Wall clock time and date at job start Tue Mar 31 2020 15:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46876 * 2 1 4 4 C 1.50696 * 109.46643 * 240.00197 * 2 1 3 5 5 H 1.08002 * 119.99946 * 239.99130 * 4 2 1 6 6 C 1.37875 * 120.00091 * 60.00058 * 4 2 1 7 7 N 1.31512 * 120.00065 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99966 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47000 * 89.99998 * 8 6 4 10 10 H 1.48496 * 109.47555 * 210.00184 * 8 6 4 11 11 H 1.48500 * 109.47553 * 330.00423 * 8 6 4 12 12 N 1.46494 * 109.47207 * 120.00123 * 2 1 3 13 13 C 1.34776 * 120.00526 * 275.00003 * 12 2 1 14 14 O 1.21286 * 119.99656 * 353.37053 * 13 12 2 15 15 C 1.50697 * 120.00559 * 173.36658 * 13 12 2 16 16 C 1.52999 * 109.87580 * 195.97967 * 15 13 12 17 17 C 1.54329 * 109.87683 * 74.96791 * 15 13 12 18 18 C 1.55153 * 102.94135 * 262.77440 * 17 15 13 19 19 C 1.54908 * 101.58332 * 324.50143 * 18 17 15 20 20 N 1.47016 * 109.88534 * 317.16058 * 15 13 12 21 21 C 1.34777 * 125.64726 * 300.42880 * 20 15 13 22 22 O 1.21556 * 119.99856 * 358.46829 * 21 20 15 23 23 C 1.47847 * 120.00210 * 178.46797 * 21 20 15 24 24 C 1.39581 * 120.14086 * 15.06837 * 23 21 20 25 25 C 1.37961 * 119.85007 * 179.78888 * 24 23 21 26 26 C 1.38350 * 120.14421 * 0.48813 * 25 24 23 27 27 C 1.38363 * 120.29318 * 359.74156 * 26 25 24 28 28 C 1.37954 * 120.14802 * 0.02578 * 27 26 25 29 29 H 1.09000 * 109.47397 * 59.99571 * 1 2 3 30 30 H 1.08998 * 109.46876 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47068 * 299.99955 * 1 2 3 32 32 H 0.97005 * 119.99710 * 179.97438 * 7 6 4 33 33 H 0.97003 * 119.99904 * 94.99869 * 12 2 1 34 34 H 1.09000 * 109.46945 * 59.30006 * 16 15 13 35 35 H 1.09001 * 109.47195 * 179.30063 * 16 15 13 36 36 H 1.09003 * 109.47206 * 299.30020 * 16 15 13 37 37 H 1.08992 * 110.72120 * 21.13843 * 17 15 13 38 38 H 1.09004 * 110.72062 * 144.41325 * 17 15 13 39 39 H 1.09003 * 111.00502 * 82.57113 * 18 17 15 40 40 H 1.09000 * 111.00598 * 206.39028 * 18 17 15 41 41 H 1.09003 * 110.37124 * 155.84964 * 19 18 17 42 42 H 1.09003 * 110.36823 * 278.05733 * 19 18 17 43 43 H 1.08003 * 120.07393 * 0.02562 * 24 23 21 44 44 H 1.08001 * 119.92544 * 180.23169 * 25 24 23 45 45 H 1.08002 * 119.85430 * 179.72035 * 26 25 24 46 46 H 1.08004 * 119.92392 * 179.97438 * 27 26 25 47 47 H 1.07998 * 120.07588 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6033 8 14 2.3223 -1.1194 -4.0080 9 1 1.3445 -2.1614 -4.4123 10 1 2.4871 -0.1402 -5.1121 11 1 3.6306 -1.7566 -3.7121 12 7 2.0184 -0.6906 1.1961 13 6 2.1472 -0.0184 2.3571 14 8 1.9749 1.1819 2.3852 15 6 2.5050 -0.7579 3.6204 16 6 2.2068 0.1186 4.8385 17 6 4.0008 -1.1374 3.6005 18 6 3.9800 -2.6062 3.1008 19 6 2.6829 -3.1400 3.7582 20 7 1.7382 -2.0096 3.7014 21 6 0.3941 -2.1075 3.7214 22 8 -0.2888 -1.1021 3.6983 23 6 -0.2496 -3.4375 3.7713 24 6 0.4983 -4.5658 4.1115 25 6 -0.1095 -5.8034 4.1605 26 6 -1.4549 -5.9289 3.8637 27 6 -2.2009 -4.8150 3.5211 28 6 -1.6066 -3.5711 3.4730 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.7086 1.1614 -3.4844 33 1 2.2491 -1.6318 1.1525 34 1 1.1482 0.3780 4.8490 35 1 2.4563 -0.4270 5.7486 36 1 2.8036 1.0292 4.7857 37 1 4.5507 -0.5018 2.9066 38 1 4.4275 -1.0767 4.6017 39 1 3.9128 -2.6481 2.0137 40 1 4.8530 -3.1527 3.4577 41 1 2.2936 -3.9884 3.1953 42 1 2.8721 -3.4268 4.7927 43 1 1.5496 -4.4697 4.3395 44 1 0.4672 -6.6767 4.4272 45 1 -1.9250 -6.9006 3.8991 46 1 -3.2508 -4.9199 3.2901 47 1 -2.1898 -2.7025 3.2051 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330822282.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:23 Heat of formation + Delta-G solvation = -21.906050 kcal Electronic energy + Delta-G solvation = -29849.720714 eV Core-core repulsion = 25998.199025 eV Total energy + Delta-G solvation = -3851.521689 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.02916 -39.28197 -37.87649 -37.08632 -34.78586 -32.76735 -32.25022 -31.38512 -31.08412 -30.36216 -28.81592 -26.16436 -25.19943 -24.54254 -22.90313 -22.72581 -22.02219 -20.78244 -19.95406 -18.84392 -17.69703 -17.07972 -16.57079 -16.04669 -15.68786 -15.19034 -14.92815 -14.77816 -14.41655 -14.25391 -14.09607 -14.00930 -13.51932 -13.27649 -13.15627 -13.03713 -12.78022 -12.56987 -12.36834 -12.12693 -11.86327 -11.77920 -11.51425 -11.40995 -11.15907 -11.03579 -10.90946 -10.88735 -10.67813 -10.59840 -10.28234 -10.17401 -9.71988 -9.35507 -9.09614 -9.07807 -8.96407 -8.52549 -8.38174 -7.78635 -6.07391 -4.16697 0.79461 1.22693 2.72602 2.91286 3.25572 3.32016 3.33994 3.53098 3.77783 4.10078 4.33297 4.36295 4.42363 4.61015 4.75448 4.77902 4.83310 4.95156 5.00345 5.19517 5.23113 5.24263 5.32408 5.35693 5.53661 5.58564 5.65096 5.68001 5.81773 5.82766 5.84796 5.95198 6.09563 6.18286 6.21411 6.30076 6.42037 6.51635 6.75042 6.93547 7.12650 7.25775 7.47664 7.56435 7.64932 7.76117 7.99361 8.21987 8.25131 8.74639 8.83744 9.20573 9.50621 10.98486 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010347 B = 0.004634 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.564872 B = 6040.496529 C = 7140.174855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.531 4.531 5 H 0.058 0.942 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.701 5.701 13 C 0.510 3.490 14 O -0.546 6.546 15 C 0.145 3.855 16 C -0.138 4.138 17 C -0.119 4.119 18 C -0.139 4.139 19 C 0.082 3.918 20 N -0.604 5.604 21 C 0.572 3.428 22 O -0.512 6.512 23 C -0.123 4.123 24 C -0.118 4.118 25 C -0.131 4.131 26 C -0.100 4.100 27 C -0.128 4.128 28 C -0.058 4.058 29 H 0.088 0.912 30 H 0.022 0.978 31 H 0.015 0.985 32 H 0.264 0.736 33 H 0.384 0.616 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.077 0.923 43 H 0.153 0.847 44 H 0.126 0.874 45 H 0.124 0.876 46 H 0.128 0.872 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.704 -15.537 15.809 22.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.163 3.837 3 H 0.066 0.934 4 C -0.569 4.569 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.348 5.348 13 C 0.292 3.708 14 O -0.423 6.423 15 C 0.057 3.943 16 C -0.197 4.197 17 C -0.157 4.157 18 C -0.177 4.177 19 C -0.041 4.041 20 N -0.340 5.340 21 C 0.361 3.639 22 O -0.387 6.387 23 C -0.126 4.126 24 C -0.136 4.136 25 C -0.149 4.149 26 C -0.118 4.118 27 C -0.146 4.146 28 C -0.077 4.077 29 H 0.106 0.894 30 H 0.041 0.959 31 H 0.034 0.966 32 H 0.074 0.926 33 H 0.216 0.784 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.095 0.905 43 H 0.170 0.830 44 H 0.144 0.856 45 H 0.142 0.858 46 H 0.146 0.854 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.988 -13.965 15.627 21.051 hybrid contribution 0.298 -1.051 -0.969 1.461 sum 2.286 -15.016 14.657 21.108 Atomic orbital electron populations 1.22020 0.98366 0.98892 1.00756 1.18732 0.91016 0.93975 0.79964 0.93393 1.21183 1.32337 1.13038 0.90391 0.92350 1.24882 0.94876 0.94950 0.98973 1.69916 1.35868 1.22426 1.23755 0.86473 0.79092 0.79287 0.82367 1.20616 1.21064 1.19904 1.46413 1.64683 1.13246 1.10456 1.20275 0.77880 0.87812 0.84808 1.90648 1.51231 1.14490 1.85974 1.21368 0.91987 0.85110 0.95805 1.21885 1.04405 0.99090 0.94285 1.22711 0.92967 0.96922 1.03123 1.22935 0.97156 0.95712 1.01918 1.22959 0.89671 0.90524 1.00900 1.48402 1.04640 1.07116 1.73878 1.17997 0.80287 0.89046 0.76560 1.90847 1.61967 1.37535 1.48367 1.19880 0.94911 0.92876 1.04900 1.22404 1.01362 0.92047 0.97752 1.21119 0.95118 0.97376 1.01257 1.21366 0.94393 0.98702 0.97327 1.21159 1.00385 0.92314 1.00729 1.21332 0.93344 0.98231 0.94806 0.89366 0.95877 0.96558 0.92633 0.78385 0.90721 0.92523 0.90754 0.89226 0.89550 0.89708 0.89126 0.88653 0.90518 0.82982 0.85582 0.85817 0.85396 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.26 37.16 0.34 -3.51 16 2 C 0.26 7.13 2.62 -69.08 -0.18 6.95 16 3 H 0.05 1.48 7.49 -51.93 -0.39 1.10 16 4 C -0.53 -14.48 8.73 -34.44 -0.30 -14.79 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.83 5.30 -17.82 -0.09 1.73 16 7 N -0.88 -25.59 11.32 55.43 0.63 -24.97 16 8 Si 0.90 20.98 29.54 -169.99 -5.02 15.95 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.70 -15.66 4.94 -54.94 -0.27 -15.93 16 13 C 0.51 11.02 5.67 -10.99 -0.06 10.96 16 14 O -0.55 -14.16 15.68 5.55 0.09 -14.07 16 15 C 0.15 2.29 0.70 -132.00 -0.09 2.20 16 16 C -0.14 -2.15 7.82 37.16 0.29 -1.86 16 17 C -0.12 -1.37 6.01 -24.90 -0.15 -1.52 16 18 C -0.14 -1.27 6.84 -24.59 -0.17 -1.44 16 19 C 0.08 0.76 4.98 -2.53 -0.01 0.75 16 20 N -0.60 -8.56 2.44 -158.16 -0.39 -8.95 16 21 C 0.57 9.56 7.33 -12.33 -0.09 9.47 16 22 O -0.51 -10.81 14.90 5.32 0.08 -10.73 16 23 C -0.12 -1.69 5.84 -104.97 -0.61 -2.30 16 24 C -0.12 -1.20 8.19 -39.18 -0.32 -1.52 16 25 C -0.13 -1.14 10.03 -39.64 -0.40 -1.54 16 26 C -0.10 -0.89 10.04 -39.49 -0.40 -1.29 16 27 C -0.13 -1.35 10.03 -39.64 -0.40 -1.74 16 28 C -0.06 -0.78 9.59 -39.19 -0.38 -1.16 16 29 H 0.09 2.55 6.07 -51.93 -0.32 2.24 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 33 H 0.38 7.64 7.09 -40.82 -0.29 7.35 16 34 H 0.07 1.39 6.85 -51.93 -0.36 1.04 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.15 7.97 -51.93 -0.41 0.73 16 37 H 0.09 1.14 7.82 -51.93 -0.41 0.74 16 38 H 0.09 0.77 7.85 -51.93 -0.41 0.37 16 39 H 0.08 0.90 7.22 -51.93 -0.37 0.53 16 40 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.80 5.59 -51.93 -0.29 0.51 16 42 H 0.08 0.52 7.55 -51.93 -0.39 0.13 16 43 H 0.15 1.19 3.55 -52.48 -0.19 1.00 16 44 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 45 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 47 H 0.14 1.96 7.73 -52.49 -0.41 1.56 16 LS Contribution 374.69 15.07 5.65 5.65 Total: -1.00 -35.56 374.69 -8.98 -44.54 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -6.73 Total: 9.09 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -3.02 Total: -0.59 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.03 Total: -49.84 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: 0.17 Total: -24.80 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.56 -8.98 -44.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330822282.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.633 kcal (2) G-P(sol) polarization free energy of solvation -35.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds