Wall clock time and date at job start Tue Mar 31 2020 15:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46876 * 2 1 4 4 C 1.50696 * 109.46643 * 240.00197 * 2 1 3 5 5 H 1.08002 * 119.99946 * 239.99130 * 4 2 1 6 6 C 1.37875 * 120.00091 * 60.00058 * 4 2 1 7 7 N 1.31512 * 120.00065 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 119.99966 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47000 * 89.99998 * 8 6 4 10 10 H 1.48496 * 109.47555 * 210.00184 * 8 6 4 11 11 H 1.48500 * 109.47553 * 330.00423 * 8 6 4 12 12 N 1.46494 * 109.47207 * 120.00123 * 2 1 3 13 13 C 1.34776 * 120.00526 * 275.00003 * 12 2 1 14 14 O 1.21286 * 119.99656 * 353.37053 * 13 12 2 15 15 C 1.50697 * 120.00559 * 173.36658 * 13 12 2 16 16 C 1.52999 * 109.87580 * 195.97967 * 15 13 12 17 17 C 1.54329 * 109.87683 * 74.96791 * 15 13 12 18 18 C 1.55153 * 102.94135 * 262.77440 * 17 15 13 19 19 C 1.54908 * 101.58332 * 324.50143 * 18 17 15 20 20 N 1.47016 * 109.88534 * 317.16058 * 15 13 12 21 21 C 1.34777 * 125.64726 * 300.42880 * 20 15 13 22 22 O 1.21556 * 119.99856 * 358.46829 * 21 20 15 23 23 C 1.47847 * 120.00210 * 178.46797 * 21 20 15 24 24 C 1.39581 * 120.14086 * 15.06837 * 23 21 20 25 25 C 1.37961 * 119.85007 * 179.78888 * 24 23 21 26 26 C 1.38350 * 120.14421 * 0.48813 * 25 24 23 27 27 C 1.38363 * 120.29318 * 359.74156 * 26 25 24 28 28 C 1.37954 * 120.14802 * 0.02578 * 27 26 25 29 29 H 1.09000 * 109.47397 * 59.99571 * 1 2 3 30 30 H 1.08998 * 109.46876 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47068 * 299.99955 * 1 2 3 32 32 H 0.97005 * 119.99710 * 179.97438 * 7 6 4 33 33 H 0.97003 * 119.99904 * 94.99869 * 12 2 1 34 34 H 1.09000 * 109.46945 * 59.30006 * 16 15 13 35 35 H 1.09001 * 109.47195 * 179.30063 * 16 15 13 36 36 H 1.09003 * 109.47206 * 299.30020 * 16 15 13 37 37 H 1.08992 * 110.72120 * 21.13843 * 17 15 13 38 38 H 1.09004 * 110.72062 * 144.41325 * 17 15 13 39 39 H 1.09003 * 111.00502 * 82.57113 * 18 17 15 40 40 H 1.09000 * 111.00598 * 206.39028 * 18 17 15 41 41 H 1.09003 * 110.37124 * 155.84964 * 19 18 17 42 42 H 1.09003 * 110.36823 * 278.05733 * 19 18 17 43 43 H 1.08003 * 120.07393 * 0.02562 * 24 23 21 44 44 H 1.08001 * 119.92544 * 180.23169 * 25 24 23 45 45 H 1.08002 * 119.85430 * 179.72035 * 26 25 24 46 46 H 1.08004 * 119.92392 * 179.97438 * 27 26 25 47 47 H 1.07998 * 120.07588 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6991 -0.2393 -2.4827 7 7 0.9427 0.8297 -2.6033 8 14 2.3223 -1.1194 -4.0080 9 1 1.3445 -2.1614 -4.4123 10 1 2.4871 -0.1402 -5.1121 11 1 3.6306 -1.7566 -3.7121 12 7 2.0184 -0.6906 1.1961 13 6 2.1472 -0.0184 2.3571 14 8 1.9749 1.1819 2.3852 15 6 2.5050 -0.7579 3.6204 16 6 2.2068 0.1186 4.8385 17 6 4.0008 -1.1374 3.6005 18 6 3.9800 -2.6062 3.1008 19 6 2.6829 -3.1400 3.7582 20 7 1.7382 -2.0096 3.7014 21 6 0.3941 -2.1075 3.7214 22 8 -0.2888 -1.1021 3.6983 23 6 -0.2496 -3.4375 3.7713 24 6 0.4983 -4.5658 4.1115 25 6 -0.1095 -5.8034 4.1605 26 6 -1.4549 -5.9289 3.8637 27 6 -2.2009 -4.8150 3.5211 28 6 -1.6066 -3.5711 3.4730 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 0.7086 1.1614 -3.4844 33 1 2.2491 -1.6318 1.1525 34 1 1.1482 0.3780 4.8490 35 1 2.4563 -0.4270 5.7486 36 1 2.8036 1.0292 4.7857 37 1 4.5507 -0.5018 2.9066 38 1 4.4275 -1.0767 4.6017 39 1 3.9128 -2.6481 2.0137 40 1 4.8530 -3.1527 3.4577 41 1 2.2936 -3.9884 3.1953 42 1 2.8721 -3.4268 4.7927 43 1 1.5496 -4.4697 4.3395 44 1 0.4672 -6.6767 4.4272 45 1 -1.9250 -6.9006 3.8991 46 1 -3.2508 -4.9199 3.2901 47 1 -2.1898 -2.7025 3.2051 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330822282.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:22 Heat of formation + Delta-G solvation = -46.473585 kcal Electronic energy + Delta-G solvation = -29850.786042 eV Core-core repulsion = 25998.199025 eV Total energy + Delta-G solvation = -3852.587017 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.23972 -40.52318 -39.15353 -38.36671 -36.84496 -34.32830 -33.83869 -32.40527 -31.89559 -31.30335 -30.91488 -27.45100 -27.18603 -25.70604 -24.22476 -23.65989 -23.00838 -22.07225 -21.59463 -20.49244 -19.04527 -18.19488 -17.89915 -17.37548 -17.27311 -16.67252 -16.39431 -15.99921 -15.81578 -15.48842 -15.29491 -15.03524 -14.84328 -14.59548 -14.53460 -14.19762 -14.04102 -13.84755 -13.74589 -13.53825 -13.30847 -13.10567 -12.99694 -12.86790 -12.75910 -12.64215 -12.39005 -12.23546 -12.18038 -12.09971 -11.84055 -11.48479 -11.18530 -10.98162 -10.87258 -10.65210 -9.99488 -9.89677 -9.80012 -9.68118 -8.20947 -6.40336 -0.09647 0.43873 1.41465 1.43388 1.46004 1.54503 1.82649 2.00138 2.31980 2.57266 2.90843 3.08758 3.35646 3.52827 3.67992 3.69833 3.94542 4.02588 4.08382 4.17769 4.24955 4.39438 4.50590 4.53358 4.55364 4.59123 4.60063 4.75207 4.80108 4.81149 4.84535 4.93566 4.99677 5.07940 5.11588 5.15876 5.26557 5.29539 5.32995 5.40574 5.46496 5.53236 5.54181 5.57732 5.80696 5.99445 6.01137 6.39237 6.66447 6.88266 7.06405 7.26809 7.47870 8.86107 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.010347 B = 0.004634 C = 0.003921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.564872 B = 6040.496529 C = 7140.174855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.273 3.727 3 H -0.004 1.004 4 C -0.544 4.544 5 H 0.075 0.925 6 C 0.011 3.989 7 N -0.920 5.920 8 Si 0.979 3.021 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.258 1.258 12 N -0.695 5.695 13 C 0.499 3.501 14 O -0.601 6.601 15 C 0.148 3.852 16 C -0.133 4.133 17 C -0.113 4.113 18 C -0.130 4.130 19 C 0.072 3.928 20 N -0.601 5.601 21 C 0.560 3.440 22 O -0.579 6.579 23 C -0.150 4.150 24 C -0.110 4.110 25 C -0.122 4.122 26 C -0.092 4.092 27 C -0.134 4.134 28 C -0.091 4.091 29 H 0.069 0.931 30 H 0.028 0.972 31 H -0.007 1.007 32 H 0.266 0.734 33 H 0.398 0.602 34 H 0.030 0.970 35 H 0.098 0.902 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.126 0.874 39 H 0.065 0.935 40 H 0.138 0.862 41 H 0.111 0.889 42 H 0.121 0.879 43 H 0.182 0.818 44 H 0.169 0.831 45 H 0.159 0.841 46 H 0.142 0.858 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.601 -21.173 16.889 27.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.169 3.831 3 H 0.014 0.986 4 C -0.582 4.582 5 H 0.093 0.907 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.803 3.197 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.181 1.181 12 N -0.343 5.343 13 C 0.285 3.715 14 O -0.482 6.482 15 C 0.059 3.941 16 C -0.191 4.191 17 C -0.152 4.152 18 C -0.168 4.168 19 C -0.048 4.048 20 N -0.335 5.335 21 C 0.352 3.648 22 O -0.459 6.459 23 C -0.153 4.153 24 C -0.127 4.127 25 C -0.139 4.139 26 C -0.110 4.110 27 C -0.152 4.152 28 C -0.111 4.111 29 H 0.088 0.912 30 H 0.047 0.953 31 H 0.012 0.988 32 H 0.075 0.925 33 H 0.233 0.767 34 H 0.050 0.950 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.144 0.856 39 H 0.084 0.916 40 H 0.156 0.844 41 H 0.129 0.871 42 H 0.139 0.861 43 H 0.199 0.801 44 H 0.187 0.813 45 H 0.176 0.824 46 H 0.160 0.840 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 4.936 -19.678 16.736 26.300 hybrid contribution -0.667 0.715 -1.261 1.596 sum 4.269 -18.963 15.475 24.845 Atomic orbital electron populations 1.21803 0.99146 0.98423 0.98621 1.18311 0.90306 0.92043 0.82438 0.98634 1.21456 1.32760 1.13536 0.90465 0.90687 1.25918 0.94744 0.95543 1.02625 1.70082 1.36984 1.24092 1.24702 0.85240 0.79134 0.77933 0.77404 1.19673 1.21094 1.18149 1.46145 1.64735 1.13720 1.09732 1.21528 0.76038 0.87565 0.86338 1.90605 1.53350 1.17320 1.86963 1.21358 0.95343 0.85622 0.91761 1.21851 1.01501 0.99628 0.96099 1.22796 0.88755 0.98357 1.05246 1.23001 0.98841 0.94036 1.00880 1.23458 0.88336 0.89057 1.03934 1.48516 1.04476 1.08013 1.72501 1.18694 0.80956 0.89636 0.75503 1.90813 1.63671 1.39859 1.51558 1.19803 0.95171 0.92507 1.07770 1.22718 1.02433 0.91185 0.96370 1.21642 0.95178 0.97935 0.99178 1.21835 0.94749 0.99261 0.95117 1.21372 1.01425 0.91705 1.00653 1.21290 0.93844 0.98656 0.97281 0.91237 0.95272 0.98768 0.92496 0.76689 0.95047 0.88337 0.91344 0.90943 0.85604 0.91621 0.84357 0.87118 0.86098 0.80104 0.81342 0.82354 0.84005 0.88143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -7.11 9.26 71.98 0.67 -6.45 16 2 C 0.27 15.65 2.62 44.25 0.12 15.76 16 3 H 0.00 -0.28 7.49 -2.39 -0.02 -0.30 16 4 C -0.54 -30.32 8.73 25.60 0.22 -30.10 16 5 H 0.08 3.84 7.74 -2.91 -0.02 3.82 16 6 C 0.01 0.64 5.30 84.65 0.45 1.09 16 7 N -0.92 -55.49 11.32 21.45 0.24 -55.25 16 8 Si 0.98 42.92 29.54 68.60 2.03 44.95 16 9 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 10 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 12 N -0.70 -32.69 4.94 -446.11 -2.20 -34.89 16 13 C 0.50 23.01 5.67 87.66 0.50 23.51 16 14 O -0.60 -34.09 15.68 -3.05 -0.05 -34.14 16 15 C 0.15 4.67 0.70 3.21 0.00 4.67 16 16 C -0.13 -4.21 7.82 71.98 0.56 -3.65 16 17 C -0.11 -2.30 6.01 31.78 0.19 -2.11 16 18 C -0.13 -1.77 6.84 31.98 0.22 -1.55 16 19 C 0.07 1.00 4.98 86.85 0.43 1.43 16 20 N -0.60 -16.46 2.44 -772.58 -1.89 -18.34 16 21 C 0.56 19.54 7.33 86.79 0.64 20.17 16 22 O -0.58 -27.01 14.90 -3.89 -0.06 -27.06 16 23 C -0.15 -4.10 5.84 -20.09 -0.12 -4.22 16 24 C -0.11 -1.83 8.19 22.53 0.18 -1.64 16 25 C -0.12 -1.48 10.03 22.23 0.22 -1.26 16 26 C -0.09 -1.28 10.04 22.33 0.22 -1.05 16 27 C -0.13 -2.69 10.03 22.23 0.22 -2.47 16 28 C -0.09 -2.61 9.59 22.52 0.22 -2.40 16 29 H 0.07 4.32 6.07 -2.39 -0.01 4.30 16 30 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 31 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 32 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 33 H 0.40 16.14 7.09 -92.71 -0.66 15.49 16 34 H 0.03 1.26 6.85 -2.39 -0.02 1.24 16 35 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.07 2.20 7.97 -2.39 -0.02 2.18 16 37 H 0.07 1.76 7.82 -2.39 -0.02 1.74 16 38 H 0.13 1.62 7.85 -2.38 -0.02 1.60 16 39 H 0.07 1.18 7.22 -2.39 -0.02 1.16 16 40 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.11 1.28 5.59 -2.39 -0.01 1.27 16 42 H 0.12 0.76 7.55 -2.39 -0.02 0.74 16 43 H 0.18 1.79 3.55 -2.91 -0.01 1.78 16 44 H 0.17 0.71 8.06 -2.91 -0.02 0.69 16 45 H 0.16 1.13 8.06 -2.91 -0.02 1.11 16 46 H 0.14 2.29 8.06 -2.91 -0.02 2.27 16 47 H 0.10 3.42 7.73 -2.91 -0.02 3.39 16 Total: -1.00 -89.88 374.69 3.36 -86.52 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 0.34 Total: 28.47 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 4.95 Total: 9.75 kcal Atomic # 7 Polarization: -104.64 SS G_CDS: -3.85 Total: -108.49 kcal Atomic # 8 Polarization: -61.10 SS G_CDS: -0.11 Total: -61.20 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -89.88 3.36 -86.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330822282.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.051 kcal (2) G-P(sol) polarization free energy of solvation -89.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds