.71276 -16.22556 -16.13788 -15.71717 -15.39971 -15.12631 -14.81420 -14.62133 -14.52428 -14.43331 -14.28772 -14.03243 -13.68468 -13.43578 -13.34663 -13.09486 -13.05855 -12.99066 -12.90998 -12.61740 -12.48171 -12.34534 -12.27851 -12.10658 -11.98722 -11.72531 -11.13275 -10.76186 -10.67278 -10.43678 -10.10308 -9.93656 -9.73317 -9.54852 -8.26673 -6.40922 -0.30525 0.01797 1.28597 1.32317 1.35756 1.46187 1.48485 1.74217 2.02680 2.27092 2.40110 2.73431 3.02983 3.37975 3.48966 3.82084 3.95695 4.00652 4.05370 4.13080 4.21001 4.24122 4.27238 4.34696 4.35539 4.50724 4.57053 4.69656 4.80182 4.82861 4.84316 4.92263 4.96961 4.97357 5.06336 5.13806 5.18473 5.23966 5.24703 5.26367 5.44811 5.52808 5.68839 5.70706 5.76493 5.92947 6.01841 6.22413 6.59521 6.68012 6.99116 7.19183 7.34378 8.80708 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013782 B = 0.003136 C = 0.002704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2031.199891 B = 8925.052561 C =10352.462466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.195 4.195 3 C 0.107 3.893 4 N -0.586 5.586 5 C 0.266 3.734 6 C -0.547 4.547 7 H 0.047 0.953 8 C 0.012 3.988 9 N -0.924 5.924 10 Si 0.965 3.035 11 H -0.259 1.259 12 H -0.278 1.278 13 H -0.279 1.279 14 C 0.533 3.467 15 O -0.596 6.596 16 C -0.144 4.144 17 C -0.085 4.085 18 C -0.109 4.109 19 C -0.052 4.052 20 C -0.146 4.146 21 C 0.554 3.446 22 O -0.584 6.584 23 N -0.606 5.606 24 C 0.061 3.939 25 C 0.106 3.894 26 C -0.166 4.166 27 C -0.040 4.040 28 H 0.124 0.876 29 H 0.098 0.902 30 H 0.125 0.875 31 H 0.071 0.929 32 H 0.124 0.876 33 H 0.033 0.967 34 H -0.004 1.004 35 H 0.268 0.732 36 H 0.171 0.829 37 H 0.190 0.810 38 H 0.178 0.822 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.074 0.926 42 H 0.120 0.880 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.023 0.977 46 H 0.070 0.930 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.846 -12.342 -26.959 30.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.213 4.213 3 C -0.014 4.014 4 N -0.315 5.315 5 C 0.146 3.854 6 C -0.586 4.586 7 H 0.065 0.935 8 C -0.188 4.188 9 N -0.564 5.564 10 Si 0.789 3.211 11 H -0.183 1.183 12 H -0.203 1.203 13 H -0.204 1.204 14 C 0.323 3.677 15 O -0.478 6.478 16 C -0.147 4.147 17 C -0.103 4.103 18 C -0.126 4.126 19 C -0.070 4.070 20 C -0.149 4.149 21 C 0.343 3.657 22 O -0.465 6.465 23 N -0.338 5.338 24 C -0.080 4.080 25 C -0.015 4.015 26 C -0.224 4.224 27 C -0.060 4.060 28 H 0.142 0.858 29 H 0.116 0.884 30 H 0.142 0.858 31 H 0.089 0.911 32 H 0.141 0.859 33 H 0.051 0.949 34 H 0.014 0.986 35 H 0.077 0.923 36 H 0.188 0.812 37 H 0.207 0.793 38 H 0.195 0.805 39 H 0.110 0.890 40 H 0.116 0.884 41 H 0.093 0.907 42 H 0.138 0.862 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.042 0.958 46 H 0.089 0.911 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.383 -11.764 -26.133 29.594 hybrid contribution 0.220 1.348 1.661 2.150 sum 7.604 -10.416 -24.472 27.662 Atomic orbital electron populations 1.24110 0.95338 1.03182 0.96290 1.23153 0.96826 0.97755 1.03591 1.21593 0.92890 0.97011 0.89923 1.48098 1.05483 1.68555 1.09367 1.18726 0.93398 0.95398 0.77918 1.21671 1.43706 0.93033 1.00147 0.93476 1.25798 0.94526 1.02826 0.95611 1.70035 1.44069 1.35644 1.06646 0.85460 0.78923 0.79237 0.77471 1.18334 1.20279 1.20439 1.19026 0.82545 0.76971 0.89140 1.90715 1.57007 1.53770 1.46327 1.19786 0.95897 1.05449 0.93592 1.22633 1.00218 0.94084 0.93361 1.21626 0.95676 0.99555 0.95759 1.22082 0.93304 0.92024 0.99622 1.19729 0.95364 1.04894 0.94877 1.18627 0.85390 0.84060 0.77629 1.90772 1.75931 1.23325 1.56446 1.47934 1.13008 1.19733 1.53083 1.22433 1.01762 0.82916 1.00890 1.21640 0.79183 1.01103 0.99622 1.22125 1.00355 1.01982 0.97962 1.20977 0.93915 0.95391 0.95700 0.85836 0.88383 0.85774 0.91057 0.85853 0.94910 0.98575 0.92260 0.81207 0.79305 0.80454 0.89011 0.88394 0.90725 0.86230 0.91882 0.89663 0.95808 0.91131 0.88676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 14.32 67.79 0.97 -2.43 16 2 C -0.19 -4.99 7.97 25.65 0.20 -4.79 16 3 C 0.11 3.47 5.36 85.63 0.46 3.92 16 4 N -0.59 -26.67 2.49 -833.90 -2.08 -28.74 16 5 C 0.27 14.99 5.07 85.63 0.43 15.43 16 6 C -0.55 -33.19 9.38 25.60 0.24 -32.95 16 7 H 0.05 2.88 7.81 -2.91 -0.02 2.86 16 8 C 0.01 0.70 5.46 84.65 0.46 1.16 16 9 N -0.92 -57.18 13.29 21.44 0.28 -56.90 16 10 Si 0.96 46.89 29.54 68.60 2.03 48.92 16 11 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 12 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 13 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 14 C 0.53 25.27 7.46 86.79 0.65 25.91 16 15 O -0.60 -34.85 16.28 -3.89 -0.06 -34.92 16 16 C -0.14 -5.06 5.50 -20.12 -0.11 -5.17 16 17 C -0.09 -1.95 7.41 22.58 0.17 -1.78 16 18 C -0.11 -1.49 10.02 22.19 0.22 -1.27 16 19 C -0.05 -0.79 7.65 22.58 0.17 -0.62 16 20 C -0.15 -3.82 5.07 -20.12 -0.10 -3.92 16 21 C 0.55 15.48 7.30 86.79 0.63 16.12 16 22 O -0.58 -22.24 16.52 -3.87 -0.06 -22.30 16 23 N -0.61 -10.78 2.87 -850.18 -2.44 -13.22 16 24 C 0.06 0.47 8.96 127.77 1.14 1.62 16 25 C 0.11 1.61 6.14 86.38 0.53 2.14 16 26 C -0.17 -2.62 10.24 71.98 0.74 -1.88 16 27 C -0.04 -1.42 9.21 22.79 0.21 -1.21 16 28 H 0.12 2.14 8.06 -2.91 -0.02 2.12 16 29 H 0.10 2.26 7.84 -2.91 -0.02 2.24 16 30 H 0.12 2.83 7.42 -2.91 -0.02 2.81 16 31 H 0.07 2.44 7.79 -2.39 -0.02 2.42 16 32 H 0.12 3.28 4.18 -2.39 -0.01 3.27 16 33 H 0.03 1.83 7.84 -2.39 -0.02 1.82 16 34 H 0.00 -0.25 7.46 -2.38 -0.02 -0.27 16 35 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 36 H 0.17 3.49 3.06 -2.91 -0.01 3.48 16 37 H 0.19 0.71 8.06 -2.91 -0.02 0.69 16 38 H 0.18 1.13 5.76 -2.91 -0.02 1.11 16 39 H 0.09 0.19 6.92 -2.38 -0.02 0.17 16 40 H 0.10 0.35 8.04 -2.39 -0.02 0.33 16 41 H 0.07 0.70 6.05 -2.39 -0.01 0.69 16 42 H 0.12 0.83 8.07 -2.39 -0.02 0.81 16 43 H 0.06 1.27 7.37 -2.39 -0.02 1.25 16 44 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.02 0.54 8.14 -2.39 -0.02 0.52 16 46 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 47 H 0.09 4.13 7.89 -2.91 -0.02 4.11 16 Total: -1.00 -91.83 387.18 5.66 -86.17 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: 0.98 Total: 10.69 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 7.02 Total: 10.30 kcal Atomic # 7 Polarization: -94.62 SS G_CDS: -4.24 Total: -98.86 kcal Atomic # 8 Polarization: -57.09 SS G_CDS: -0.13 Total: -57.22 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.92 kcal Total: -91.83 5.66 -86.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293706466.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.105 kcal (2) G-P(sol) polarization free energy of solvation -91.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds