Wall clock time and date at job start Tue Mar 31 2020 16:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46916 * 2 1 4 4 C 1.52996 * 109.47251 * 240.00553 * 2 1 3 5 5 O 1.42908 * 109.46884 * 305.43621 * 4 2 1 6 6 N 1.46500 * 109.47036 * 119.99869 * 2 1 3 7 7 C 1.46496 * 120.00058 * 55.05928 * 6 2 1 8 8 C 1.34773 * 119.99801 * 235.05222 * 6 2 1 9 9 O 1.21674 * 120.00304 * 5.44833 * 8 6 2 10 10 C 1.46915 * 119.99774 * 185.44453 * 8 6 2 11 11 C 1.36369 * 126.76867 * 25.49173 * 10 8 6 12 12 N 1.35478 * 109.77047 * 179.97438 * 11 10 8 13 13 C 1.46502 * 124.78778 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46617 * 265.02052 * 13 12 11 15 15 C 1.50701 * 109.46604 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00145 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99685 * 179.72620 * 15 14 13 18 18 N 1.31521 * 119.99904 * 180.27474 * 17 15 14 19 19 Si 1.86800 * 120.00246 * 0.27035 * 17 15 14 20 20 H 1.48494 * 109.46913 * 90.00210 * 19 17 15 21 21 H 1.48496 * 109.47081 * 210.00559 * 19 17 15 22 22 H 1.48499 * 109.46835 * 330.00076 * 19 17 15 23 23 C 1.37964 * 110.42395 * 0.23264 * 12 11 10 24 24 C 1.39128 * 133.18616 * 180.39060 * 23 12 11 25 25 C 1.37757 * 119.92963 * 179.62081 * 24 23 12 26 26 C 1.38758 * 120.63664 * 359.78721 * 25 24 23 27 27 C 1.37759 * 120.29821 * 359.97097 * 26 25 24 28 28 C 1.39270 * 119.67230 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.46916 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47428 * 299.99835 * 1 2 3 31 31 H 1.09004 * 109.47420 * 60.00019 * 1 2 3 32 32 H 1.08998 * 109.47792 * 65.43293 * 4 2 1 33 33 H 1.09004 * 109.47348 * 185.44133 * 4 2 1 34 34 H 0.96696 * 114.00115 * 180.02562 * 5 4 2 35 35 H 1.08995 * 109.47417 * 215.10469 * 7 6 2 36 36 H 1.09000 * 109.47229 * 335.10654 * 7 6 2 37 37 H 1.09007 * 109.46908 * 95.10278 * 7 6 2 38 38 H 1.08003 * 125.11719 * 359.95024 * 11 10 8 39 39 H 1.08992 * 109.46896 * 145.01900 * 13 12 11 40 40 H 1.08997 * 109.46777 * 25.01616 * 13 12 11 41 41 H 1.08992 * 109.47612 * 60.00287 * 14 13 12 42 42 H 1.08997 * 109.47191 * 299.99311 * 14 13 12 43 43 H 0.97002 * 120.00073 * 179.97438 * 18 17 15 44 44 H 1.07995 * 120.03319 * 359.40174 * 24 23 12 45 45 H 1.07997 * 119.68214 * 179.76003 * 25 24 23 46 46 H 1.08000 * 119.85341 * 179.97438 * 26 25 24 47 47 H 1.08001 * 120.15915 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 1.4623 -2.0265 -1.3149 6 7 2.0183 -0.6906 1.1962 7 6 1.5774 -2.0576 1.4840 8 6 2.8732 -0.0682 2.0317 9 8 3.1623 1.0992 1.8477 10 6 3.4561 -0.7995 3.1648 11 6 3.6444 -2.1470 3.2566 12 7 4.2081 -2.4506 4.4506 13 6 4.5520 -3.8045 4.8924 14 6 3.4079 -4.3718 5.7351 15 6 3.7619 -5.7642 6.1901 16 1 4.7080 -6.2009 5.9063 17 6 2.8801 -6.4786 6.9730 18 7 3.1913 -7.6917 7.3746 19 14 1.2433 -5.7236 7.4635 20 1 0.2187 -6.0564 6.4415 21 1 0.8232 -6.2654 8.7806 22 1 1.3873 -4.2486 7.5581 23 6 4.4073 -1.3056 5.1940 24 6 4.9469 -1.0708 6.4547 25 6 5.0225 0.2158 6.9412 26 6 4.5687 1.2861 6.1835 27 6 4.0357 1.0744 4.9309 28 6 3.9533 -0.2212 4.4267 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.7584 -0.1542 -2.1366 33 1 3.1257 -0.8063 -1.2019 34 1 1.7421 -2.5423 -2.0835 35 1 1.4809 -2.1890 2.5617 36 1 0.6129 -2.2361 1.0085 37 1 2.3103 -2.7651 1.0959 38 1 3.3831 -2.8644 2.4927 39 1 5.4622 -3.7710 5.4910 40 1 4.7125 -4.4408 4.0222 41 1 2.4977 -4.4052 5.1365 42 1 3.2474 -3.7355 6.6053 43 1 2.5710 -8.1942 7.9258 44 1 5.3029 -1.8966 7.0527 45 1 5.4385 0.3932 7.9219 46 1 4.6336 2.2895 6.5775 47 1 3.6828 1.9090 4.3433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338691897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:20 Heat of formation + Delta-G solvation = -21.583996 kcal Electronic energy + Delta-G solvation = -28555.161290 eV Core-core repulsion = 24703.653566 eV Total energy + Delta-G solvation = -3851.507724 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.37311 -39.65169 -37.40480 -36.97057 -35.27265 -34.17358 -32.60747 -31.68238 -30.61470 -29.09205 -28.49249 -27.22853 -26.34982 -25.36501 -23.02544 -22.52183 -21.57295 -20.67350 -20.02850 -19.06025 -17.86095 -17.26881 -16.86146 -16.48820 -16.13358 -15.52727 -15.33352 -15.18674 -14.78665 -14.50744 -14.15823 -13.93089 -13.87540 -13.63070 -13.31758 -13.09351 -13.01887 -12.93560 -12.78232 -12.45910 -12.32884 -11.99288 -11.93331 -11.51664 -11.47883 -11.31539 -11.18950 -11.11714 -10.74289 -10.41979 -10.32070 -10.28551 -10.00558 -9.68438 -9.49976 -9.31733 -8.73341 -8.65107 -8.00494 -7.40562 -6.24064 -4.26119 1.23627 1.80214 2.26727 2.92848 3.14041 3.18903 3.28006 3.32165 3.49629 4.01943 4.18797 4.28815 4.57043 4.79478 4.85697 4.91756 4.93713 5.05256 5.09547 5.21965 5.23215 5.26586 5.35279 5.37444 5.46712 5.53615 5.59792 5.70051 5.76574 5.80671 5.85643 5.89267 5.91808 5.95430 6.10527 6.15956 6.27661 6.56725 6.66063 6.81063 6.86379 6.89231 6.91210 7.08231 7.31917 7.38541 7.43093 7.49221 7.59445 8.26085 8.37102 8.76403 9.36407 10.88268 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009593 B = 0.004064 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.052644 B = 6888.268909 C = 8910.501459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.140 3.860 3 H 0.111 0.889 4 C 0.067 3.933 5 O -0.566 6.566 6 N -0.609 5.609 7 C 0.082 3.918 8 C 0.597 3.403 9 O -0.552 6.552 10 C -0.253 4.253 11 C 0.116 3.884 12 N -0.456 5.456 13 C 0.111 3.889 14 C -0.023 4.023 15 C -0.530 4.530 16 H 0.076 0.924 17 C 0.076 3.924 18 N -0.895 5.895 19 Si 0.877 3.123 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.265 1.265 23 C 0.091 3.909 24 C -0.114 4.114 25 C -0.110 4.110 26 C -0.145 4.145 27 C -0.074 4.074 28 C -0.063 4.063 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.377 0.623 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.179 0.821 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.019 0.981 42 H 0.025 0.975 43 H 0.266 0.734 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.119 0.881 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.860 14.155 -14.059 20.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.129 0.871 4 C -0.012 4.012 5 O -0.371 6.371 6 N -0.342 5.342 7 C -0.061 4.061 8 C 0.389 3.611 9 O -0.431 6.431 10 C -0.264 4.264 11 C -0.019 4.019 12 N -0.134 5.134 13 C -0.009 4.009 14 C -0.061 4.061 15 C -0.568 4.568 16 H 0.094 0.906 17 C -0.127 4.127 18 N -0.532 5.532 19 Si 0.703 3.297 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.189 1.189 23 C -0.014 4.014 24 C -0.134 4.134 25 C -0.129 4.129 26 C -0.164 4.164 27 C -0.092 4.092 28 C -0.067 4.067 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.224 0.776 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.196 0.804 39 H 0.104 0.896 40 H 0.107 0.893 41 H 0.037 0.963 42 H 0.043 0.957 43 H 0.076 0.924 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.137 0.863 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -1.958 14.466 -13.368 19.794 hybrid contribution -0.640 -0.245 -0.226 0.722 sum -2.598 14.221 -13.593 19.843 Atomic orbital electron populations 1.22037 0.94358 1.03123 1.02022 1.21117 0.95006 0.97149 0.83107 0.87141 1.22591 0.96906 0.84318 0.97394 1.86511 1.72436 1.27585 1.50608 1.47662 1.46369 1.16006 1.24194 1.22006 1.00889 0.81851 1.01326 1.17355 0.77440 0.85625 0.80667 1.90715 1.62159 1.16468 1.73795 1.19695 1.17104 0.92308 0.97246 1.22565 0.95039 0.95640 0.88623 1.44426 1.48698 1.07394 1.12841 1.22226 1.00911 0.77210 1.00512 1.19928 0.93433 0.97456 0.95315 1.20843 1.05754 0.97244 1.32978 0.90603 1.24937 0.98203 0.94554 0.95050 1.69889 1.36793 1.10709 1.35827 0.86822 0.84219 0.80256 0.78360 1.20048 1.21053 1.18945 1.18292 1.03180 0.85382 0.94584 1.20164 1.02324 0.97727 0.93227 1.20757 1.00823 0.91652 0.99661 1.20873 1.02013 0.98656 0.94828 1.20498 0.98538 0.95029 0.95158 1.18693 1.02152 0.92890 0.92972 0.91124 0.92316 0.91776 0.92796 0.93327 0.77620 0.91095 0.90196 0.92560 0.80448 0.89596 0.89333 0.96308 0.95710 0.92369 0.85742 0.85919 0.86271 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 8.89 37.16 0.33 -1.13 16 2 C 0.14 1.48 3.16 -67.93 -0.21 1.26 16 3 H 0.11 1.29 6.91 -51.93 -0.36 0.93 16 4 C 0.07 0.55 6.83 37.16 0.25 0.80 16 5 O -0.57 -4.40 10.82 -35.23 -0.38 -4.78 16 6 N -0.61 -7.72 2.76 -175.40 -0.48 -8.21 16 7 C 0.08 0.92 7.23 59.84 0.43 1.35 16 8 C 0.60 9.51 7.62 -12.75 -0.10 9.41 16 9 O -0.55 -10.13 16.13 5.21 0.08 -10.04 16 10 C -0.25 -4.16 5.71 -103.31 -0.59 -4.75 16 11 C 0.12 1.76 9.09 -16.62 -0.15 1.61 16 12 N -0.46 -7.72 2.74 -114.22 -0.31 -8.03 16 13 C 0.11 1.96 5.89 -4.04 -0.02 1.94 16 14 C -0.02 -0.51 4.36 -27.88 -0.12 -0.63 16 15 C -0.53 -13.88 9.66 -34.44 -0.33 -14.21 16 16 H 0.08 2.11 7.99 -52.49 -0.42 1.69 16 17 C 0.08 2.08 5.47 -17.82 -0.10 1.98 16 18 N -0.89 -26.16 13.96 55.43 0.77 -25.39 16 19 Si 0.88 20.86 27.47 -169.99 -4.67 16.19 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 23 C 0.09 1.59 6.79 -83.96 -0.57 1.02 16 24 C -0.11 -1.85 9.97 -39.43 -0.39 -2.24 16 25 C -0.11 -1.55 10.01 -39.57 -0.40 -1.95 16 26 C -0.14 -2.03 10.03 -39.56 -0.40 -2.43 16 27 C -0.07 -1.19 10.02 -39.37 -0.39 -1.58 16 28 C -0.06 -1.10 6.29 -104.95 -0.66 -1.76 16 29 H 0.07 0.68 5.90 -51.93 -0.31 0.37 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.38 1.46 9.12 45.56 0.42 1.87 16 35 H 0.07 0.87 6.21 -51.93 -0.32 0.55 16 36 H 0.08 0.83 5.69 -51.93 -0.30 0.53 16 37 H 0.06 0.57 6.82 -51.93 -0.35 0.22 16 38 H 0.18 2.17 5.44 -52.48 -0.29 1.89 16 39 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.09 1.43 8.11 -51.93 -0.42 1.01 16 41 H 0.02 0.41 7.58 -51.93 -0.39 0.02 16 42 H 0.02 0.57 7.19 -51.93 -0.37 0.20 16 43 H 0.27 7.31 8.31 -40.82 -0.34 6.98 16 44 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 45 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 46 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 47 H 0.12 1.95 7.87 -52.49 -0.41 1.54 16 LS Contribution 379.67 15.07 5.72 5.72 Total: -1.00 -32.86 379.67 -8.77 -41.63 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.08 Total: 4.21 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -3.42 Total: -11.30 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: -0.02 Total: -41.63 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.30 Total: -14.82 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.67 Total: 16.19 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.86 -8.77 -41.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338691897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.048 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds