Wall clock time and date at job start Tue Mar 31 2020 16:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46916 * 2 1 4 4 C 1.52996 * 109.47251 * 240.00553 * 2 1 3 5 5 O 1.42908 * 109.46884 * 305.43621 * 4 2 1 6 6 N 1.46500 * 109.47036 * 119.99869 * 2 1 3 7 7 C 1.46496 * 120.00058 * 55.05928 * 6 2 1 8 8 C 1.34773 * 119.99801 * 235.05222 * 6 2 1 9 9 O 1.21674 * 120.00304 * 5.44833 * 8 6 2 10 10 C 1.46915 * 119.99774 * 185.44453 * 8 6 2 11 11 C 1.36369 * 126.76867 * 25.49173 * 10 8 6 12 12 N 1.35478 * 109.77047 * 179.97438 * 11 10 8 13 13 C 1.46502 * 124.78778 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46617 * 265.02052 * 13 12 11 15 15 C 1.50701 * 109.46604 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00145 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99685 * 179.72620 * 15 14 13 18 18 N 1.31521 * 119.99904 * 180.27474 * 17 15 14 19 19 Si 1.86800 * 120.00246 * 0.27035 * 17 15 14 20 20 H 1.48494 * 109.46913 * 90.00210 * 19 17 15 21 21 H 1.48496 * 109.47081 * 210.00559 * 19 17 15 22 22 H 1.48499 * 109.46835 * 330.00076 * 19 17 15 23 23 C 1.37964 * 110.42395 * 0.23264 * 12 11 10 24 24 C 1.39128 * 133.18616 * 180.39060 * 23 12 11 25 25 C 1.37757 * 119.92963 * 179.62081 * 24 23 12 26 26 C 1.38758 * 120.63664 * 359.78721 * 25 24 23 27 27 C 1.37759 * 120.29821 * 359.97097 * 26 25 24 28 28 C 1.39270 * 119.67230 * 0.02562 * 27 26 25 29 29 H 1.09000 * 109.46916 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47428 * 299.99835 * 1 2 3 31 31 H 1.09004 * 109.47420 * 60.00019 * 1 2 3 32 32 H 1.08998 * 109.47792 * 65.43293 * 4 2 1 33 33 H 1.09004 * 109.47348 * 185.44133 * 4 2 1 34 34 H 0.96696 * 114.00115 * 180.02562 * 5 4 2 35 35 H 1.08995 * 109.47417 * 215.10469 * 7 6 2 36 36 H 1.09000 * 109.47229 * 335.10654 * 7 6 2 37 37 H 1.09007 * 109.46908 * 95.10278 * 7 6 2 38 38 H 1.08003 * 125.11719 * 359.95024 * 11 10 8 39 39 H 1.08992 * 109.46896 * 145.01900 * 13 12 11 40 40 H 1.08997 * 109.46777 * 25.01616 * 13 12 11 41 41 H 1.08992 * 109.47612 * 60.00287 * 14 13 12 42 42 H 1.08997 * 109.47191 * 299.99311 * 14 13 12 43 43 H 0.97002 * 120.00073 * 179.97438 * 18 17 15 44 44 H 1.07995 * 120.03319 * 359.40174 * 24 23 12 45 45 H 1.07997 * 119.68214 * 179.76003 * 25 24 23 46 46 H 1.08000 * 119.85341 * 179.97438 * 26 25 24 47 47 H 1.08001 * 120.15915 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2493 5 8 1.4623 -2.0265 -1.3149 6 7 2.0183 -0.6906 1.1962 7 6 1.5774 -2.0576 1.4840 8 6 2.8732 -0.0682 2.0317 9 8 3.1623 1.0992 1.8477 10 6 3.4561 -0.7995 3.1648 11 6 3.6444 -2.1470 3.2566 12 7 4.2081 -2.4506 4.4506 13 6 4.5520 -3.8045 4.8924 14 6 3.4079 -4.3718 5.7351 15 6 3.7619 -5.7642 6.1901 16 1 4.7080 -6.2009 5.9063 17 6 2.8801 -6.4786 6.9730 18 7 3.1913 -7.6917 7.3746 19 14 1.2433 -5.7236 7.4635 20 1 0.2187 -6.0564 6.4415 21 1 0.8232 -6.2654 8.7806 22 1 1.3873 -4.2486 7.5581 23 6 4.4073 -1.3056 5.1940 24 6 4.9469 -1.0708 6.4547 25 6 5.0225 0.2158 6.9412 26 6 4.5687 1.2861 6.1835 27 6 4.0357 1.0744 4.9309 28 6 3.9533 -0.2212 4.4267 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.7584 -0.1542 -2.1366 33 1 3.1257 -0.8063 -1.2019 34 1 1.7421 -2.5423 -2.0835 35 1 1.4809 -2.1890 2.5617 36 1 0.6129 -2.2361 1.0085 37 1 2.3103 -2.7651 1.0959 38 1 3.3831 -2.8644 2.4927 39 1 5.4622 -3.7710 5.4910 40 1 4.7125 -4.4408 4.0222 41 1 2.4977 -4.4052 5.1365 42 1 3.2474 -3.7355 6.6053 43 1 2.5710 -8.1942 7.9258 44 1 5.3029 -1.8966 7.0527 45 1 5.4385 0.3932 7.9219 46 1 4.6336 2.2895 6.5775 47 1 3.6828 1.9090 4.3433 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338691897.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:19 Heat of formation + Delta-G solvation = -41.938430 kcal Electronic energy + Delta-G solvation = -28556.043925 eV Core-core repulsion = 24703.653566 eV Total energy + Delta-G solvation = -3852.390358 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.59365 -40.71503 -38.26963 -38.15333 -36.20801 -35.81448 -34.22305 -32.77964 -31.96173 -30.46774 -29.70767 -28.12775 -27.21696 -26.86336 -24.18155 -23.83140 -23.05586 -21.83372 -21.24625 -20.07920 -19.14513 -18.67512 -17.89946 -17.72843 -17.14049 -16.75538 -16.50558 -16.36684 -16.22208 -15.69940 -15.43353 -15.13391 -14.93582 -14.85817 -14.60383 -14.49911 -14.39159 -14.09290 -13.66834 -13.63894 -13.47263 -13.14885 -13.00085 -12.93869 -12.78116 -12.56310 -12.28619 -12.09923 -12.02794 -11.90569 -11.82288 -11.81417 -11.51648 -11.02318 -10.82591 -10.78748 -10.57728 -9.65552 -9.21817 -8.64478 -8.34714 -6.40015 0.03898 0.60516 1.04400 1.31309 1.35657 1.44738 1.75676 2.02053 2.30180 2.31745 2.97647 3.01146 3.44277 3.61985 3.66720 3.70635 3.90826 4.07024 4.12727 4.21548 4.28032 4.30918 4.32459 4.42236 4.45130 4.57891 4.58361 4.60747 4.62053 4.70641 4.72805 4.80497 4.83315 5.00818 5.05893 5.09439 5.15559 5.19998 5.33785 5.49675 5.51598 5.59855 5.64013 5.72555 5.81446 6.13702 6.21397 6.25101 6.40482 6.67675 6.95087 7.21427 7.25707 8.80810 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009593 B = 0.004064 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.052644 B = 6888.268909 C = 8910.501459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.130 3.870 3 H 0.095 0.905 4 C 0.076 3.924 5 O -0.577 6.577 6 N -0.601 5.601 7 C 0.082 3.918 8 C 0.593 3.407 9 O -0.587 6.587 10 C -0.268 4.268 11 C 0.125 3.875 12 N -0.463 5.463 13 C 0.124 3.876 14 C -0.016 4.016 15 C -0.529 4.529 16 H 0.049 0.951 17 C 0.020 3.980 18 N -0.941 5.941 19 Si 0.937 3.063 20 H -0.264 1.264 21 H -0.284 1.284 22 H -0.259 1.259 23 C 0.068 3.932 24 C -0.132 4.132 25 C -0.104 4.104 26 C -0.136 4.136 27 C -0.091 4.091 28 C -0.087 4.087 29 H 0.070 0.930 30 H 0.044 0.956 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.040 0.960 34 H 0.395 0.605 35 H 0.060 0.940 36 H 0.091 0.909 37 H 0.071 0.929 38 H 0.206 0.794 39 H 0.086 0.914 40 H 0.106 0.894 41 H 0.024 0.976 42 H 0.014 0.986 43 H 0.268 0.732 44 H 0.125 0.875 45 H 0.155 0.845 46 H 0.151 0.849 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.811 15.107 -14.958 21.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.027 3.973 3 H 0.113 0.887 4 C -0.003 4.003 5 O -0.385 6.385 6 N -0.333 5.333 7 C -0.061 4.061 8 C 0.384 3.616 9 O -0.469 6.469 10 C -0.278 4.278 11 C -0.009 4.009 12 N -0.141 5.141 13 C 0.004 3.996 14 C -0.054 4.054 15 C -0.567 4.567 16 H 0.067 0.933 17 C -0.179 4.179 18 N -0.581 5.581 19 Si 0.762 3.238 20 H -0.189 1.189 21 H -0.210 1.210 22 H -0.183 1.183 23 C -0.036 4.036 24 C -0.152 4.152 25 C -0.123 4.123 26 C -0.154 4.154 27 C -0.110 4.110 28 C -0.091 4.091 29 H 0.089 0.911 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.245 0.755 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.089 0.911 38 H 0.222 0.778 39 H 0.104 0.896 40 H 0.124 0.876 41 H 0.042 0.958 42 H 0.033 0.967 43 H 0.077 0.923 44 H 0.143 0.857 45 H 0.172 0.828 46 H 0.169 0.831 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.925 15.411 -14.312 21.234 hybrid contribution -0.295 -0.510 0.026 0.590 sum -3.220 14.900 -14.286 20.892 Atomic orbital electron populations 1.21975 0.93185 1.03179 1.02382 1.21334 0.95899 0.96725 0.83327 0.88672 1.22417 0.96233 0.84832 0.96801 1.86451 1.72505 1.27462 1.52058 1.47731 1.45055 1.16440 1.24083 1.22084 1.01900 0.81208 1.00861 1.17394 0.77919 0.85289 0.80959 1.90685 1.63664 1.17788 1.74742 1.19880 1.17642 0.92930 0.97383 1.22948 0.93788 0.95754 0.88428 1.44328 1.49559 1.06759 1.13445 1.21936 0.99088 0.77935 1.00663 1.19771 0.95169 0.94856 0.95592 1.21148 1.04466 0.99021 1.32072 0.93271 1.25752 1.01816 0.94899 0.95383 1.70018 1.38351 1.12352 1.37341 0.85850 0.80247 0.79540 0.78179 1.18860 1.20987 1.18340 1.18576 1.04120 0.85609 0.95319 1.20406 1.02909 0.98816 0.93079 1.21149 0.99621 0.90741 1.00756 1.21244 1.00164 1.00247 0.93773 1.20657 0.99528 0.94551 0.96234 1.19037 1.02826 0.93562 0.93715 0.91071 0.93676 0.89742 0.90411 0.94151 0.75462 0.92149 0.89022 0.91116 0.77769 0.89590 0.87569 0.95787 0.96734 0.92276 0.85701 0.82782 0.83104 0.86259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.89 71.98 0.64 -1.89 16 2 C 0.13 2.60 3.16 44.99 0.14 2.75 16 3 H 0.10 2.22 6.91 -2.39 -0.02 2.20 16 4 C 0.08 1.09 6.83 71.98 0.49 1.58 16 5 O -0.58 -7.35 10.82 -148.98 -1.61 -8.96 16 6 N -0.60 -14.73 2.76 -827.06 -2.28 -17.01 16 7 C 0.08 1.68 7.23 127.77 0.92 2.60 16 8 C 0.59 18.91 7.62 86.52 0.66 19.57 16 9 O -0.59 -22.00 16.13 -4.27 -0.07 -22.06 16 10 C -0.27 -8.76 5.71 -19.01 -0.11 -8.86 16 11 C 0.12 3.64 9.09 83.69 0.76 4.41 16 12 N -0.46 -15.26 2.74 -515.28 -1.41 -16.68 16 13 C 0.12 4.27 5.89 86.38 0.51 4.78 16 14 C -0.02 -0.67 4.36 29.85 0.13 -0.54 16 15 C -0.53 -27.76 9.66 25.60 0.25 -27.51 16 16 H 0.05 2.78 7.99 -2.91 -0.02 2.76 16 17 C 0.02 1.10 5.47 84.65 0.46 1.57 16 18 N -0.94 -55.76 13.96 21.45 0.30 -55.46 16 19 Si 0.94 42.62 27.47 68.60 1.88 44.50 16 20 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 22 H -0.26 -11.44 6.54 99.48 0.65 -10.79 16 23 C 0.07 2.36 6.79 38.92 0.26 2.62 16 24 C -0.13 -4.15 9.97 22.37 0.22 -3.93 16 25 C -0.10 -2.72 10.01 22.28 0.22 -2.50 16 26 C -0.14 -3.56 10.03 22.28 0.22 -3.33 16 27 C -0.09 -2.90 10.02 22.40 0.22 -2.68 16 28 C -0.09 -3.05 6.29 -20.08 -0.13 -3.17 16 29 H 0.07 1.21 5.90 -2.39 -0.01 1.19 16 30 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 32 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.40 1.87 9.12 -74.06 -0.68 1.20 16 35 H 0.06 1.39 6.21 -2.39 -0.01 1.38 16 36 H 0.09 1.70 5.69 -2.39 -0.01 1.68 16 37 H 0.07 1.26 6.82 -2.38 -0.02 1.25 16 38 H 0.21 4.58 5.44 -2.91 -0.02 4.57 16 39 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 40 H 0.11 3.27 8.11 -2.39 -0.02 3.25 16 41 H 0.02 1.00 7.58 -2.39 -0.02 0.99 16 42 H 0.01 0.65 7.19 -2.39 -0.02 0.63 16 43 H 0.27 14.92 8.31 -92.71 -0.77 14.14 16 44 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 45 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 46 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 47 H 0.12 3.82 7.87 -2.91 -0.02 3.80 16 Total: -1.00 -71.88 379.67 2.95 -68.93 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.26 Total: 21.30 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 5.89 Total: -14.55 kcal Atomic # 7 Polarization: -85.75 SS G_CDS: -3.40 Total: -89.15 kcal Atomic # 8 Polarization: -29.35 SS G_CDS: -1.68 Total: -31.03 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 1.88 Total: 44.50 kcal Total: -71.88 2.95 -68.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338691897.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.992 kcal (2) G-P(sol) polarization free energy of solvation -71.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds