Wall clock time and date at job start Tue Mar 31 2020 15:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47140 * 2 1 4 4 C 1.50697 * 109.47064 * 119.99694 * 2 1 3 5 5 H 1.08001 * 120.00040 * 120.00119 * 4 2 1 6 6 C 1.37880 * 120.00039 * 300.00327 * 4 2 1 7 7 N 1.31511 * 120.00286 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00009 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47094 * 89.99774 * 8 6 4 10 10 H 1.48492 * 109.47270 * 209.99811 * 8 6 4 11 11 H 1.48505 * 109.46921 * 329.99811 * 8 6 4 12 12 N 1.46497 * 109.47282 * 239.99628 * 2 1 3 13 13 C 1.46500 * 120.00137 * 300.00462 * 12 2 1 14 14 C 1.34775 * 120.00193 * 119.99490 * 12 2 1 15 15 O 1.21589 * 119.99612 * 0.02562 * 14 12 2 16 16 N 1.34768 * 120.00169 * 179.97438 * 14 12 2 17 17 C 1.39991 * 119.99842 * 174.71118 * 16 14 12 18 18 C 1.39023 * 119.91539 * 146.79017 * 17 16 14 19 19 C 1.38407 * 120.32740 * 179.36871 * 18 17 16 20 20 C 1.37736 * 119.86160 * 0.51281 * 19 18 17 21 21 C 1.39421 * 120.36118 * 0.44690 * 20 19 18 22 22 C 1.38622 * 119.91423 * 326.51388 * 17 16 14 23 23 C 1.47306 * 119.65840 * 177.72397 * 21 20 19 24 24 O 1.21256 * 121.23751 * 114.05952 * 23 21 20 25 25 C 1.51650 * 117.52395 * 294.07690 * 23 21 20 26 26 C 1.50796 * 110.07273 * 81.27501 * 25 23 21 27 27 C 1.52119 * 114.14786 * 295.54568 * 26 25 23 28 28 C 1.51908 * 120.07381 * 181.72835 * 20 19 18 29 29 H 1.08997 * 109.47038 * 299.99899 * 1 2 3 30 30 H 1.08998 * 109.47105 * 60.00061 * 1 2 3 31 31 H 1.09002 * 109.46918 * 180.02562 * 1 2 3 32 32 H 0.96995 * 120.00287 * 179.97438 * 7 6 4 33 33 H 1.08996 * 109.47693 * 89.99715 * 13 12 2 34 34 H 1.09006 * 109.47171 * 210.00192 * 13 12 2 35 35 H 1.09000 * 109.46926 * 329.99230 * 13 12 2 36 36 H 0.97001 * 120.00833 * 354.71363 * 16 14 12 37 37 H 1.07999 * 119.84216 * 359.34348 * 18 17 16 38 38 H 1.08002 * 120.06974 * 180.53317 * 19 18 17 39 39 H 1.07999 * 120.29436 * 359.78924 * 22 17 16 40 40 H 1.08998 * 109.37215 * 321.09059 * 25 23 21 41 41 H 1.09007 * 109.37146 * 201.45693 * 25 23 21 42 42 H 1.09002 * 108.54770 * 174.33888 * 26 25 23 43 43 H 1.08994 * 108.55034 * 56.75255 * 26 25 23 44 44 H 1.09004 * 109.07823 * 311.06611 * 27 26 25 45 45 H 1.08999 * 109.07601 * 192.10465 * 27 26 25 46 46 H 1.08998 * 109.50164 * 7.65906 * 28 20 19 47 47 H 1.08997 * 109.50261 * 127.73599 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6533 -1.5884 1.1314 6 6 1.6992 -0.2392 2.4827 7 7 0.9435 0.8303 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.6305 -0.5438 4.4119 10 1 1.3445 -0.9488 5.1123 11 1 2.4880 -2.5652 3.7123 12 7 2.0184 -0.6907 -1.1961 13 6 1.6644 -2.0932 -1.4279 14 6 2.7932 -0.0357 -2.0833 15 8 3.0872 1.1283 -1.8908 16 7 3.2429 -0.6713 -3.1834 17 6 3.9539 0.0370 -4.1594 18 6 4.9642 -0.5944 -4.8760 19 6 5.6638 0.0940 -5.8519 20 6 5.3653 1.4141 -6.1074 21 6 4.3680 2.0643 -5.3819 22 6 3.6451 1.3644 -4.4127 23 6 4.0957 3.4900 -5.6331 24 8 3.0407 3.8549 -6.1065 25 6 5.1842 4.4845 -5.2779 26 6 6.2151 4.5379 -6.3771 27 6 6.9811 3.2388 -6.5756 28 6 6.1031 2.1629 -7.2041 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.7088 1.1615 3.4843 33 1 0.7376 -2.1445 -1.9992 34 1 2.4630 -2.5820 -1.9862 35 1 1.5296 -2.5969 -0.4707 36 1 3.0738 -1.6194 -3.2991 37 1 5.2045 -1.6269 -4.6700 38 1 6.4420 -0.4031 -6.4121 39 1 2.8554 1.8546 -3.8627 40 1 5.6632 4.1793 -4.3476 41 1 4.7427 5.4726 -5.1480 42 1 6.9283 5.3290 -6.1454 43 1 5.7134 4.7907 -7.3111 44 1 7.3401 2.8856 -5.6088 45 1 7.8362 3.4251 -7.2253 46 1 6.7262 1.4661 -7.7647 47 1 5.3817 2.6277 -7.8761 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335143653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:15 Heat of formation + Delta-G solvation = -60.069820 kcal Electronic energy + Delta-G solvation = -28408.586674 eV Core-core repulsion = 24555.410079 eV Total energy + Delta-G solvation = -3853.176594 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.96108 -41.12995 -39.36288 -37.61857 -36.89676 -35.64279 -34.66158 -32.77658 -32.03960 -31.17158 -29.65848 -27.69213 -27.32507 -25.99910 -25.05474 -23.94265 -22.82188 -21.32899 -20.82732 -20.76793 -19.18537 -18.62620 -18.15958 -17.32503 -17.14883 -16.76937 -16.52471 -16.44520 -15.99848 -15.87388 -15.18746 -15.03657 -14.79450 -14.73516 -14.51722 -14.41058 -14.13480 -14.06673 -13.63309 -13.56968 -13.33088 -13.14776 -12.92145 -12.77448 -12.69350 -12.62242 -12.54711 -12.21775 -12.10345 -11.94755 -11.63584 -11.60624 -11.29259 -11.18526 -11.03459 -10.76265 -10.54225 -9.91818 -9.50036 -8.93068 -8.15637 -6.32666 -0.02033 0.33348 0.85864 1.41448 1.42698 1.52618 1.68968 2.07754 2.41171 2.71998 2.89792 3.07953 3.12713 3.64593 3.79166 3.89508 3.96645 4.09616 4.18351 4.27098 4.28962 4.42138 4.50312 4.52561 4.63901 4.66728 4.73945 4.79980 4.85622 4.88373 4.94629 4.97490 5.02542 5.04294 5.13895 5.18633 5.21529 5.30574 5.42029 5.43477 5.49334 5.52870 5.55064 5.63726 5.92760 5.99234 6.12451 6.21393 6.27879 6.74808 7.02608 7.34459 7.57144 8.89047 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017851 B = 0.002843 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.202496 B = 9847.279872 C =10268.001459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.278 3.722 3 H 0.008 0.992 4 C -0.538 4.538 5 H 0.064 0.936 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.968 3.032 9 H -0.283 1.283 10 H -0.281 1.281 11 H -0.259 1.259 12 N -0.611 5.611 13 C 0.079 3.921 14 C 0.689 3.311 15 O -0.629 6.629 16 N -0.675 5.675 17 C 0.150 3.850 18 C -0.123 4.123 19 C -0.085 4.085 20 C -0.073 4.073 21 C -0.155 4.155 22 C -0.114 4.114 23 C 0.411 3.589 24 O -0.490 6.490 25 C -0.160 4.160 26 C -0.109 4.109 27 C -0.118 4.118 28 C -0.083 4.083 29 H 0.069 0.931 30 H 0.014 0.986 31 H 0.049 0.951 32 H 0.265 0.735 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.077 0.923 36 H 0.421 0.579 37 H 0.162 0.838 38 H 0.178 0.822 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.102 0.898 46 H 0.112 0.888 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.670 -4.083 -20.897 25.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.176 3.824 3 H 0.026 0.974 4 C -0.577 4.577 5 H 0.082 0.918 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.792 3.208 9 H -0.209 1.209 10 H -0.206 1.206 11 H -0.183 1.183 12 N -0.344 5.344 13 C -0.064 4.064 14 C 0.391 3.609 15 O -0.510 6.510 16 N -0.327 5.327 17 C 0.054 3.946 18 C -0.143 4.143 19 C -0.103 4.103 20 C -0.074 4.074 21 C -0.157 4.157 22 C -0.135 4.135 23 C 0.289 3.711 24 O -0.366 6.366 25 C -0.197 4.197 26 C -0.146 4.146 27 C -0.156 4.156 28 C -0.120 4.120 29 H 0.088 0.912 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.096 0.904 36 H 0.262 0.738 37 H 0.180 0.820 38 H 0.195 0.805 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.116 0.884 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.120 0.880 46 H 0.131 0.869 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.141 -3.003 -20.781 24.770 hybrid contribution -0.731 -0.302 1.588 1.774 sum 12.410 -3.305 -19.193 23.093 Atomic orbital electron populations 1.21891 0.97202 1.00222 0.99769 1.18464 0.91324 0.91938 0.80660 0.97440 1.21581 1.31960 1.13218 0.90943 0.91751 1.25767 0.95020 0.95645 1.02117 1.70029 1.37290 1.23952 1.24495 0.85415 0.77706 0.79269 0.78372 1.20867 1.20642 1.18294 1.47482 1.50571 1.13498 1.22887 1.21831 1.00876 0.80459 1.03187 1.16201 0.79566 0.84643 0.80494 1.90853 1.64048 1.17940 1.78163 1.42637 1.57899 1.13354 1.18772 1.17687 0.94201 0.91775 0.90899 1.21408 0.93217 1.02273 0.97409 1.21212 0.99619 0.92551 0.96955 1.20307 0.94447 0.95176 0.97440 1.20226 0.99763 0.95666 0.99999 1.20992 0.99734 0.95001 0.97816 1.23394 0.86708 0.90283 0.70684 1.90516 1.27909 1.83277 1.34888 1.21943 0.96571 0.98812 1.02417 1.20899 0.96836 1.00063 0.96797 1.21350 0.98543 0.93242 1.02420 1.20956 0.98401 0.98263 0.94387 0.91213 0.96644 0.93175 0.92614 0.91755 0.89503 0.90422 0.73793 0.82009 0.80509 0.88860 0.88656 0.88772 0.88370 0.91692 0.91469 0.87987 0.86945 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.57 8.97 71.98 0.65 -5.92 16 2 C 0.28 14.84 2.64 44.25 0.12 14.96 16 3 H 0.01 0.49 6.90 -2.39 -0.02 0.47 16 4 C -0.54 -29.37 7.99 25.60 0.20 -29.16 16 5 H 0.06 3.36 7.33 -2.91 -0.02 3.34 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -53.61 11.32 21.45 0.24 -53.36 16 8 Si 0.97 42.99 29.54 68.60 2.03 45.01 16 9 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 10 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 11 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 12 N -0.61 -26.48 2.75 -844.85 -2.33 -28.80 16 13 C 0.08 2.43 9.24 127.77 1.18 3.61 16 14 C 0.69 30.31 8.01 179.06 1.43 31.74 16 15 O -0.63 -33.97 13.37 -4.00 -0.05 -34.02 16 16 N -0.68 -21.60 5.22 -317.22 -1.66 -23.25 16 17 C 0.15 4.59 6.27 38.12 0.24 4.83 16 18 C -0.12 -2.50 9.95 22.50 0.22 -2.28 16 19 C -0.09 -1.41 9.67 22.19 0.21 -1.19 16 20 C -0.07 -1.50 5.10 -19.31 -0.10 -1.59 16 21 C -0.16 -4.62 5.47 -20.25 -0.11 -4.73 16 22 C -0.11 -4.16 8.42 22.72 0.19 -3.97 16 23 C 0.41 12.51 5.52 28.38 0.16 12.67 16 24 O -0.49 -18.39 17.93 -2.96 -0.05 -18.44 16 25 C -0.16 -3.49 5.79 29.44 0.17 -3.32 16 26 C -0.11 -1.53 5.29 29.59 0.16 -1.38 16 27 C -0.12 -1.35 5.58 30.11 0.17 -1.19 16 28 C -0.08 -1.11 5.42 30.05 0.16 -0.94 16 29 H 0.07 3.83 6.07 -2.39 -0.01 3.81 16 30 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 2.23 7.67 -2.39 -0.02 2.21 16 32 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 33 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.09 1.93 6.29 -2.38 -0.01 1.91 16 35 H 0.08 2.55 7.02 -2.39 -0.02 2.54 16 36 H 0.42 9.78 6.51 -92.71 -0.60 9.18 16 37 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.18 1.33 7.98 -2.91 -0.02 1.30 16 39 H 0.09 4.26 6.44 -2.91 -0.02 4.24 16 40 H 0.10 2.09 8.13 -2.39 -0.02 2.07 16 41 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 42 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 0.93 7.92 -2.39 -0.02 0.91 16 44 H 0.07 0.88 7.84 -2.39 -0.02 0.86 16 45 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.11 0.78 7.93 -2.39 -0.02 0.76 16 47 H 0.06 1.01 7.58 -2.39 -0.02 0.99 16 Total: -1.00 -80.55 374.78 4.08 -76.48 By element: Atomic # 1 Polarization: 22.66 SS G_CDS: 0.39 Total: 23.04 kcal Atomic # 6 Polarization: 7.84 SS G_CDS: 5.51 Total: 13.35 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -3.74 Total: -105.42 kcal Atomic # 8 Polarization: -52.35 SS G_CDS: -0.11 Total: -52.46 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.01 kcal Total: -80.55 4.08 -76.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335143653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.407 kcal (2) G-P(sol) polarization free energy of solvation -80.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds