Wall clock time and date at job start Tue Mar 31 2020 15:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47299 * 2 1 4 4 C 1.50695 * 109.47030 * 119.99952 * 2 1 3 5 5 H 1.08006 * 120.00056 * 119.99947 * 4 2 1 6 6 C 1.37878 * 120.00066 * 299.99950 * 4 2 1 7 7 N 1.31515 * 120.00222 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99958 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47490 * 89.99739 * 8 6 4 10 10 H 1.48502 * 109.46881 * 209.99853 * 8 6 4 11 11 H 1.48510 * 109.47020 * 329.99608 * 8 6 4 12 12 N 1.46497 * 109.46881 * 240.00013 * 2 1 3 13 13 C 1.34773 * 120.00354 * 85.00115 * 12 2 1 14 14 O 1.21283 * 119.99954 * 355.91474 * 13 12 2 15 15 C 1.50699 * 120.00109 * 175.91641 * 13 12 2 16 16 C 1.53000 * 109.87554 * 100.92944 * 15 13 12 17 17 C 1.54331 * 109.88094 * 222.10245 * 15 13 12 18 18 C 1.55149 * 102.94331 * 97.22572 * 17 15 13 19 19 C 1.54910 * 101.58389 * 35.50113 * 18 17 15 20 20 N 1.47019 * 109.88579 * 339.90825 * 15 13 12 21 21 C 1.34777 * 125.64774 * 59.48657 * 20 15 13 22 22 O 1.21553 * 119.99988 * 6.20997 * 21 20 15 23 23 C 1.47840 * 120.00181 * 186.20892 * 21 20 15 24 24 C 1.39579 * 120.14478 * 342.15544 * 23 21 20 25 25 C 1.37955 * 119.85406 * 179.79196 * 24 23 21 26 26 C 1.38357 * 120.14315 * 0.49147 * 25 24 23 27 27 C 1.38359 * 120.29355 * 359.74011 * 26 25 24 28 28 C 1.37953 * 120.14497 * 0.02562 * 27 26 25 29 29 H 1.09001 * 109.47144 * 59.99847 * 1 2 3 30 30 H 1.08998 * 109.47299 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46784 * 300.00200 * 1 2 3 32 32 H 0.96994 * 120.00318 * 180.02562 * 7 6 4 33 33 H 0.97005 * 119.99708 * 265.00032 * 12 2 1 34 34 H 1.08998 * 109.47442 * 60.69429 * 16 15 13 35 35 H 1.09002 * 109.46888 * 180.69949 * 16 15 13 36 36 H 1.08998 * 109.46976 * 300.69503 * 16 15 13 37 37 H 1.09000 * 110.71919 * 215.59069 * 17 15 13 38 38 H 1.09001 * 110.71945 * 338.85516 * 17 15 13 39 39 H 1.09000 * 111.00441 * 277.42505 * 18 17 15 40 40 H 1.08999 * 111.00367 * 153.57874 * 18 17 15 41 41 H 1.09000 * 110.36564 * 204.15450 * 19 18 17 42 42 H 1.08992 * 110.46185 * 81.87702 * 19 18 17 43 43 H 1.07999 * 120.07037 * 0.02562 * 24 23 21 44 44 H 1.07994 * 119.92952 * 180.23130 * 25 24 23 45 45 H 1.08007 * 119.85303 * 179.76800 * 26 25 24 46 46 H 1.08005 * 119.92804 * 179.97438 * 27 26 25 47 47 H 1.08002 * 120.07210 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5441 4.4119 10 1 1.3444 -0.9489 5.1123 11 1 2.4880 -2.5654 3.7122 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0183 -2.3571 14 8 1.7893 1.1382 -2.4311 15 6 2.7355 -0.7036 -3.5634 16 6 1.6169 -1.1354 -4.5137 17 6 3.7052 0.2527 -4.2893 18 6 5.0917 -0.1758 -3.7405 19 6 4.9077 -1.7067 -3.5915 20 7 3.5141 -1.8772 -3.1416 21 6 3.0337 -2.9336 -2.4564 22 8 1.8421 -3.0224 -2.2332 23 6 3.9559 -3.9846 -1.9760 24 6 5.2343 -4.0994 -2.5244 25 6 6.0915 -5.0796 -2.0687 26 6 5.6828 -5.9541 -1.0775 27 6 4.4152 -5.8487 -0.5331 28 6 3.5499 -4.8700 -0.9764 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.7096 1.1619 3.4844 33 1 2.2490 -1.6318 -1.1526 34 1 1.0632 -0.2573 -4.8460 35 1 2.0488 -1.6410 -5.3774 36 1 0.9416 -1.8156 -3.9946 37 1 3.6555 0.1065 -5.3683 38 1 3.4911 1.2894 -4.0294 39 1 5.2907 0.2896 -2.7752 40 1 5.8827 0.0550 -4.4541 41 1 5.5980 -2.1009 -2.8458 42 1 5.0605 -2.2038 -4.5493 43 1 5.5530 -3.4200 -3.3011 44 1 7.0822 -5.1671 -2.4895 45 1 6.3564 -6.7221 -0.7268 46 1 4.1021 -6.5348 0.2401 47 1 2.5606 -4.7891 -0.5509 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330822284.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:31 Heat of formation + Delta-G solvation = -31.298286 kcal Electronic energy + Delta-G solvation = -30092.921543 eV Core-core repulsion = 26240.992576 eV Total energy + Delta-G solvation = -3851.928967 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.48874 -40.44584 -39.14507 -38.63394 -36.71576 -34.34955 -33.86345 -32.60025 -31.91501 -31.31451 -30.74756 -27.45568 -27.28848 -25.72299 -24.26683 -23.68047 -23.13722 -22.04263 -21.50536 -20.63209 -19.13739 -18.22295 -18.01034 -17.44786 -17.30034 -16.65635 -16.34232 -16.00566 -15.75994 -15.68470 -15.36941 -15.10521 -14.80071 -14.74804 -14.47586 -14.09462 -14.06663 -13.87642 -13.76369 -13.50673 -13.34888 -13.17293 -13.01166 -12.91625 -12.82536 -12.63088 -12.37581 -12.25335 -12.21007 -12.03461 -11.84307 -11.53125 -11.23114 -11.05108 -10.83872 -10.67219 -10.03498 -9.89820 -9.78346 -9.70771 -8.25245 -6.43892 -0.13113 0.43653 1.34819 1.37486 1.48307 1.49411 1.73747 1.81798 2.29655 2.59276 2.88249 3.03173 3.26032 3.49557 3.62115 3.83100 3.95575 4.01771 4.05448 4.13893 4.24528 4.36488 4.48572 4.50833 4.52499 4.56783 4.59984 4.71122 4.78372 4.80180 4.82615 4.95468 4.97943 5.06561 5.07591 5.09193 5.18432 5.26420 5.30203 5.38214 5.44942 5.51084 5.53045 5.59648 5.81987 5.98650 6.00177 6.29686 6.60939 6.87787 6.91482 7.22837 7.45262 8.81588 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.008924 B = 0.006007 C = 0.004114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3136.857440 B = 4660.330840 C = 6804.348999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.269 3.731 3 H -0.001 1.001 4 C -0.548 4.548 5 H 0.055 0.945 6 C 0.017 3.983 7 N -0.914 5.914 8 Si 0.972 3.028 9 H -0.269 1.269 10 H -0.276 1.276 11 H -0.265 1.265 12 N -0.701 5.701 13 C 0.489 3.511 14 O -0.598 6.598 15 C 0.147 3.853 16 C -0.143 4.143 17 C -0.110 4.110 18 C -0.130 4.130 19 C 0.072 3.928 20 N -0.604 5.604 21 C 0.558 3.442 22 O -0.566 6.566 23 C -0.154 4.154 24 C -0.111 4.111 25 C -0.123 4.123 26 C -0.090 4.090 27 C -0.135 4.135 28 C -0.088 4.088 29 H 0.009 0.991 30 H 0.025 0.975 31 H 0.072 0.928 32 H 0.268 0.732 33 H 0.398 0.602 34 H 0.071 0.929 35 H 0.104 0.896 36 H 0.043 0.957 37 H 0.126 0.874 38 H 0.073 0.927 39 H 0.052 0.948 40 H 0.137 0.863 41 H 0.110 0.890 42 H 0.125 0.875 43 H 0.182 0.818 44 H 0.169 0.831 45 H 0.159 0.841 46 H 0.142 0.858 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.842 -13.353 -15.536 26.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.165 3.835 3 H 0.017 0.983 4 C -0.586 4.586 5 H 0.073 0.927 6 C -0.183 4.183 7 N -0.552 5.552 8 Si 0.796 3.204 9 H -0.194 1.194 10 H -0.201 1.201 11 H -0.189 1.189 12 N -0.358 5.358 13 C 0.275 3.725 14 O -0.481 6.481 15 C 0.059 3.941 16 C -0.201 4.201 17 C -0.148 4.148 18 C -0.167 4.167 19 C -0.048 4.048 20 N -0.338 5.338 21 C 0.351 3.649 22 O -0.447 6.447 23 C -0.157 4.157 24 C -0.128 4.128 25 C -0.141 4.141 26 C -0.108 4.108 27 C -0.153 4.153 28 C -0.108 4.108 29 H 0.028 0.972 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.242 0.758 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.062 0.938 37 H 0.144 0.856 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.155 0.845 41 H 0.128 0.872 42 H 0.143 0.857 43 H 0.198 0.802 44 H 0.186 0.814 45 H 0.177 0.823 46 H 0.160 0.840 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 15.866 -12.577 -15.261 25.354 hybrid contribution -0.914 -0.223 1.461 1.738 sum 14.952 -12.800 -13.800 24.038 Atomic orbital electron populations 1.21845 0.98759 0.98529 0.99510 1.18346 0.91012 0.91739 0.82395 0.98296 1.21357 1.32917 1.13173 0.91183 0.92664 1.25822 0.94673 0.95602 1.02188 1.70039 1.36595 1.23736 1.24823 0.85347 0.78375 0.78931 0.77778 1.19384 1.20056 1.18945 1.47105 1.63760 1.15085 1.09857 1.21632 0.78696 0.86636 0.85554 1.90594 1.53524 1.19127 1.84828 1.21404 0.94735 0.86374 0.91607 1.22018 0.97136 1.02186 0.98731 1.22744 0.92939 0.97647 1.01516 1.22925 0.97354 0.93889 1.02553 1.23484 0.80805 0.97962 1.02508 1.48637 1.12692 1.17743 1.54701 1.18708 0.87861 0.81557 0.76733 1.90770 1.17781 1.77714 1.58404 1.19779 0.96253 0.97919 1.01734 1.22707 0.90916 0.98871 1.00306 1.21630 1.01105 0.94218 0.97108 1.21844 0.95297 0.98787 0.94881 1.21392 0.94704 0.98213 1.00967 1.21340 0.99937 0.94241 0.95239 0.97168 0.95602 0.90893 0.92231 0.75848 0.91020 0.87722 0.93767 0.85587 0.90820 0.92873 0.84518 0.87193 0.85707 0.80162 0.81352 0.82323 0.83991 0.87597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -7.59 9.26 71.98 0.67 -6.92 16 2 C 0.27 16.18 2.53 44.25 0.11 16.29 16 3 H 0.00 -0.06 7.64 -2.39 -0.02 -0.07 16 4 C -0.55 -32.99 8.73 25.60 0.22 -32.76 16 5 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 6 C 0.02 1.01 5.30 84.65 0.45 1.46 16 7 N -0.91 -55.73 11.32 21.45 0.24 -55.49 16 8 Si 0.97 44.91 29.54 68.60 2.03 46.94 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 12 N -0.70 -36.63 4.62 -446.11 -2.06 -38.69 16 13 C 0.49 23.05 6.51 87.66 0.57 23.62 16 14 O -0.60 -32.23 15.74 -3.04 -0.05 -32.28 16 15 C 0.15 4.77 0.78 3.21 0.00 4.77 16 16 C -0.14 -4.25 8.39 71.98 0.60 -3.65 16 17 C -0.11 -2.54 5.97 31.78 0.19 -2.35 16 18 C -0.13 -2.19 7.08 31.98 0.23 -1.97 16 19 C 0.07 1.15 5.05 86.86 0.44 1.59 16 20 N -0.60 -17.07 2.74 -772.58 -2.12 -19.19 16 21 C 0.56 19.03 5.77 86.78 0.50 19.53 16 22 O -0.57 -24.45 12.95 -3.88 -0.05 -24.50 16 23 C -0.15 -4.29 5.84 -20.09 -0.12 -4.40 16 24 C -0.11 -1.95 8.17 22.53 0.18 -1.77 16 25 C -0.12 -1.62 10.03 22.23 0.22 -1.40 16 26 C -0.09 -1.35 10.04 22.33 0.22 -1.12 16 27 C -0.13 -2.87 10.03 22.23 0.22 -2.65 16 28 C -0.09 -2.58 9.59 22.53 0.22 -2.37 16 29 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.02 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 4.52 6.07 -2.39 -0.01 4.51 16 32 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 33 H 0.40 19.90 3.66 -92.91 -0.34 19.56 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.04 1.61 6.70 -2.39 -0.02 1.59 16 37 H 0.13 1.85 7.86 -2.39 -0.02 1.83 16 38 H 0.07 2.14 7.09 -2.39 -0.02 2.12 16 39 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.11 1.53 5.31 -2.39 -0.01 1.52 16 42 H 0.13 0.94 7.71 -2.39 -0.02 0.92 16 43 H 0.18 1.99 3.66 -2.91 -0.01 1.98 16 44 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 45 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 46 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 47 H 0.11 3.63 7.75 -2.91 -0.02 3.61 16 Total: -1.00 -86.34 369.82 3.58 -82.75 By element: Atomic # 1 Polarization: 33.89 SS G_CDS: 0.65 Total: 34.54 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: 4.94 Total: 5.91 kcal Atomic # 7 Polarization: -109.43 SS G_CDS: -3.93 Total: -113.36 kcal Atomic # 8 Polarization: -56.68 SS G_CDS: -0.10 Total: -56.78 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -86.34 3.58 -82.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330822284.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.455 kcal (2) G-P(sol) polarization free energy of solvation -86.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds