Wall clock time and date at job start Tue Mar 31 2020 15:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47140 * 2 1 4 4 C 1.50697 * 109.47064 * 119.99694 * 2 1 3 5 5 H 1.08001 * 120.00040 * 120.00119 * 4 2 1 6 6 C 1.37880 * 120.00039 * 300.00327 * 4 2 1 7 7 N 1.31511 * 120.00286 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47094 * 89.99774 * 8 6 4 10 10 H 1.48492 * 109.47270 * 209.99811 * 8 6 4 11 11 H 1.48505 * 109.46921 * 329.99811 * 8 6 4 12 12 N 1.46497 * 109.47282 * 239.99628 * 2 1 3 13 13 C 1.46500 * 120.00137 * 300.00462 * 12 2 1 14 14 C 1.34775 * 120.00193 * 119.99490 * 12 2 1 15 15 O 1.21589 * 119.99612 * 0.02562 * 14 12 2 16 16 N 1.34768 * 120.00169 * 179.97438 * 14 12 2 17 17 C 1.39991 * 119.99842 * 174.71118 * 16 14 12 18 18 C 1.39023 * 119.91539 * 146.79017 * 17 16 14 19 19 C 1.38407 * 120.32740 * 179.36871 * 18 17 16 20 20 C 1.37736 * 119.86160 * 0.51281 * 19 18 17 21 21 C 1.39421 * 120.36118 * 0.44690 * 20 19 18 22 22 C 1.38622 * 119.91423 * 326.51388 * 17 16 14 23 23 C 1.47306 * 119.65840 * 177.72397 * 21 20 19 24 24 O 1.21256 * 121.23751 * 114.05952 * 23 21 20 25 25 C 1.51650 * 117.52395 * 294.07690 * 23 21 20 26 26 C 1.50796 * 110.07273 * 81.27501 * 25 23 21 27 27 C 1.52119 * 114.14786 * 295.54568 * 26 25 23 28 28 C 1.51908 * 120.07381 * 181.72835 * 20 19 18 29 29 H 1.08997 * 109.47038 * 299.99899 * 1 2 3 30 30 H 1.08998 * 109.47105 * 60.00061 * 1 2 3 31 31 H 1.09002 * 109.46918 * 180.02562 * 1 2 3 32 32 H 0.96995 * 120.00287 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.47693 * 89.99715 * 13 12 2 34 34 H 1.09006 * 109.47171 * 210.00192 * 13 12 2 35 35 H 1.09000 * 109.46926 * 329.99230 * 13 12 2 36 36 H 0.97001 * 120.00833 * 354.71363 * 16 14 12 37 37 H 1.07999 * 119.84216 * 359.34348 * 18 17 16 38 38 H 1.08002 * 120.06974 * 180.53317 * 19 18 17 39 39 H 1.07999 * 120.29436 * 359.78924 * 22 17 16 40 40 H 1.08998 * 109.37215 * 321.09059 * 25 23 21 41 41 H 1.09007 * 109.37146 * 201.45693 * 25 23 21 42 42 H 1.09002 * 108.54770 * 174.33888 * 26 25 23 43 43 H 1.08994 * 108.55034 * 56.75255 * 26 25 23 44 44 H 1.09004 * 109.07823 * 311.06611 * 27 26 25 45 45 H 1.08999 * 109.07601 * 192.10465 * 27 26 25 46 46 H 1.08998 * 109.50164 * 7.65906 * 28 20 19 47 47 H 1.08997 * 109.50261 * 127.73599 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.6305 -0.5438 4.4119 10 1 1.3445 -0.9488 5.1123 11 1 2.4880 -2.5652 3.7123 12 7 2.0184 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0872 1.1283 -1.8908 16 7 3.2429 -0.6713 -3.1834 17 6 3.9539 0.0370 -4.1594 18 6 4.9642 -0.5944 -4.8760 19 6 5.6638 0.0940 -5.8519 20 6 5.3653 1.4141 -6.1074 21 6 4.3680 2.0643 -5.3819 22 6 3.6451 1.3644 -4.4127 23 6 4.0957 3.4900 -5.6331 24 8 3.0407 3.8549 -6.1065 25 6 5.1842 4.4845 -5.2779 26 6 6.2151 4.5379 -6.3771 27 6 6.9811 3.2388 -6.5756 28 6 6.1031 2.1629 -7.2041 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.7088 1.1615 3.4843 33 1 0.7376 -2.1445 -1.9992 34 1 2.4630 -2.5820 -1.9862 35 1 1.5296 -2.5969 -0.4707 36 1 3.0738 -1.6194 -3.2991 37 1 5.2045 -1.6269 -4.6700 38 1 6.4420 -0.4031 -6.4121 39 1 2.8554 1.8546 -3.8627 40 1 5.6632 4.1793 -4.3476 41 1 4.7427 5.4726 -5.1480 42 1 6.9283 5.3290 -6.1454 43 1 5.7134 4.7907 -7.3111 44 1 7.3401 2.8856 -5.6088 45 1 7.8362 3.4251 -7.2253 46 1 6.7262 1.4661 -7.7647 47 1 5.3817 2.6277 -7.8761 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335143653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:16 Heat of formation + Delta-G solvation = -40.371406 kcal Electronic energy + Delta-G solvation = -28407.732486 eV Core-core repulsion = 24555.410079 eV Total energy + Delta-G solvation = -3852.322407 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.75887 -39.77884 -38.15105 -36.43823 -35.40695 -34.29632 -32.84631 -31.73557 -30.95682 -29.58019 -28.48466 -26.25009 -25.26660 -25.00753 -24.07069 -22.70985 -21.39825 -20.52682 -19.60970 -19.23995 -17.79728 -17.15325 -16.42594 -16.13075 -15.87959 -15.55492 -15.19954 -15.01400 -14.72988 -14.31135 -14.19432 -13.85973 -13.73053 -13.61584 -13.36940 -13.20029 -12.83130 -12.57380 -12.56189 -12.35108 -11.83398 -11.66989 -11.56108 -11.52985 -11.19094 -11.06917 -10.96835 -10.92040 -10.89804 -10.71725 -10.28956 -10.19583 -10.02648 -9.67473 -9.43295 -9.20009 -8.86263 -8.45633 -7.99107 -7.57452 -6.09978 -4.18233 1.02394 1.39956 1.96405 3.09500 3.25347 3.32141 3.33541 3.49552 3.93242 3.94383 4.32712 4.41815 4.48202 4.53895 4.67311 4.83005 4.89488 5.06478 5.08442 5.21382 5.28415 5.34497 5.39690 5.50755 5.57594 5.61016 5.69436 5.72226 5.78120 5.83858 5.91810 5.94451 6.03393 6.19336 6.24551 6.34515 6.47392 6.58877 6.68882 6.78738 6.98649 7.10722 7.12834 7.38728 7.42030 7.64716 7.77595 8.03103 8.17645 8.56632 8.82079 9.13537 9.48587 10.95388 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017851 B = 0.002843 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.202496 B = 9847.279872 C =10268.001459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.272 3.728 3 H 0.065 0.935 4 C -0.528 4.528 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.602 5.602 13 C 0.084 3.916 14 C 0.695 3.305 15 O -0.578 6.578 16 N -0.696 5.696 17 C 0.180 3.820 18 C -0.139 4.139 19 C -0.097 4.097 20 C -0.082 4.082 21 C -0.134 4.134 22 C -0.081 4.081 23 C 0.416 3.584 24 O -0.446 6.446 25 C -0.162 4.162 26 C -0.110 4.110 27 C -0.120 4.120 28 C -0.083 4.083 29 H 0.095 0.905 30 H 0.011 0.989 31 H 0.029 0.971 32 H 0.264 0.736 33 H 0.045 0.955 34 H 0.046 0.954 35 H 0.086 0.914 36 H 0.404 0.596 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.143 0.857 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.078 0.922 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.472 -1.244 -18.872 21.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.172 3.828 3 H 0.083 0.917 4 C -0.567 4.567 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.336 5.336 13 C -0.061 4.061 14 C 0.397 3.603 15 O -0.456 6.456 16 N -0.345 5.345 17 C 0.084 3.916 18 C -0.160 4.160 19 C -0.116 4.116 20 C -0.083 4.083 21 C -0.136 4.136 22 C -0.102 4.102 23 C 0.290 3.710 24 O -0.318 6.318 25 C -0.200 4.200 26 C -0.147 4.147 27 C -0.158 4.158 28 C -0.120 4.120 29 H 0.113 0.887 30 H 0.031 0.969 31 H 0.049 0.951 32 H 0.074 0.926 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.241 0.759 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.161 0.839 40 H 0.115 0.885 41 H 0.111 0.889 42 H 0.093 0.907 43 H 0.082 0.918 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 9.922 -0.097 -18.703 21.172 hybrid contribution 0.218 -1.229 1.070 1.645 sum 10.140 -1.326 -17.632 20.383 Atomic orbital electron populations 1.22103 0.98094 0.99444 1.00901 1.18914 0.90722 0.94328 0.78837 0.91704 1.21319 1.31933 1.13130 0.90296 0.92256 1.24886 0.94899 0.94989 0.98950 1.69876 1.36205 1.22542 1.23833 0.86483 0.78674 0.79798 0.82346 1.20590 1.21095 1.19952 1.47633 1.50422 1.11614 1.23930 1.21562 0.98355 0.83428 1.02711 1.15998 0.79651 0.85126 0.79486 1.90886 1.62354 1.15493 1.76846 1.43033 1.58441 1.12802 1.20252 1.17427 0.92281 0.92051 0.89880 1.21009 0.95349 1.00866 0.98799 1.20635 0.99701 0.93299 0.97956 1.19820 0.96113 0.94403 0.97983 1.20067 0.98539 0.95454 0.99519 1.21244 0.99286 0.93566 0.96110 1.22745 0.86682 0.89247 0.72282 1.90549 1.26154 1.82627 1.32492 1.21880 0.96912 0.99964 1.01270 1.20835 0.97267 0.98472 0.98156 1.21324 0.98085 0.94284 1.02064 1.20807 0.98260 0.97485 0.95448 0.88702 0.96941 0.95140 0.92617 0.93690 0.93562 0.89550 0.75904 0.85535 0.85304 0.83931 0.88538 0.88911 0.90714 0.91794 0.90952 0.91058 0.90381 0.91005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.51 8.97 37.16 0.33 -3.17 16 2 C 0.27 6.91 2.64 -69.08 -0.18 6.73 16 3 H 0.07 1.92 6.90 -51.93 -0.36 1.56 16 4 C -0.53 -14.09 7.99 -34.44 -0.28 -14.37 16 5 H 0.06 1.55 7.33 -52.49 -0.38 1.17 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.93 11.32 55.43 0.63 -24.31 16 8 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.60 -12.72 2.75 -181.01 -0.50 -13.21 16 13 C 0.08 1.35 9.24 59.85 0.55 1.90 16 14 C 0.70 14.60 8.01 -86.93 -0.70 13.91 16 15 O -0.58 -14.35 13.37 5.29 0.07 -14.28 16 16 N -0.70 -11.14 5.22 -14.24 -0.07 -11.21 16 17 C 0.18 2.76 6.27 -83.70 -0.53 2.24 16 18 C -0.14 -1.65 9.95 -39.23 -0.39 -2.04 16 19 C -0.10 -1.02 9.67 -39.70 -0.38 -1.40 16 20 C -0.08 -0.94 5.10 -103.77 -0.53 -1.47 16 21 C -0.13 -1.93 5.47 -105.22 -0.58 -2.51 16 22 C -0.08 -1.37 8.42 -38.89 -0.33 -1.70 16 23 C 0.42 5.92 5.52 -30.15 -0.17 5.76 16 24 O -0.45 -7.68 17.93 5.58 0.10 -7.58 16 25 C -0.16 -1.73 5.79 -28.52 -0.17 -1.89 16 26 C -0.11 -0.88 5.29 -28.29 -0.15 -1.03 16 27 C -0.12 -0.90 5.58 -27.47 -0.15 -1.05 16 28 C -0.08 -0.70 5.42 -27.58 -0.15 -0.85 16 29 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 30 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.03 0.66 7.67 -51.93 -0.40 0.27 16 32 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 33 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.58 6.29 -51.93 -0.33 0.25 16 35 H 0.09 1.48 7.02 -51.93 -0.36 1.12 16 36 H 0.40 5.08 6.51 -40.82 -0.27 4.82 16 37 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.13 0.95 7.98 -52.49 -0.42 0.53 16 39 H 0.14 2.84 6.44 -52.49 -0.34 2.50 16 40 H 0.10 1.01 8.13 -51.93 -0.42 0.59 16 41 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.51 7.92 -51.93 -0.41 0.10 16 44 H 0.07 0.59 7.84 -51.93 -0.41 0.19 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.08 0.50 7.93 -51.93 -0.41 0.09 16 47 H 0.07 0.64 7.58 -51.93 -0.39 0.25 16 LS Contribution 374.78 15.07 5.65 5.65 Total: -1.00 -32.90 374.78 -9.91 -42.81 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.89 Total: 5.59 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -3.88 Total: 0.72 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: 0.05 Total: -48.73 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: 0.17 Total: -21.86 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.90 -9.91 -42.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335143653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.443 kcal (2) G-P(sol) polarization free energy of solvation -32.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds