Wall clock time and date at job start Tue Mar 31 2020 16:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47372 * 2 1 4 4 N 1.46505 * 109.46855 * 240.00374 * 2 1 3 5 5 C 1.34776 * 120.00283 * 84.99930 * 4 2 1 6 6 O 1.21284 * 119.99793 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00091 * 179.97438 * 5 4 2 8 8 C 1.53001 * 109.46953 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.46953 * 180.02562 * 8 7 5 10 10 C 1.38236 * 120.00141 * 269.72217 * 9 8 7 11 11 C 1.38229 * 120.00106 * 179.76593 * 10 9 8 12 12 C 1.38247 * 119.99897 * 0.50995 * 11 10 9 13 13 C 1.38233 * 119.99687 * 359.74587 * 12 11 10 14 14 C 1.38235 * 119.99801 * 90.00079 * 9 8 7 15 15 C 1.50700 * 109.47095 * 120.00396 * 2 1 3 16 16 O 1.21297 * 119.99972 * 119.99739 * 15 2 1 17 17 N 1.34768 * 119.99934 * 299.99987 * 15 2 1 18 18 C 1.37101 * 120.00013 * 180.02562 * 17 15 2 19 19 H 1.08002 * 119.99711 * 228.37423 * 18 17 15 20 20 C 1.38947 * 120.00200 * 48.37429 * 18 17 15 21 21 N 1.31411 * 120.00199 * 192.25913 * 20 18 17 22 22 Si 1.86805 * 120.00014 * 12.25738 * 20 18 17 23 23 H 1.48501 * 109.46878 * 265.55699 * 22 20 18 24 24 H 1.48505 * 109.47105 * 25.55354 * 22 20 18 25 25 H 1.48498 * 109.47301 * 145.55555 * 22 20 18 26 26 C 1.46500 * 120.00179 * 359.97438 * 17 15 2 27 27 C 1.53006 * 117.49949 * 187.19608 * 26 17 15 28 28 C 1.53003 * 117.49691 * 118.53665 * 26 17 15 29 29 H 1.09001 * 109.46796 * 59.99374 * 1 2 3 30 30 H 1.09000 * 109.47372 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46858 * 299.99972 * 1 2 3 32 32 H 0.96996 * 119.99815 * 264.99964 * 4 2 1 33 33 H 1.09005 * 109.46817 * 299.99893 * 7 5 4 34 34 H 1.09000 * 109.47107 * 60.00013 * 7 5 4 35 35 H 1.09004 * 109.47035 * 300.00175 * 8 7 5 36 36 H 1.09000 * 109.47558 * 59.99854 * 8 7 5 37 37 H 1.07995 * 119.99550 * 0.02562 * 10 9 8 38 38 H 1.08000 * 120.00356 * 180.23043 * 11 10 9 39 39 H 1.08000 * 119.99762 * 179.72262 * 12 11 10 40 40 H 1.08002 * 119.99593 * 179.97438 * 13 12 11 41 41 H 1.08001 * 120.00348 * 359.97438 * 14 9 8 42 42 H 0.97002 * 120.00227 * 180.02562 * 21 20 18 43 43 H 1.08999 * 115.54960 * 332.86666 * 26 17 15 44 44 H 1.08998 * 117.49966 * 0.02562 * 27 26 17 45 45 H 1.09000 * 117.49394 * 145.02360 * 27 26 17 46 46 H 1.09001 * 117.49571 * 214.98189 * 28 26 17 47 47 H 1.09000 * 117.50145 * 359.97438 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8590 1.1587 -2.4115 7 6 2.6498 -0.7284 -3.5876 8 6 2.7017 0.2549 -4.7586 9 6 3.2039 -0.4555 -5.9891 10 6 4.5583 -0.4877 -6.2643 11 6 5.0193 -1.1435 -7.3904 12 6 4.1252 -1.7581 -8.2471 13 6 2.7704 -1.7213 -7.9747 14 6 2.3098 -1.0700 -6.8457 15 6 2.0323 -0.7105 1.2304 16 8 2.7297 -1.6967 1.1191 17 7 1.7068 -0.2501 2.4545 18 6 2.1642 -0.8962 3.5739 19 1 1.4806 -1.1404 4.3736 20 6 3.5071 -1.2367 3.6795 21 7 3.9042 -2.0587 4.6248 22 14 4.7482 -0.5262 2.4776 23 1 4.9489 -1.4762 1.3540 24 1 4.2417 0.7658 1.9490 25 1 6.0405 -0.3035 3.1744 26 6 0.8650 0.9413 2.5890 27 6 0.6690 1.5128 3.9947 28 6 -0.4805 0.7791 3.2992 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 2.2490 -1.6317 -1.1528 33 1 3.6492 -1.1202 -3.3980 34 1 1.9776 -1.5507 -3.8326 35 1 1.7025 0.6471 -4.9483 36 1 3.3741 1.0769 -4.5133 37 1 5.2564 -0.0041 -5.5972 38 1 6.0777 -1.1719 -7.6034 39 1 4.4851 -2.2666 -9.1293 40 1 2.0718 -2.2011 -8.6442 41 1 1.2513 -1.0413 -6.6330 42 1 4.8418 -2.2961 4.6988 43 1 0.9150 1.6482 1.7608 44 1 1.1667 1.0026 4.8193 45 1 0.5896 2.5956 4.0911 46 1 -1.3156 1.3796 2.9384 47 1 -0.7395 -0.2141 3.6660 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337841840.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:14 Heat of formation + Delta-G solvation = -32.492676 kcal Electronic energy + Delta-G solvation = -27989.625315 eV Core-core repulsion = 24137.644555 eV Total energy + Delta-G solvation = -3851.980760 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.62787 -40.59502 -39.92216 -38.19876 -36.20671 -34.98182 -34.89983 -33.56768 -32.07053 -31.74637 -30.29410 -27.25361 -26.13666 -24.72600 -23.43590 -23.26696 -22.77127 -22.04600 -21.41078 -21.14213 -19.29531 -18.25316 -17.83039 -17.41376 -17.32822 -17.02719 -16.72293 -16.02797 -15.98516 -15.70908 -15.55946 -15.31064 -14.96928 -14.77800 -14.64919 -14.34534 -14.12359 -13.99347 -13.67969 -13.64098 -13.50460 -13.10615 -12.91962 -12.79990 -12.64576 -12.46306 -12.22029 -12.19637 -12.14353 -11.89159 -11.72772 -11.61893 -11.32175 -10.99137 -10.85814 -10.49101 -10.15946 -9.79969 -9.59841 -9.38046 -8.46431 -6.30078 0.44606 0.52241 1.15047 1.26958 1.39460 1.56754 1.76071 2.00640 2.30489 2.63709 2.90715 2.92269 3.14588 3.55225 3.66987 3.93025 3.97574 4.03102 4.08426 4.11531 4.14511 4.17408 4.24087 4.26587 4.30687 4.35689 4.60873 4.64151 4.67283 4.73945 4.81561 4.89248 4.94568 4.94969 5.07102 5.19876 5.20711 5.21003 5.23469 5.34315 5.47505 5.60120 5.65206 5.65578 5.74769 5.83172 6.14844 6.47509 6.64124 6.81078 7.14193 7.24477 7.72155 8.62339 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017493 B = 0.002769 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.287708 B =10110.352533 C =11124.389434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.134 3.866 3 H 0.097 0.903 4 N -0.712 5.712 5 C 0.515 3.485 6 O -0.575 6.575 7 C -0.125 4.125 8 C -0.057 4.057 9 C -0.092 4.092 10 C -0.132 4.132 11 C -0.128 4.128 12 C -0.132 4.132 13 C -0.126 4.126 14 C -0.126 4.126 15 C 0.451 3.549 16 O -0.581 6.581 17 N -0.445 5.445 18 C -0.326 4.326 19 H 0.072 0.928 20 C 0.045 3.955 21 N -0.911 5.911 22 Si 0.958 3.042 23 H -0.276 1.276 24 H -0.272 1.272 25 H -0.302 1.302 26 C 0.033 3.967 27 C -0.172 4.172 28 C -0.170 4.170 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.412 0.588 33 H 0.102 0.898 34 H 0.117 0.883 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.124 0.876 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.141 0.859 41 H 0.134 0.866 42 H 0.274 0.726 43 H 0.140 0.860 44 H 0.079 0.921 45 H 0.125 0.875 46 H 0.134 0.866 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.417 4.954 -22.256 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.025 3.975 3 H 0.115 0.885 4 N -0.365 5.365 5 C 0.303 3.697 6 O -0.455 6.455 7 C -0.165 4.165 8 C -0.094 4.094 9 C -0.092 4.092 10 C -0.150 4.150 11 C -0.146 4.146 12 C -0.150 4.150 13 C -0.143 4.143 14 C -0.144 4.144 15 C 0.241 3.759 16 O -0.465 6.465 17 N -0.165 5.165 18 C -0.453 4.453 19 H 0.089 0.911 20 C -0.159 4.159 21 N -0.549 5.549 22 Si 0.788 3.212 23 H -0.203 1.203 24 H -0.197 1.197 25 H -0.231 1.231 26 C -0.071 4.071 27 C -0.210 4.210 28 C -0.208 4.208 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.249 0.751 33 H 0.120 0.880 34 H 0.135 0.865 35 H 0.097 0.903 36 H 0.087 0.913 37 H 0.142 0.858 38 H 0.154 0.846 39 H 0.158 0.842 40 H 0.159 0.841 41 H 0.151 0.849 42 H 0.083 0.917 43 H 0.157 0.843 44 H 0.097 0.903 45 H 0.143 0.857 46 H 0.152 0.848 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.145 5.196 -22.212 23.385 hybrid contribution 1.161 -0.568 0.327 1.334 sum -3.983 4.628 -21.885 22.721 Atomic orbital electron populations 1.22229 0.90805 1.03365 1.04594 1.20667 0.97287 0.96546 0.83013 0.88508 1.45948 1.66849 1.15116 1.08578 1.21240 0.76520 0.87020 0.84901 1.90657 1.51972 1.17202 1.85693 1.21654 1.04244 0.99911 0.90689 1.20228 1.02575 0.96375 0.90263 1.19934 0.93922 0.98861 0.96456 1.21295 0.95271 1.00227 0.98218 1.21429 1.00778 0.97699 0.94697 1.21485 0.93578 0.99747 1.00205 1.21463 0.96313 0.99122 0.97445 1.21313 1.00175 0.97995 0.94886 1.21109 0.83501 0.85481 0.85827 1.90497 1.40848 1.29077 1.86109 1.43188 1.45648 1.23785 1.03871 1.18540 0.92764 1.36746 0.97296 0.91064 1.25910 0.99464 0.94249 0.96326 1.69767 1.17608 1.32606 1.34927 0.85553 0.77723 0.78474 0.79460 1.20299 1.19663 1.23104 1.22260 0.95928 0.90520 0.98395 1.23259 1.01987 1.00882 0.94867 1.23362 0.91999 1.01919 1.03513 0.90496 0.92199 0.88649 0.75148 0.87962 0.86512 0.90315 0.91332 0.85779 0.84594 0.84200 0.84109 0.84853 0.91691 0.84274 0.90256 0.85670 0.84821 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.24 9.11 71.98 0.66 -3.58 16 2 C 0.13 4.67 2.20 44.24 0.10 4.77 16 3 H 0.10 3.46 7.00 -2.39 -0.02 3.45 16 4 N -0.71 -22.59 4.95 -446.08 -2.21 -24.80 16 5 C 0.51 14.81 7.79 87.66 0.68 15.50 16 6 O -0.58 -19.58 15.64 -3.04 -0.05 -19.63 16 7 C -0.13 -2.61 5.68 29.85 0.17 -2.44 16 8 C -0.06 -1.15 4.63 29.85 0.14 -1.01 16 9 C -0.09 -1.72 5.13 -19.87 -0.10 -1.82 16 10 C -0.13 -2.43 9.70 22.27 0.22 -2.21 16 11 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 12 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 13 C -0.13 -1.84 10.05 22.27 0.22 -1.61 16 14 C -0.13 -2.08 9.70 22.27 0.22 -1.87 16 15 C 0.45 20.32 5.26 87.66 0.46 20.78 16 16 O -0.58 -30.49 11.74 -3.08 -0.04 -30.53 16 17 N -0.44 -20.34 2.43 -613.12 -1.49 -21.84 16 18 C -0.33 -18.02 8.12 84.04 0.68 -17.34 16 19 H 0.07 4.21 7.79 -2.91 -0.02 4.19 16 20 C 0.04 2.62 5.02 84.93 0.43 3.05 16 21 N -0.91 -56.29 13.96 21.66 0.30 -55.99 16 22 Si 0.96 50.54 24.66 68.60 1.69 52.23 16 23 H -0.28 -15.25 6.48 99.48 0.64 -14.60 16 24 H -0.27 -13.68 7.08 99.48 0.70 -12.98 16 25 H -0.30 -15.51 7.11 99.48 0.71 -14.81 16 26 C 0.03 1.13 4.30 44.99 0.19 1.32 16 27 C -0.17 -5.45 9.83 30.62 0.30 -5.15 16 28 C -0.17 -4.81 9.37 30.62 0.29 -4.52 16 29 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.10 2.45 4.35 -2.39 -0.01 2.43 16 32 H 0.41 12.89 7.79 -92.71 -0.72 12.17 16 33 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 34 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 35 H 0.08 1.61 8.04 -2.38 -0.02 1.59 16 36 H 0.07 1.54 8.04 -2.39 -0.02 1.52 16 37 H 0.12 2.11 8.06 -2.91 -0.02 2.09 16 38 H 0.14 1.64 8.06 -2.91 -0.02 1.62 16 39 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.14 1.40 8.06 -2.91 -0.02 1.38 16 41 H 0.13 1.81 8.06 -2.91 -0.02 1.78 16 42 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 43 H 0.14 4.02 6.27 -2.39 -0.01 4.00 16 44 H 0.08 3.09 6.93 -2.39 -0.02 3.08 16 45 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 46 H 0.13 2.66 8.14 -2.39 -0.02 2.64 16 47 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -74.57 381.87 3.50 -71.08 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 0.19 Total: 29.12 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: 5.10 Total: 0.36 kcal Atomic # 7 Polarization: -99.23 SS G_CDS: -3.40 Total: -102.63 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -0.08 Total: -50.16 kcal Atomic # 14 Polarization: 50.54 SS G_CDS: 1.69 Total: 52.23 kcal Total: -74.57 3.50 -71.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337841840.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.584 kcal (2) G-P(sol) polarization free energy of solvation -74.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds