Wall clock time and date at job start Tue Mar 31 2020 16:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47372 * 2 1 4 4 N 1.46505 * 109.46855 * 240.00374 * 2 1 3 5 5 C 1.34776 * 120.00283 * 84.99930 * 4 2 1 6 6 O 1.21284 * 119.99793 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00091 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.46953 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.46953 * 180.02562 * 8 7 5 10 10 C 1.38236 * 120.00141 * 269.72217 * 9 8 7 11 11 C 1.38229 * 120.00106 * 179.76593 * 10 9 8 12 12 C 1.38247 * 119.99897 * 0.50995 * 11 10 9 13 13 C 1.38233 * 119.99687 * 359.74587 * 12 11 10 14 14 C 1.38235 * 119.99801 * 90.00079 * 9 8 7 15 15 C 1.50700 * 109.47095 * 120.00396 * 2 1 3 16 16 O 1.21297 * 119.99972 * 119.99739 * 15 2 1 17 17 N 1.34768 * 119.99934 * 299.99987 * 15 2 1 18 18 C 1.37101 * 120.00013 * 180.02562 * 17 15 2 19 19 H 1.08002 * 119.99711 * 228.37423 * 18 17 15 20 20 C 1.38947 * 120.00200 * 48.37429 * 18 17 15 21 21 N 1.31411 * 120.00199 * 192.25913 * 20 18 17 22 22 Si 1.86805 * 120.00014 * 12.25738 * 20 18 17 23 23 H 1.48501 * 109.46878 * 265.55699 * 22 20 18 24 24 H 1.48505 * 109.47105 * 25.55354 * 22 20 18 25 25 H 1.48498 * 109.47301 * 145.55555 * 22 20 18 26 26 C 1.46500 * 120.00179 * 359.97438 * 17 15 2 27 27 C 1.53006 * 117.49949 * 187.19608 * 26 17 15 28 28 C 1.53003 * 117.49691 * 118.53665 * 26 17 15 29 29 H 1.09001 * 109.46796 * 59.99374 * 1 2 3 30 30 H 1.09000 * 109.47372 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46858 * 299.99972 * 1 2 3 32 32 H 0.96996 * 119.99815 * 264.99964 * 4 2 1 33 33 H 1.09005 * 109.46817 * 299.99893 * 7 5 4 34 34 H 1.09000 * 109.47107 * 60.00013 * 7 5 4 35 35 H 1.09004 * 109.47035 * 300.00175 * 8 7 5 36 36 H 1.09000 * 109.47558 * 59.99854 * 8 7 5 37 37 H 1.07995 * 119.99550 * 0.02562 * 10 9 8 38 38 H 1.08000 * 120.00356 * 180.23043 * 11 10 9 39 39 H 1.08000 * 119.99762 * 179.72262 * 12 11 10 40 40 H 1.08002 * 119.99593 * 179.97438 * 13 12 11 41 41 H 1.08001 * 120.00348 * 359.97438 * 14 9 8 42 42 H 0.97002 * 120.00227 * 180.02562 * 21 20 18 43 43 H 1.08999 * 115.54960 * 332.86666 * 26 17 15 44 44 H 1.08998 * 117.49966 * 0.02562 * 27 26 17 45 45 H 1.09000 * 117.49394 * 145.02360 * 27 26 17 46 46 H 1.09001 * 117.49571 * 214.98189 * 28 26 17 47 47 H 1.09000 * 117.50145 * 359.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8590 1.1587 -2.4115 7 6 2.6498 -0.7284 -3.5876 8 6 2.7017 0.2549 -4.7586 9 6 3.2039 -0.4555 -5.9891 10 6 4.5583 -0.4877 -6.2643 11 6 5.0193 -1.1435 -7.3904 12 6 4.1252 -1.7581 -8.2471 13 6 2.7704 -1.7213 -7.9747 14 6 2.3098 -1.0700 -6.8457 15 6 2.0323 -0.7105 1.2304 16 8 2.7297 -1.6967 1.1191 17 7 1.7068 -0.2501 2.4545 18 6 2.1642 -0.8962 3.5739 19 1 1.4806 -1.1404 4.3736 20 6 3.5071 -1.2367 3.6795 21 7 3.9042 -2.0587 4.6248 22 14 4.7482 -0.5262 2.4776 23 1 4.9489 -1.4762 1.3540 24 1 4.2417 0.7658 1.9490 25 1 6.0405 -0.3035 3.1744 26 6 0.8650 0.9413 2.5890 27 6 0.6690 1.5128 3.9947 28 6 -0.4805 0.7791 3.2992 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2490 -1.6317 -1.1528 33 1 3.6492 -1.1202 -3.3980 34 1 1.9776 -1.5507 -3.8326 35 1 1.7025 0.6471 -4.9483 36 1 3.3741 1.0769 -4.5133 37 1 5.2564 -0.0041 -5.5972 38 1 6.0777 -1.1719 -7.6034 39 1 4.4851 -2.2666 -9.1293 40 1 2.0718 -2.2011 -8.6442 41 1 1.2513 -1.0413 -6.6330 42 1 4.8418 -2.2961 4.6988 43 1 0.9150 1.6482 1.7608 44 1 1.1667 1.0026 4.8193 45 1 0.5896 2.5956 4.0911 46 1 -1.3156 1.3796 2.9384 47 1 -0.7395 -0.2141 3.6660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337841840.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:15 Heat of formation + Delta-G solvation = -11.933662 kcal Electronic energy + Delta-G solvation = -27988.733809 eV Core-core repulsion = 24137.644555 eV Total energy + Delta-G solvation = -3851.089254 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.16211 -39.51457 -38.82193 -36.61845 -34.79776 -34.08230 -32.99136 -31.76683 -31.10704 -30.74529 -29.35194 -25.40638 -25.08272 -23.33806 -22.78949 -21.92083 -21.41360 -21.01597 -20.15495 -19.51268 -17.80226 -17.00657 -16.48288 -16.13840 -15.91479 -15.75021 -15.23501 -15.16366 -14.87967 -14.45153 -14.03507 -13.81299 -13.64428 -13.33097 -13.26185 -13.19332 -13.14677 -12.80643 -12.69508 -12.21267 -12.02578 -12.00588 -11.49399 -11.42834 -11.24832 -11.19621 -11.09542 -10.98609 -10.95095 -10.36117 -10.19885 -9.96475 -9.86899 -9.74363 -9.14525 -8.97279 -8.90244 -8.68495 -8.54387 -7.55135 -6.27689 -4.13825 1.12128 1.17759 2.76636 3.18292 3.25771 3.39739 3.54053 3.58888 3.64119 4.26389 4.41296 4.50994 4.55234 4.62830 4.77792 4.86625 4.93328 4.96363 5.00151 5.13865 5.28119 5.31927 5.32583 5.37536 5.46345 5.48854 5.51968 5.54745 5.67053 5.68662 5.77418 5.87547 5.94830 6.02991 6.07885 6.09919 6.23654 6.24536 6.28891 6.42750 6.44739 6.56860 6.64961 6.78815 6.84448 7.71539 7.75681 7.89440 8.37626 8.63873 8.75074 9.30369 9.63900 10.77481 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.002769 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.287708 B =10110.352533 C =11124.389434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.125 3.875 3 H 0.099 0.901 4 N -0.707 5.707 5 C 0.513 3.487 6 O -0.550 6.550 7 C -0.134 4.134 8 C -0.065 4.065 9 C -0.080 4.080 10 C -0.116 4.116 11 C -0.119 4.119 12 C -0.127 4.127 13 C -0.120 4.120 14 C -0.117 4.117 15 C 0.455 3.545 16 O -0.542 6.542 17 N -0.430 5.430 18 C -0.341 4.341 19 H 0.096 0.904 20 C 0.091 3.909 21 N -0.868 5.868 22 Si 0.911 3.089 23 H -0.259 1.259 24 H -0.280 1.280 25 H -0.305 1.305 26 C 0.058 3.942 27 C -0.171 4.171 28 C -0.196 4.196 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.085 0.915 32 H 0.410 0.590 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.122 0.878 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.273 0.727 43 H 0.112 0.888 44 H 0.114 0.886 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.003 3.704 -19.776 20.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.016 3.984 3 H 0.117 0.883 4 N -0.360 5.360 5 C 0.300 3.700 6 O -0.428 6.428 7 C -0.174 4.174 8 C -0.102 4.102 9 C -0.080 4.080 10 C -0.134 4.134 11 C -0.137 4.137 12 C -0.145 4.145 13 C -0.138 4.138 14 C -0.135 4.135 15 C 0.244 3.756 16 O -0.424 6.424 17 N -0.151 5.151 18 C -0.467 4.467 19 H 0.114 0.886 20 C -0.118 4.118 21 N -0.503 5.503 22 Si 0.742 3.258 23 H -0.184 1.184 24 H -0.206 1.206 25 H -0.234 1.234 26 C -0.048 4.048 27 C -0.209 4.209 28 C -0.235 4.235 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.103 0.897 32 H 0.247 0.753 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.140 0.860 42 H 0.083 0.917 43 H 0.129 0.871 44 H 0.132 0.868 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.707 3.915 -19.729 20.452 hybrid contribution 0.821 -0.169 -0.404 0.930 sum -2.887 3.746 -20.133 20.681 Atomic orbital electron populations 1.22289 0.93412 1.02997 1.03382 1.20776 0.95439 0.97528 0.84610 0.88332 1.45846 1.66469 1.14999 1.08666 1.20626 0.77506 0.87315 0.84559 1.90672 1.50845 1.15991 1.85296 1.21636 1.03630 0.99610 0.92536 1.20341 1.03002 0.96827 0.90071 1.19963 0.93557 0.98059 0.96385 1.21130 0.95145 0.99637 0.97524 1.21163 0.99668 0.97934 0.94934 1.21149 0.93538 1.00160 0.99699 1.21150 0.95718 0.99465 0.97442 1.21101 0.99617 0.98043 0.94709 1.20288 0.84774 0.85895 0.84625 1.90527 1.39297 1.27279 1.85303 1.43034 1.44992 1.22242 1.04804 1.18692 0.93602 1.37428 0.96976 0.88619 1.25341 0.97815 0.93513 0.95154 1.69691 1.17322 1.30352 1.32931 0.86299 0.78874 0.79173 0.81470 1.18427 1.20594 1.23435 1.21922 0.94861 0.91498 0.96494 1.23217 1.01701 0.98927 0.97036 1.23321 0.91954 1.02435 1.05795 0.92005 0.92112 0.89687 0.75343 0.88660 0.88696 0.90083 0.90095 0.85954 0.86136 0.86286 0.86161 0.85987 0.91681 0.87072 0.86820 0.89348 0.89292 0.88550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 9.11 37.16 0.34 -2.16 16 2 C 0.13 2.29 2.20 -69.08 -0.15 2.14 16 3 H 0.10 1.87 7.00 -51.93 -0.36 1.50 16 4 N -0.71 -11.70 4.95 -54.93 -0.27 -11.97 16 5 C 0.51 7.79 7.79 -10.99 -0.09 7.71 16 6 O -0.55 -9.80 15.64 5.55 0.09 -9.71 16 7 C -0.13 -1.50 5.68 -27.88 -0.16 -1.66 16 8 C -0.06 -0.69 4.63 -27.88 -0.13 -0.82 16 9 C -0.08 -0.80 5.13 -104.62 -0.54 -1.34 16 10 C -0.12 -1.13 9.70 -39.59 -0.38 -1.51 16 11 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 12 C -0.13 -1.06 10.05 -39.58 -0.40 -1.46 16 13 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 14 C -0.12 -1.08 9.70 -39.58 -0.38 -1.46 16 15 C 0.46 10.39 5.26 -10.99 -0.06 10.33 16 16 O -0.54 -14.10 11.74 5.54 0.07 -14.04 16 17 N -0.43 -9.95 2.43 -107.73 -0.26 -10.21 16 18 C -0.34 -9.22 8.12 -14.93 -0.12 -9.34 16 19 H 0.10 2.71 7.79 -52.49 -0.41 2.31 16 20 C 0.09 2.60 5.02 -17.47 -0.09 2.52 16 21 N -0.87 -25.89 13.96 55.50 0.77 -25.12 16 22 Si 0.91 24.02 24.66 -169.99 -4.19 19.83 16 23 H -0.26 -7.07 6.48 56.52 0.37 -6.70 16 24 H -0.28 -7.23 7.08 56.52 0.40 -6.83 16 25 H -0.31 -7.91 7.11 56.52 0.40 -7.51 16 26 C 0.06 1.05 4.30 -67.93 -0.29 0.76 16 27 C -0.17 -2.88 9.83 -26.69 -0.26 -3.14 16 28 C -0.20 -3.07 9.37 -26.69 -0.25 -3.32 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 31 H 0.08 1.24 4.35 -51.93 -0.23 1.02 16 32 H 0.41 6.59 7.79 -40.82 -0.32 6.27 16 33 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 36 H 0.08 0.93 8.04 -51.93 -0.42 0.51 16 37 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 40 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 41 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 42 H 0.27 7.70 8.31 -40.82 -0.34 7.36 16 43 H 0.11 1.81 6.27 -51.93 -0.33 1.48 16 44 H 0.11 2.21 6.93 -51.93 -0.36 1.85 16 45 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 LS Contribution 381.87 15.07 5.75 5.75 Total: -1.00 -33.43 381.87 -8.88 -42.31 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.08 Total: 8.76 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -3.76 Total: -5.62 kcal Atomic # 7 Polarization: -47.54 SS G_CDS: 0.24 Total: -47.30 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: 0.15 Total: -23.75 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -4.19 Total: 19.83 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.43 -8.88 -42.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337841840.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.381 kcal (2) G-P(sol) polarization free energy of solvation -33.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds