Wall clock time and date at job start Tue Mar 31 2020 16:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47345 * 2 1 4 4 O 1.42903 * 109.47241 * 240.00044 * 2 1 3 5 5 C 1.42893 * 113.99910 * 89.99559 * 4 2 1 6 6 C 1.53000 * 109.47097 * 179.97438 * 5 4 2 7 7 C 1.50695 * 109.47436 * 180.02562 * 6 5 4 8 8 C 1.38236 * 120.00199 * 269.73192 * 7 6 5 9 9 C 1.38239 * 120.00269 * 179.76784 * 8 7 6 10 10 C 1.38234 * 119.99506 * 0.47715 * 9 8 7 11 11 C 1.38236 * 120.00304 * 359.80085 * 10 9 8 12 12 C 1.38230 * 119.99863 * 359.94628 * 11 10 9 13 13 C 1.50707 * 109.47213 * 119.99695 * 2 1 3 14 14 O 1.21277 * 119.99595 * 106.99379 * 13 2 1 15 15 N 1.34771 * 120.00036 * 286.99907 * 13 2 1 16 16 C 1.46503 * 120.00162 * 5.06857 * 15 13 2 17 17 C 1.50694 * 109.46696 * 95.68474 * 16 15 13 18 18 H 1.07998 * 120.00638 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00108 * 179.97438 * 17 16 15 20 20 N 1.31522 * 119.99763 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00351 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47153 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47243 * 120.00184 * 21 19 17 24 24 H 1.48506 * 109.46894 * 239.99845 * 21 19 17 25 25 C 1.46499 * 119.99686 * 185.07821 * 15 13 2 26 26 C 1.52992 * 109.47761 * 85.11004 * 25 15 13 27 27 C 1.47194 * 109.47681 * 184.94499 * 26 25 15 28 28 N 6.92671 * 121.00863 * 106.50596 * 2 1 3 29 29 H 1.08993 * 109.47353 * 187.50451 * 1 2 3 30 30 H 1.09007 * 109.47161 * 307.50378 * 1 2 3 31 31 H 1.08996 * 109.47454 * 67.49953 * 1 2 3 32 32 H 1.09006 * 109.46840 * 60.00526 * 5 4 2 33 33 H 1.08997 * 109.47913 * 300.00619 * 5 4 2 34 34 H 1.09006 * 109.46789 * 60.00564 * 6 5 4 35 35 H 1.08995 * 109.47608 * 300.00624 * 6 5 4 36 36 H 1.08002 * 119.99923 * 359.97438 * 8 7 6 37 37 H 1.07997 * 120.00182 * 180.25281 * 9 8 7 38 38 H 1.08000 * 119.99790 * 179.77040 * 10 9 8 39 39 H 1.07995 * 120.00101 * 179.97438 * 11 10 9 40 40 H 1.07997 * 120.00283 * 180.02562 * 12 11 10 41 41 H 1.08998 * 109.46995 * 215.68401 * 16 15 13 42 42 H 1.09000 * 109.46850 * 335.68591 * 16 15 13 43 43 H 0.96992 * 119.99750 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.46790 * 205.11036 * 25 15 13 45 45 H 1.09003 * 109.47119 * 325.10646 * 25 15 13 46 46 H 1.09008 * 109.47008 * 304.94592 * 26 25 15 47 47 H 1.09000 * 109.47154 * 64.93960 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2000 0.1829 -2.2940 6 6 2.7091 -0.6406 -3.4788 7 6 2.9139 0.2628 -4.6675 8 6 1.8811 0.4731 -5.5619 9 6 2.0675 1.3056 -6.6496 10 6 3.2898 1.9198 -6.8484 11 6 4.3244 1.7049 -5.9571 12 6 4.1364 0.8767 -4.8666 13 6 2.0324 -0.7104 1.2305 14 8 2.5239 -1.8149 1.1348 15 7 1.9353 -0.1182 2.4373 16 6 1.2425 1.1658 2.5696 17 6 -0.1848 0.9255 2.9893 18 1 -0.5402 -0.0827 3.1426 19 6 -1.0368 1.9929 3.1786 20 7 -0.6039 3.2208 2.9925 21 14 -2.8058 1.6951 3.6996 22 1 -3.0413 0.2357 3.8405 23 1 -3.0583 2.3656 5.0002 24 1 -3.7241 2.2473 2.6715 25 6 2.5228 -0.7585 3.6167 26 6 4.0025 -0.3828 3.7173 27 6 4.6210 -1.1187 4.8319 28 7 5.0984 -1.6867 5.6922 29 1 -0.3634 -1.0188 0.1342 30 1 -0.3634 0.6257 0.8153 31 1 -0.3634 0.3933 -0.9494 32 1 2.9319 0.9513 -2.0450 33 1 1.2538 0.6547 -2.5588 34 1 1.9775 -1.4093 -3.7280 35 1 3.6554 -1.1120 -3.2138 36 1 0.9275 -0.0103 -5.4090 37 1 1.2593 1.4732 -7.3462 38 1 3.4366 2.5673 -7.7002 39 1 5.2795 2.1845 -6.1126 40 1 4.9445 0.7091 -4.1700 41 1 1.7449 1.7739 3.3218 42 1 1.2569 1.6868 1.6123 43 1 -1.2032 3.9717 3.1260 44 1 2.0004 -0.4204 4.5117 45 1 2.4280 -1.8408 3.5277 46 1 4.5072 -0.6417 2.7864 47 1 4.0940 0.6889 3.8942 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294441673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:34 Heat of formation + Delta-G solvation = -40.269870 kcal Electronic energy + Delta-G solvation = -27490.627912 eV Core-core repulsion = 23638.309908 eV Total energy + Delta-G solvation = -3852.318004 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.71968 -39.40118 -37.52327 -36.55608 -35.24087 -33.70737 -33.00272 -31.71275 -31.05739 -30.13165 -28.32662 -27.34483 -24.86531 -23.70508 -23.15448 -22.74010 -22.20385 -21.03508 -18.64535 -17.45675 -17.04759 -16.87471 -16.58425 -16.21099 -15.78253 -15.37409 -15.08230 -14.85179 -14.66813 -14.61620 -14.20594 -13.86484 -13.58389 -13.34032 -13.13790 -13.04403 -12.69607 -12.54227 -12.43745 -12.35798 -12.14023 -11.93725 -11.70792 -11.59768 -11.36271 -11.26240 -11.18630 -11.04676 -10.96514 -10.82676 -10.65570 -10.61411 -10.22418 -9.87494 -9.48747 -9.09159 -8.95005 -8.86481 -8.65180 -7.95126 -6.32178 -4.38480 1.16222 1.23051 2.82787 2.94985 3.14698 3.21429 3.25268 3.29719 3.32666 3.62518 4.07056 4.22971 4.44711 4.67840 4.77484 4.87448 4.98088 5.01398 5.06685 5.10800 5.25276 5.32107 5.35225 5.38675 5.40209 5.48579 5.50242 5.66290 5.67646 5.78564 5.80884 5.94973 6.02895 6.04194 6.25630 6.28802 6.30965 6.33774 6.40316 6.49917 6.54695 6.83689 6.93482 7.06641 7.28672 7.48294 7.63081 7.70984 7.89079 8.13365 8.65757 8.85651 9.28533 10.73994 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009023 B = 0.003060 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.499185 B = 9147.058789 C =11376.598926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.081 3.919 3 H 0.083 0.917 4 O -0.366 6.366 5 C 0.068 3.932 6 C -0.079 4.079 7 C -0.078 4.078 8 C -0.114 4.114 9 C -0.120 4.120 10 C -0.126 4.126 11 C -0.120 4.120 12 C -0.115 4.115 13 C 0.521 3.479 14 O -0.549 6.549 15 N -0.595 5.595 16 C 0.231 3.769 17 C -0.538 4.538 18 H 0.066 0.934 19 C 0.068 3.932 20 N -0.887 5.887 21 Si 0.893 3.107 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.128 3.872 26 C -0.046 4.046 27 C 0.222 3.778 28 N -0.450 5.450 29 H 0.056 0.944 30 H 0.122 0.878 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.123 0.877 37 H 0.121 0.879 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.123 0.877 41 H 0.039 0.961 42 H 0.043 0.957 43 H 0.266 0.734 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.108 0.892 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.707 0.514 -15.303 16.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.021 3.979 3 H 0.101 0.899 4 O -0.284 6.284 5 C -0.009 4.009 6 C -0.116 4.116 7 C -0.078 4.078 8 C -0.132 4.132 9 C -0.138 4.138 10 C -0.144 4.144 11 C -0.138 4.138 12 C -0.133 4.133 13 C 0.308 3.692 14 O -0.427 6.427 15 N -0.327 5.327 16 C 0.111 3.889 17 C -0.577 4.577 18 H 0.084 0.916 19 C -0.136 4.136 20 N -0.524 5.524 21 Si 0.721 3.279 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.207 1.207 25 C 0.003 3.997 26 C -0.087 4.087 27 C -0.096 4.096 28 N -0.128 5.128 29 H 0.075 0.925 30 H 0.140 0.860 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.141 0.859 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.141 0.859 41 H 0.057 0.943 42 H 0.061 0.939 43 H 0.076 0.924 44 H 0.111 0.889 45 H 0.098 0.902 46 H 0.126 0.874 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.650 -0.906 -14.065 15.584 hybrid contribution -1.332 0.696 -0.083 1.505 sum 5.318 -0.210 -14.148 15.116 Atomic orbital electron populations 1.22562 0.92702 1.04208 1.04657 1.21866 0.96094 0.95583 0.84400 0.89925 1.87949 1.86812 1.34482 1.19169 1.22453 0.99561 0.92737 0.86185 1.20470 1.03213 0.96975 0.90979 1.19800 0.93927 0.97907 0.96145 1.21131 0.98751 0.98732 0.94626 1.21155 0.97405 0.97345 0.97877 1.21152 0.93572 1.00152 0.99547 1.21150 0.99065 0.98627 0.94951 1.21127 0.97074 0.97201 0.97867 1.20260 0.78398 0.85860 0.84633 1.90628 1.45973 1.19689 1.86447 1.48115 1.54550 1.24551 1.05507 1.19628 0.91876 0.78596 0.98772 1.21481 0.95199 0.93588 1.47383 0.91621 1.24933 0.98972 0.94893 0.94844 1.69915 1.36254 0.98207 1.48061 0.86502 0.84271 0.78710 0.78465 1.19497 1.20810 1.20745 1.21089 0.89488 0.99147 0.89972 1.19786 0.97063 0.99690 0.92190 1.29091 0.93202 0.93305 0.94006 1.81176 1.09873 1.10180 1.11565 0.92461 0.85982 0.92857 0.93317 0.93083 0.90022 0.90005 0.85874 0.86106 0.86268 0.86107 0.85881 0.94292 0.93908 0.92390 0.88873 0.90225 0.87389 0.87034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 9.20 37.16 0.34 -2.90 16 2 C 0.08 1.41 2.30 -27.88 -0.06 1.35 16 3 H 0.08 1.35 6.55 -51.93 -0.34 1.01 16 4 O -0.37 -6.19 9.55 -54.80 -0.52 -6.72 16 5 C 0.07 0.89 5.73 37.16 0.21 1.10 16 6 C -0.08 -0.89 5.72 -27.89 -0.16 -1.05 16 7 C -0.08 -0.82 5.13 -104.63 -0.54 -1.36 16 8 C -0.11 -1.13 9.70 -39.58 -0.38 -1.52 16 9 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 10 C -0.13 -1.09 10.05 -39.58 -0.40 -1.49 16 11 C -0.12 -1.07 10.05 -39.58 -0.40 -1.47 16 12 C -0.11 -1.13 9.70 -39.58 -0.38 -1.52 16 13 C 0.52 9.99 6.98 -10.98 -0.08 9.92 16 14 O -0.55 -11.86 16.18 -14.01 -0.23 -12.09 16 15 N -0.60 -10.78 2.47 -175.06 -0.43 -11.21 16 16 C 0.23 4.66 4.64 -5.19 -0.02 4.64 16 17 C -0.54 -12.28 7.01 -34.44 -0.24 -12.52 16 18 H 0.07 1.56 7.81 -52.49 -0.41 1.15 16 19 C 0.07 1.61 5.46 -17.81 -0.10 1.51 16 20 N -0.89 -22.10 13.29 55.43 0.74 -21.36 16 21 Si 0.89 19.05 29.54 -169.99 -5.02 14.03 16 22 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 C 0.13 2.02 5.37 -4.05 -0.02 1.99 16 26 C -0.05 -0.59 5.99 -29.53 -0.18 -0.76 16 27 C 0.22 3.19 15.43 -20.76 -0.32 2.87 16 28 N -0.45 -7.53 18.54 42.15 0.78 -6.75 16 29 H 0.06 1.04 8.13 -51.93 -0.42 0.61 16 30 H 0.12 2.43 4.37 -51.93 -0.23 2.20 16 31 H 0.05 0.83 7.75 -51.93 -0.40 0.43 16 32 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16 33 H 0.05 0.65 7.75 -51.93 -0.40 0.25 16 34 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.08 0.92 8.08 -51.93 -0.42 0.50 16 36 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 40 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 41 H 0.04 0.81 8.11 -51.93 -0.42 0.39 16 42 H 0.04 0.89 5.47 -51.93 -0.28 0.60 16 43 H 0.27 6.39 8.31 -40.82 -0.34 6.05 16 44 H 0.09 1.44 8.04 -51.93 -0.42 1.02 16 45 H 0.08 1.32 7.50 -51.93 -0.39 0.93 16 46 H 0.11 1.36 8.14 -51.92 -0.42 0.94 16 47 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 400.01 15.07 6.03 6.03 Total: -1.00 -28.55 400.01 -8.85 -37.41 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -7.07 Total: 3.33 kcal Atomic # 6 Polarization: 0.46 SS G_CDS: -3.13 Total: -2.67 kcal Atomic # 7 Polarization: -40.40 SS G_CDS: 1.09 Total: -39.32 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: -0.75 Total: -18.81 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -28.55 -8.85 -37.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294441673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.864 kcal (2) G-P(sol) polarization free energy of solvation -28.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds