Wall clock time and date at job start Tue Mar 31 2020 16:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47345 * 2 1 4 4 O 1.42903 * 109.47241 * 240.00044 * 2 1 3 5 5 C 1.42893 * 113.99910 * 89.99559 * 4 2 1 6 6 C 1.53000 * 109.47097 * 179.97438 * 5 4 2 7 7 C 1.50695 * 109.47436 * 180.02562 * 6 5 4 8 8 C 1.38236 * 120.00199 * 269.73192 * 7 6 5 9 9 C 1.38239 * 120.00269 * 179.76784 * 8 7 6 10 10 C 1.38234 * 119.99506 * 0.47715 * 9 8 7 11 11 C 1.38236 * 120.00304 * 359.80085 * 10 9 8 12 12 C 1.38230 * 119.99863 * 359.94628 * 11 10 9 13 13 C 1.50707 * 109.47213 * 119.99695 * 2 1 3 14 14 O 1.21277 * 119.99595 * 106.99379 * 13 2 1 15 15 N 1.34771 * 120.00036 * 286.99907 * 13 2 1 16 16 C 1.46503 * 120.00162 * 5.06857 * 15 13 2 17 17 C 1.50694 * 109.46696 * 95.68474 * 16 15 13 18 18 H 1.07998 * 120.00638 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00108 * 179.97438 * 17 16 15 20 20 N 1.31522 * 119.99763 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 120.00351 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47153 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47243 * 120.00184 * 21 19 17 24 24 H 1.48506 * 109.46894 * 239.99845 * 21 19 17 25 25 C 1.46499 * 119.99686 * 185.07821 * 15 13 2 26 26 C 1.52992 * 109.47761 * 85.11004 * 25 15 13 27 27 C 1.47194 * 109.47681 * 184.94499 * 26 25 15 28 28 N 6.92671 * 121.00863 * 106.50596 * 2 1 3 29 29 H 1.08993 * 109.47353 * 187.50451 * 1 2 3 30 30 H 1.09007 * 109.47161 * 307.50378 * 1 2 3 31 31 H 1.08996 * 109.47454 * 67.49953 * 1 2 3 32 32 H 1.09006 * 109.46840 * 60.00526 * 5 4 2 33 33 H 1.08997 * 109.47913 * 300.00619 * 5 4 2 34 34 H 1.09006 * 109.46789 * 60.00564 * 6 5 4 35 35 H 1.08995 * 109.47608 * 300.00624 * 6 5 4 36 36 H 1.08002 * 119.99923 * 359.97438 * 8 7 6 37 37 H 1.07997 * 120.00182 * 180.25281 * 9 8 7 38 38 H 1.08000 * 119.99790 * 179.77040 * 10 9 8 39 39 H 1.07995 * 120.00101 * 179.97438 * 11 10 9 40 40 H 1.07997 * 120.00283 * 180.02562 * 12 11 10 41 41 H 1.08998 * 109.46995 * 215.68401 * 16 15 13 42 42 H 1.09000 * 109.46850 * 335.68591 * 16 15 13 43 43 H 0.96992 * 119.99750 * 180.02562 * 20 19 17 44 44 H 1.09005 * 109.46790 * 205.11036 * 25 15 13 45 45 H 1.09003 * 109.47119 * 325.10646 * 25 15 13 46 46 H 1.09008 * 109.47008 * 304.94592 * 26 25 15 47 47 H 1.09000 * 109.47154 * 64.93960 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2000 0.1829 -2.2940 6 6 2.7091 -0.6406 -3.4788 7 6 2.9139 0.2628 -4.6675 8 6 1.8811 0.4731 -5.5619 9 6 2.0675 1.3056 -6.6496 10 6 3.2898 1.9198 -6.8484 11 6 4.3244 1.7049 -5.9571 12 6 4.1364 0.8767 -4.8666 13 6 2.0324 -0.7104 1.2305 14 8 2.5239 -1.8149 1.1348 15 7 1.9353 -0.1182 2.4373 16 6 1.2425 1.1658 2.5696 17 6 -0.1848 0.9255 2.9893 18 1 -0.5402 -0.0827 3.1426 19 6 -1.0368 1.9929 3.1786 20 7 -0.6039 3.2208 2.9925 21 14 -2.8058 1.6951 3.6996 22 1 -3.0413 0.2357 3.8405 23 1 -3.0583 2.3656 5.0002 24 1 -3.7241 2.2473 2.6715 25 6 2.5228 -0.7585 3.6167 26 6 4.0025 -0.3828 3.7173 27 6 4.6210 -1.1187 4.8319 28 7 5.0984 -1.6867 5.6922 29 1 -0.3634 -1.0188 0.1342 30 1 -0.3634 0.6257 0.8153 31 1 -0.3634 0.3933 -0.9494 32 1 2.9319 0.9513 -2.0450 33 1 1.2538 0.6547 -2.5588 34 1 1.9775 -1.4093 -3.7280 35 1 3.6554 -1.1120 -3.2138 36 1 0.9275 -0.0103 -5.4090 37 1 1.2593 1.4732 -7.3462 38 1 3.4366 2.5673 -7.7002 39 1 5.2795 2.1845 -6.1126 40 1 4.9445 0.7091 -4.1700 41 1 1.7449 1.7739 3.3218 42 1 1.2569 1.6868 1.6123 43 1 -1.2032 3.9717 3.1260 44 1 2.0004 -0.4204 4.5117 45 1 2.4280 -1.8408 3.5277 46 1 4.5072 -0.6417 2.7864 47 1 4.0940 0.6889 3.8942 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294441673.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:33 Heat of formation + Delta-G solvation = -52.126361 kcal Electronic energy + Delta-G solvation = -27491.142049 eV Core-core repulsion = 23638.309908 eV Total energy + Delta-G solvation = -3852.832140 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.13671 -40.18572 -38.76232 -37.82876 -36.79513 -34.82015 -34.47744 -33.07106 -31.73304 -31.40617 -29.27733 -29.02671 -26.20971 -24.99145 -24.56259 -23.52136 -23.41772 -21.82418 -20.09584 -18.74810 -18.42723 -18.18276 -17.85832 -17.40801 -16.83914 -16.57692 -16.36294 -15.98718 -15.91145 -15.75971 -15.44541 -15.13081 -14.61490 -14.33189 -14.31240 -14.21056 -13.99471 -13.76269 -13.65200 -13.50389 -13.45797 -13.29716 -13.13035 -12.84139 -12.72667 -12.66561 -12.48838 -12.28186 -12.06063 -11.97353 -11.89702 -11.78645 -11.75314 -11.60020 -10.83399 -10.54863 -10.29858 -9.78050 -9.60320 -9.51276 -8.14512 -6.23583 0.44702 0.53985 1.44175 1.51122 1.56928 1.57817 1.76078 1.77987 2.02913 2.46321 2.77519 2.99522 3.17994 3.23467 3.70837 3.92529 3.98973 4.01744 4.12856 4.17473 4.19982 4.21903 4.30780 4.34811 4.38521 4.49752 4.55034 4.65863 4.68502 4.83643 4.87706 4.92909 4.95957 4.99012 5.04532 5.05241 5.22246 5.22529 5.29672 5.56520 5.61494 5.66626 5.71338 5.75719 5.84699 6.13043 6.16198 6.20223 6.54004 6.56964 6.87507 7.31191 7.46665 8.90671 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009023 B = 0.003060 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3102.499185 B = 9147.058789 C =11376.598926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.084 3.916 3 H 0.095 0.905 4 O -0.383 6.383 5 C 0.064 3.936 6 C -0.071 4.071 7 C -0.092 4.092 8 C -0.127 4.127 9 C -0.127 4.127 10 C -0.130 4.130 11 C -0.127 4.127 12 C -0.127 4.127 13 C 0.518 3.482 14 O -0.576 6.576 15 N -0.591 5.591 16 C 0.243 3.757 17 C -0.534 4.534 18 H 0.053 0.947 19 C 0.033 3.967 20 N -0.911 5.911 21 Si 0.939 3.061 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.280 1.280 25 C 0.124 3.876 26 C -0.031 4.031 27 C 0.245 3.755 28 N -0.490 5.490 29 H 0.045 0.955 30 H 0.101 0.899 31 H 0.072 0.928 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.129 0.871 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.141 0.859 40 H 0.129 0.871 41 H 0.038 0.962 42 H 0.042 0.958 43 H 0.267 0.733 44 H 0.095 0.905 45 H 0.069 0.931 46 H 0.116 0.884 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.959 1.410 -16.554 17.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.024 3.976 3 H 0.113 0.887 4 O -0.302 6.302 5 C -0.012 4.012 6 C -0.108 4.108 7 C -0.092 4.092 8 C -0.145 4.145 9 C -0.145 4.145 10 C -0.148 4.148 11 C -0.144 4.144 12 C -0.145 4.145 13 C 0.306 3.694 14 O -0.457 6.457 15 N -0.322 5.322 16 C 0.123 3.877 17 C -0.573 4.573 18 H 0.071 0.929 19 C -0.169 4.169 20 N -0.550 5.550 21 Si 0.766 3.234 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.206 1.206 25 C -0.001 4.001 26 C -0.072 4.072 27 C -0.072 4.072 28 N -0.168 5.168 29 H 0.065 0.935 30 H 0.119 0.881 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.147 0.853 37 H 0.158 0.842 38 H 0.160 0.840 39 H 0.158 0.842 40 H 0.147 0.853 41 H 0.056 0.944 42 H 0.060 0.940 43 H 0.076 0.924 44 H 0.113 0.887 45 H 0.087 0.913 46 H 0.134 0.866 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 6.903 -0.012 -15.309 16.793 hybrid contribution -1.411 0.408 0.236 1.488 sum 5.492 0.396 -15.072 16.047 Atomic orbital electron populations 1.22424 0.92969 1.03070 1.04826 1.21791 0.95760 0.95899 0.84179 0.88739 1.87935 1.86776 1.35715 1.19756 1.22653 1.00129 0.92876 0.85547 1.20380 1.02863 0.96908 0.90694 1.19782 0.94679 0.98565 0.96189 1.21319 0.98955 0.99240 0.95031 1.21452 0.98288 0.96893 0.97847 1.21504 0.93255 0.99984 1.00039 1.21451 1.00143 0.98298 0.94547 1.21318 0.97088 0.97537 0.98592 1.20603 0.77919 0.85562 0.85303 1.90611 1.47355 1.20829 1.86857 1.48058 1.54177 1.23918 1.06038 1.19382 0.90708 0.79214 0.98435 1.21602 0.96461 0.92796 1.46452 0.92864 1.25401 1.01358 0.94866 0.95230 1.69968 1.37085 0.98629 1.49355 0.85787 0.81519 0.78124 0.77936 1.19867 1.21000 1.20623 1.21183 0.91336 0.98437 0.89131 1.19712 0.94711 1.00849 0.91900 1.29216 0.92240 0.92307 0.93432 1.81203 1.11173 1.11486 1.12907 0.93545 0.88059 0.90923 0.92635 0.92572 0.90191 0.90290 0.85293 0.84216 0.84019 0.84155 0.85257 0.94399 0.94007 0.92407 0.88654 0.91254 0.86622 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.08 9.20 71.98 0.66 -5.42 16 2 C 0.08 2.87 2.30 29.85 0.07 2.94 16 3 H 0.09 2.97 6.55 -2.39 -0.02 2.95 16 4 O -0.38 -12.72 9.55 -130.27 -1.24 -13.97 16 5 C 0.06 1.64 5.73 71.98 0.41 2.05 16 6 C -0.07 -1.57 5.72 29.85 0.17 -1.40 16 7 C -0.09 -1.86 5.13 -19.87 -0.10 -1.96 16 8 C -0.13 -2.38 9.70 22.27 0.22 -2.17 16 9 C -0.13 -2.04 10.05 22.27 0.22 -1.82 16 10 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 11 C -0.13 -2.02 10.05 22.27 0.22 -1.79 16 12 C -0.13 -2.37 9.70 22.27 0.22 -2.15 16 13 C 0.52 19.58 6.98 87.66 0.61 20.19 16 14 O -0.58 -24.75 16.18 15.69 0.25 -24.50 16 15 N -0.59 -20.91 2.47 -826.17 -2.04 -22.95 16 16 C 0.24 9.59 4.64 85.63 0.40 9.98 16 17 C -0.53 -24.10 7.01 25.60 0.18 -23.92 16 18 H 0.05 2.51 7.81 -2.91 -0.02 2.49 16 19 C 0.03 1.54 5.46 84.65 0.46 2.00 16 20 N -0.91 -44.77 13.29 21.45 0.28 -44.49 16 21 Si 0.94 38.68 29.54 68.60 2.03 40.71 16 22 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 23 H -0.28 -11.72 7.11 99.48 0.71 -11.02 16 24 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 25 C 0.12 3.77 5.37 86.38 0.46 4.24 16 26 C -0.03 -0.73 5.99 28.78 0.17 -0.56 16 27 C 0.25 6.75 15.43 89.44 1.38 8.13 16 28 N -0.49 -16.01 18.54 20.00 0.37 -15.64 16 29 H 0.05 1.67 8.13 -2.39 -0.02 1.65 16 30 H 0.10 3.98 4.37 -2.38 -0.01 3.97 16 31 H 0.07 2.18 7.75 -2.39 -0.02 2.16 16 32 H 0.06 1.33 8.09 -2.38 -0.02 1.31 16 33 H 0.06 1.36 7.75 -2.39 -0.02 1.34 16 34 H 0.08 1.75 8.08 -2.38 -0.02 1.73 16 35 H 0.08 1.75 8.08 -2.39 -0.02 1.74 16 36 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 37 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 38 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 40 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 41 H 0.04 1.53 8.11 -2.39 -0.02 1.51 16 42 H 0.04 1.69 5.47 -2.39 -0.01 1.67 16 43 H 0.27 12.63 8.31 -92.71 -0.77 11.86 16 44 H 0.10 2.86 8.04 -2.38 -0.02 2.84 16 45 H 0.07 2.27 7.50 -2.39 -0.02 2.25 16 46 H 0.12 2.69 8.14 -2.38 -0.02 2.67 16 47 H 0.14 2.65 8.14 -2.39 -0.02 2.63 16 Total: -1.00 -59.64 400.01 6.60 -53.04 By element: Atomic # 1 Polarization: 20.23 SS G_CDS: 0.96 Total: 21.19 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 5.98 Total: 6.60 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -1.38 Total: -83.08 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -0.99 Total: -38.47 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -59.64 6.60 -53.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294441673.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.917 kcal (2) G-P(sol) polarization free energy of solvation -59.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds