Wall clock time and date at job start Tue Mar 31 2020 15:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47299 * 2 1 4 4 C 1.50695 * 109.47030 * 119.99952 * 2 1 3 5 5 H 1.08006 * 120.00056 * 119.99947 * 4 2 1 6 6 C 1.37878 * 120.00066 * 299.99950 * 4 2 1 7 7 N 1.31515 * 120.00222 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99958 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47490 * 89.99739 * 8 6 4 10 10 H 1.48502 * 109.46881 * 209.99853 * 8 6 4 11 11 H 1.48510 * 109.47020 * 329.99608 * 8 6 4 12 12 N 1.46497 * 109.46881 * 240.00013 * 2 1 3 13 13 C 1.34773 * 120.00354 * 85.00115 * 12 2 1 14 14 O 1.21283 * 119.99954 * 355.91474 * 13 12 2 15 15 C 1.50699 * 120.00109 * 175.91641 * 13 12 2 16 16 C 1.53000 * 109.87554 * 100.92944 * 15 13 12 17 17 C 1.54331 * 109.88094 * 222.10245 * 15 13 12 18 18 C 1.55149 * 102.94331 * 97.22572 * 17 15 13 19 19 C 1.54910 * 101.58389 * 35.50113 * 18 17 15 20 20 N 1.47019 * 109.88579 * 339.90825 * 15 13 12 21 21 C 1.34777 * 125.64774 * 59.48657 * 20 15 13 22 22 O 1.21553 * 119.99988 * 6.20997 * 21 20 15 23 23 C 1.47840 * 120.00181 * 186.20892 * 21 20 15 24 24 C 1.39579 * 120.14478 * 342.15544 * 23 21 20 25 25 C 1.37955 * 119.85406 * 179.79196 * 24 23 21 26 26 C 1.38357 * 120.14315 * 0.49147 * 25 24 23 27 27 C 1.38359 * 120.29355 * 359.74011 * 26 25 24 28 28 C 1.37953 * 120.14497 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47144 * 59.99847 * 1 2 3 30 30 H 1.08998 * 109.47299 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46784 * 300.00200 * 1 2 3 32 32 H 0.96994 * 120.00318 * 180.02562 * 7 6 4 33 33 H 0.97005 * 119.99708 * 265.00032 * 12 2 1 34 34 H 1.08998 * 109.47442 * 60.69429 * 16 15 13 35 35 H 1.09002 * 109.46888 * 180.69949 * 16 15 13 36 36 H 1.08998 * 109.46976 * 300.69503 * 16 15 13 37 37 H 1.09000 * 110.71919 * 215.59069 * 17 15 13 38 38 H 1.09001 * 110.71945 * 338.85516 * 17 15 13 39 39 H 1.09000 * 111.00441 * 277.42505 * 18 17 15 40 40 H 1.08999 * 111.00367 * 153.57874 * 18 17 15 41 41 H 1.09000 * 110.36564 * 204.15450 * 19 18 17 42 42 H 1.08992 * 110.46185 * 81.87702 * 19 18 17 43 43 H 1.07999 * 120.07037 * 0.02562 * 24 23 21 44 44 H 1.07994 * 119.92952 * 180.23130 * 25 24 23 45 45 H 1.08007 * 119.85303 * 179.76800 * 26 25 24 46 46 H 1.08005 * 119.92804 * 179.97438 * 27 26 25 47 47 H 1.08002 * 120.07210 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5441 4.4119 10 1 1.3444 -0.9489 5.1123 11 1 2.4880 -2.5654 3.7122 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.7893 1.1382 -2.4311 15 6 2.7355 -0.7036 -3.5634 16 6 1.6169 -1.1354 -4.5137 17 6 3.7052 0.2527 -4.2893 18 6 5.0917 -0.1758 -3.7405 19 6 4.9077 -1.7067 -3.5915 20 7 3.5141 -1.8772 -3.1416 21 6 3.0337 -2.9336 -2.4564 22 8 1.8421 -3.0224 -2.2332 23 6 3.9559 -3.9846 -1.9760 24 6 5.2343 -4.0994 -2.5244 25 6 6.0915 -5.0796 -2.0687 26 6 5.6828 -5.9541 -1.0775 27 6 4.4152 -5.8487 -0.5331 28 6 3.5499 -4.8700 -0.9764 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.7096 1.1619 3.4844 33 1 2.2490 -1.6318 -1.1526 34 1 1.0632 -0.2573 -4.8460 35 1 2.0488 -1.6410 -5.3774 36 1 0.9416 -1.8156 -3.9946 37 1 3.6555 0.1065 -5.3683 38 1 3.4911 1.2894 -4.0294 39 1 5.2907 0.2896 -2.7752 40 1 5.8827 0.0550 -4.4541 41 1 5.5980 -2.1009 -2.8458 42 1 5.0605 -2.2038 -4.5493 43 1 5.5530 -3.4200 -3.3011 44 1 7.0822 -5.1671 -2.4895 45 1 6.3564 -6.7221 -0.7268 46 1 4.1021 -6.5348 0.2401 47 1 2.5606 -4.7891 -0.5509 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330822284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:32 Heat of formation + Delta-G solvation = -7.811706 kcal Electronic energy + Delta-G solvation = -30091.903089 eV Core-core repulsion = 26240.992576 eV Total energy + Delta-G solvation = -3850.910513 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.24332 -39.21418 -37.85327 -37.31345 -34.63810 -32.76819 -32.28922 -31.43430 -31.07294 -30.35683 -28.64760 -26.26023 -25.15435 -24.57300 -22.86184 -22.72959 -22.06611 -20.71995 -19.91247 -18.91981 -17.81454 -17.10485 -16.56822 -16.05269 -15.67344 -15.19428 -14.92886 -14.60966 -14.45975 -14.31372 -14.09258 -13.83215 -13.73911 -13.30182 -13.10892 -12.96438 -12.87950 -12.63478 -12.26158 -12.11120 -11.90334 -11.72090 -11.50254 -11.38203 -11.15303 -10.95769 -10.89593 -10.84307 -10.66536 -10.56796 -10.21922 -10.12336 -9.80902 -9.33577 -9.07899 -9.06264 -8.91555 -8.50660 -8.39478 -7.71236 -6.04093 -4.12198 0.78505 1.25512 2.69956 2.82632 3.27734 3.33747 3.36675 3.48019 3.75828 4.15007 4.27922 4.38443 4.46250 4.62543 4.77223 4.80002 4.87526 4.97830 5.06477 5.23736 5.25696 5.27503 5.36924 5.40194 5.56046 5.57383 5.64398 5.69196 5.84572 5.85860 5.91160 5.98876 6.13416 6.18574 6.20051 6.32582 6.34571 6.38834 6.77028 6.97629 7.14109 7.29564 7.39215 7.59452 7.70589 7.82589 8.03701 8.07391 8.26138 8.84573 8.87372 9.26559 9.54755 11.02012 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.008924 B = 0.006007 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3136.857440 B = 4660.330840 C = 6804.348999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.263 3.737 3 H 0.044 0.956 4 C -0.527 4.527 5 H 0.056 0.944 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.695 5.695 13 C 0.502 3.498 14 O -0.560 6.560 15 C 0.145 3.855 16 C -0.148 4.148 17 C -0.114 4.114 18 C -0.137 4.137 19 C 0.081 3.919 20 N -0.605 5.605 21 C 0.569 3.431 22 O -0.513 6.513 23 C -0.127 4.127 24 C -0.117 4.117 25 C -0.132 4.132 26 C -0.097 4.097 27 C -0.127 4.127 28 C -0.055 4.055 29 H 0.014 0.986 30 H 0.026 0.974 31 H 0.088 0.912 32 H 0.263 0.737 33 H 0.392 0.608 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.076 0.924 37 H 0.083 0.917 38 H 0.100 0.900 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.153 0.847 44 H 0.127 0.873 45 H 0.124 0.876 46 H 0.129 0.871 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.529 -11.104 -13.967 21.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.161 3.839 3 H 0.062 0.938 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.350 5.350 13 C 0.284 3.716 14 O -0.440 6.440 15 C 0.057 3.943 16 C -0.207 4.207 17 C -0.153 4.153 18 C -0.175 4.175 19 C -0.042 4.042 20 N -0.340 5.340 21 C 0.360 3.640 22 O -0.390 6.390 23 C -0.130 4.130 24 C -0.135 4.135 25 C -0.150 4.150 26 C -0.116 4.116 27 C -0.145 4.145 28 C -0.074 4.074 29 H 0.033 0.967 30 H 0.045 0.955 31 H 0.106 0.894 32 H 0.073 0.927 33 H 0.234 0.766 34 H 0.092 0.908 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.101 0.899 38 H 0.119 0.881 39 H 0.101 0.899 40 H 0.107 0.893 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.170 0.830 44 H 0.144 0.856 45 H 0.142 0.858 46 H 0.147 0.853 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 11.503 -10.317 -13.650 20.618 hybrid contribution 0.423 -0.947 0.990 1.434 sum 11.926 -11.264 -12.660 20.722 Atomic orbital electron populations 1.22027 0.98464 0.99147 1.00615 1.18712 0.91253 0.93592 0.80328 0.93829 1.21180 1.32061 1.12873 0.90405 0.92565 1.24864 0.94891 0.95002 0.98874 1.69909 1.36041 1.22548 1.23673 0.86499 0.78583 0.79968 0.82388 1.20602 1.20998 1.19831 1.47128 1.63167 1.14773 1.09915 1.20352 0.79788 0.86904 0.84526 1.90637 1.52102 1.17253 1.83959 1.21370 0.93206 0.85130 0.94584 1.22038 0.97831 1.02710 0.98098 1.22669 0.92715 1.00353 0.99515 1.22877 0.97591 0.94165 1.02871 1.23012 0.83510 0.97599 1.00032 1.48506 1.10863 1.19201 1.55417 1.18106 0.88002 0.80698 0.77196 1.90816 1.15420 1.76364 1.56432 1.19811 0.94851 0.97965 1.00406 1.22381 0.92626 0.98173 1.00275 1.21107 0.99863 0.95824 0.98164 1.21382 0.96076 0.98393 0.95717 1.21176 0.94034 0.98818 1.00479 1.21381 1.00277 0.92072 0.93635 0.96696 0.95460 0.89358 0.92687 0.76594 0.90797 0.91869 0.90517 0.89872 0.88140 0.89937 0.89333 0.88422 0.90436 0.82956 0.85552 0.85769 0.85264 0.84327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.99 9.26 37.16 0.34 -3.64 16 2 C 0.26 7.39 2.53 -69.08 -0.17 7.21 16 3 H 0.04 1.37 7.64 -51.93 -0.40 0.97 16 4 C -0.53 -15.10 8.73 -34.44 -0.30 -15.40 16 5 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 6 C 0.07 1.88 5.30 -17.82 -0.09 1.79 16 7 N -0.88 -26.01 11.32 55.43 0.63 -25.38 16 8 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 N -0.69 -16.93 4.62 -54.94 -0.25 -17.18 16 13 C 0.50 11.15 6.51 -10.99 -0.07 11.08 16 14 O -0.56 -14.08 15.74 5.55 0.09 -14.00 16 15 C 0.14 2.35 0.78 -131.99 -0.10 2.25 16 16 C -0.15 -2.23 8.39 37.16 0.31 -1.92 16 17 C -0.11 -1.43 5.97 -24.90 -0.15 -1.58 16 18 C -0.14 -1.39 7.08 -24.59 -0.17 -1.57 16 19 C 0.08 0.80 5.05 -2.53 -0.01 0.79 16 20 N -0.60 -8.82 2.74 -158.16 -0.43 -9.25 16 21 C 0.57 9.44 5.77 -12.33 -0.07 9.37 16 22 O -0.51 -10.30 12.95 5.32 0.07 -10.23 16 23 C -0.13 -1.79 5.84 -104.97 -0.61 -2.40 16 24 C -0.12 -1.23 8.17 -39.18 -0.32 -1.55 16 25 C -0.13 -1.19 10.03 -39.64 -0.40 -1.59 16 26 C -0.10 -0.92 10.04 -39.49 -0.40 -1.31 16 27 C -0.13 -1.42 10.03 -39.64 -0.40 -1.82 16 28 C -0.05 -0.77 9.59 -39.19 -0.38 -1.14 16 29 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.09 2.57 6.07 -51.93 -0.32 2.26 16 32 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 33 H 0.39 9.15 3.66 -40.83 -0.15 9.00 16 34 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 1.34 6.70 -51.93 -0.35 0.99 16 37 H 0.08 0.80 7.86 -51.93 -0.41 0.39 16 38 H 0.10 1.46 7.09 -51.93 -0.37 1.09 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.10 0.89 5.31 -51.93 -0.28 0.62 16 42 H 0.08 0.56 7.71 -51.93 -0.40 0.16 16 43 H 0.15 1.24 3.66 -52.49 -0.19 1.05 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 46 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 47 H 0.14 2.09 7.75 -52.49 -0.41 1.69 16 LS Contribution 369.82 15.07 5.57 5.57 Total: -1.00 -35.11 369.82 -8.95 -44.07 By element: Atomic # 1 Polarization: 17.92 SS G_CDS: -6.61 Total: 11.31 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -3.00 Total: -1.45 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: -0.06 Total: -51.82 kcal Atomic # 8 Polarization: -24.38 SS G_CDS: 0.16 Total: -24.23 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.11 -8.95 -44.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330822284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.254 kcal (2) G-P(sol) polarization free energy of solvation -35.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds