Wall clock time and date at job start Tue Mar 31 2020 15:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46912 * 2 1 4 4 C 1.53004 * 109.47278 * 240.00016 * 2 1 3 5 5 C 1.50693 * 109.47130 * 174.99608 * 4 2 1 6 6 O 1.21281 * 120.00369 * 0.02562 * 5 4 2 7 7 N 1.34786 * 120.00039 * 179.97438 * 5 4 2 8 8 C 1.39120 * 119.99860 * 184.37270 * 7 5 4 9 9 C 1.38647 * 120.28887 * 325.34680 * 8 7 5 10 10 C 1.38223 * 120.03661 * 180.26219 * 9 8 7 11 11 C 1.38864 * 120.61570 * 359.73851 * 10 9 8 12 12 C 1.36475 * 120.57506 * 0.02562 * 11 10 9 13 13 C 1.40732 * 119.94463 * 359.97438 * 12 11 10 14 14 C 1.41067 * 120.30097 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00158 * 154.83018 * 14 13 12 16 16 C 1.39960 * 120.00035 * 334.81866 * 14 13 12 17 17 N 1.30850 * 120.00172 * 334.82627 * 16 14 13 18 18 Si 1.86797 * 119.99964 * 154.81633 * 16 14 13 19 19 H 1.48493 * 109.47433 * 180.02562 * 18 16 14 20 20 H 1.48507 * 109.47399 * 300.00688 * 18 16 14 21 21 H 1.48501 * 109.47019 * 60.00183 * 18 16 14 22 22 N 1.46499 * 109.47057 * 120.00357 * 2 1 3 23 23 C 1.45752 * 117.94470 * 239.99799 * 22 2 1 24 24 C 1.52919 * 110.48895 * 160.92176 * 23 22 2 25 25 C 1.53348 * 108.67135 * 50.75793 * 24 23 22 26 26 C 1.53075 * 108.42479 * 292.46780 * 25 24 23 27 27 C 1.33353 * 117.94944 * 59.74005 * 22 2 1 28 28 O 1.21281 * 118.24149 * 2.21819 * 27 22 2 29 29 H 1.08995 * 109.46991 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46953 * 299.99924 * 1 2 3 31 31 H 1.09005 * 109.46883 * 59.99869 * 1 2 3 32 32 H 1.09004 * 109.46955 * 54.99873 * 4 2 1 33 33 H 1.08999 * 109.47357 * 295.00264 * 4 2 1 34 34 H 0.96996 * 119.99503 * 4.37567 * 7 5 4 35 35 H 1.08002 * 119.97971 * 359.97438 * 9 8 7 36 36 H 1.07995 * 119.69606 * 179.76870 * 10 9 8 37 37 H 1.07997 * 119.71651 * 180.02562 * 11 10 9 38 38 H 1.08000 * 120.02277 * 180.02562 * 12 11 10 39 39 H 0.97005 * 119.99936 * 354.62807 * 17 16 14 40 40 H 1.08998 * 109.30507 * 281.23769 * 23 22 2 41 41 H 1.09005 * 109.29993 * 40.61520 * 23 22 2 42 42 H 1.09006 * 109.60709 * 170.50722 * 24 23 22 43 43 H 1.08992 * 109.60986 * 291.00184 * 24 23 22 44 44 H 1.08997 * 109.67602 * 52.20057 * 25 24 23 45 45 H 1.08996 * 109.67358 * 172.73654 * 25 24 23 46 46 H 1.08997 * 109.39885 * 169.03021 * 26 25 24 47 47 H 1.08995 * 109.39839 * 288.85829 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 8 4.1451 -0.0210 -0.4441 7 7 4.2150 -1.1804 -2.3344 8 6 5.6060 -1.1612 -2.3462 9 6 6.2947 -0.0741 -1.8303 10 6 7.6767 -0.0580 -1.8497 11 6 8.3891 -1.1266 -2.3780 12 6 7.7368 -2.2114 -2.8880 13 6 6.3301 -2.2529 -2.8804 14 6 5.6481 -3.3703 -3.4061 15 1 4.6532 -3.6079 -3.0595 16 6 6.2607 -4.1708 -4.3771 17 7 7.1915 -3.6683 -5.1473 18 14 5.7497 -5.9568 -4.5732 19 1 6.5433 -6.5821 -5.6614 20 1 5.9942 -6.6842 -3.3018 21 1 4.3054 -6.0240 -4.9119 22 7 2.0183 -0.6907 1.1961 23 6 2.8530 0.0602 2.1255 24 6 2.8768 -0.6213 3.4942 25 6 3.2232 -2.1024 3.2992 26 6 2.0608 -2.7789 2.5681 27 6 1.6670 -1.9654 1.3690 28 8 0.9974 -2.4978 0.5093 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -0.2617 -2.1370 33 1 1.7517 -1.7715 -1.2057 34 1 3.7295 -1.6008 -3.0613 35 1 5.7510 0.7627 -1.4174 36 1 8.2075 0.7932 -1.4498 37 1 9.4687 -1.0989 -2.3853 38 1 8.2997 -3.0377 -3.2963 39 1 7.4026 -2.7227 -5.0992 40 1 3.8684 0.1164 1.7333 41 1 2.4551 1.0694 2.2325 42 1 3.6305 -0.1495 4.1248 43 1 1.8970 -0.5337 3.9636 44 1 4.1323 -2.1914 2.7045 45 1 3.3712 -2.5755 4.2699 46 1 2.3651 -3.7756 2.2487 47 1 1.2074 -2.8592 3.2413 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344338691.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:58 Heat of formation + Delta-G solvation = -62.895992 kcal Electronic energy + Delta-G solvation = -29388.233947 eV Core-core repulsion = 25534.934801 eV Total energy + Delta-G solvation = -3853.299146 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.83610 -39.34244 -37.40374 -36.35924 -35.22275 -33.91069 -33.70427 -31.34913 -29.53217 -29.35002 -29.03815 -27.29232 -25.03758 -24.46233 -23.34962 -21.88786 -21.13617 -20.66674 -19.44605 -18.26680 -17.98794 -16.94908 -16.75251 -16.08876 -15.69367 -15.59709 -14.81051 -14.64705 -14.34319 -14.23547 -14.14812 -13.93918 -13.80661 -13.31084 -13.14452 -12.93944 -12.76293 -12.27141 -12.16689 -12.02429 -11.99771 -11.70083 -11.63280 -11.48476 -11.22323 -11.04213 -10.99004 -10.96466 -10.77918 -10.67950 -10.42612 -10.27741 -9.66697 -9.29927 -9.26932 -9.00683 -8.77811 -8.52108 -7.61056 -7.37303 -6.93881 -4.46172 2.60357 2.76135 2.81025 3.09889 3.14052 3.24960 3.34278 3.41693 3.95853 3.98960 4.55351 4.56271 4.69632 4.71346 4.75904 4.97430 5.12425 5.27296 5.34342 5.36821 5.46583 5.50593 5.55649 5.63082 5.69021 5.74009 5.78671 5.84425 5.86747 5.98297 6.12072 6.20194 6.21826 6.27038 6.34691 6.48945 6.68599 6.86097 6.97117 7.17896 7.40863 7.54628 7.65556 7.73985 7.79998 7.92964 8.04155 8.24926 8.31218 8.39286 8.70904 8.79915 9.03606 10.00909 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012220 B = 0.004025 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.830701 B = 6954.694575 C = 7697.420223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.163 3.837 3 H 0.090 0.910 4 C -0.165 4.165 5 C 0.502 3.498 6 O -0.544 6.544 7 N -0.639 5.639 8 C 0.009 3.991 9 C -0.073 4.073 10 C -0.243 4.243 11 C -0.093 4.093 12 C -0.209 4.209 13 C 0.090 3.910 14 C -0.524 4.524 15 H 0.074 0.926 16 C 0.041 3.959 17 N -0.795 5.795 18 Si 1.063 2.937 19 H -0.274 1.274 20 H -0.275 1.275 21 H -0.276 1.276 22 N -0.582 5.582 23 C 0.112 3.888 24 C -0.134 4.134 25 C -0.125 4.125 26 C -0.134 4.134 27 C 0.516 3.484 28 O -0.558 6.558 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.401 0.599 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.107 0.893 39 H 0.300 0.700 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.098 0.902 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.518 4.755 11.662 16.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.059 3.941 3 H 0.108 0.892 4 C -0.205 4.205 5 C 0.289 3.711 6 O -0.423 6.423 7 N -0.280 5.280 8 C -0.084 4.084 9 C -0.093 4.093 10 C -0.262 4.262 11 C -0.112 4.112 12 C -0.229 4.229 13 C 0.086 3.914 14 C -0.553 4.553 15 H 0.092 0.908 16 C -0.181 4.181 17 N -0.418 5.418 18 Si 0.886 3.114 19 H -0.198 1.198 20 H -0.200 1.200 21 H -0.201 1.201 22 N -0.313 5.313 23 C -0.011 4.011 24 C -0.172 4.172 25 C -0.163 4.163 26 C -0.173 4.173 27 C 0.305 3.695 28 O -0.438 6.438 29 H 0.101 0.899 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.137 0.863 34 H 0.236 0.764 35 H 0.128 0.872 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.125 0.875 39 H 0.114 0.886 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.100 0.900 43 H 0.085 0.915 44 H 0.093 0.907 45 H 0.091 0.909 46 H 0.116 0.884 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.079 3.523 10.975 15.312 hybrid contribution -0.373 1.261 0.532 1.419 sum -10.451 4.784 11.507 16.265 Atomic orbital electron populations 1.22215 0.94624 1.04315 1.01543 1.20741 0.93720 0.96076 0.83572 0.89174 1.22216 0.92935 1.06147 0.99240 1.20574 0.89611 0.79477 0.81389 1.90531 1.70096 1.42705 1.38954 1.42892 1.05940 1.56279 1.22936 1.17619 0.81112 0.95704 1.13996 1.20661 0.93747 0.96194 0.98690 1.20238 0.93541 1.00239 1.12223 1.20381 0.97501 0.94712 0.98591 1.20740 0.93842 0.99259 1.09047 1.17500 0.91737 0.90143 0.92064 1.20339 1.04042 1.09558 1.21314 0.90804 1.26958 0.92805 1.06578 0.91745 1.70471 1.23422 1.18347 1.29566 0.83663 0.76952 0.73173 0.77575 1.19840 1.20048 1.20097 1.47172 1.49912 1.11224 1.22989 1.21523 0.97048 0.94267 0.88232 1.21883 1.02362 0.96160 0.96786 1.21650 0.98470 0.95196 1.00935 1.21638 0.99949 1.00027 0.95733 1.20057 0.79601 0.81632 0.88230 1.90591 1.40412 1.69547 1.43251 0.89911 0.92823 0.91820 0.88836 0.86271 0.76374 0.87208 0.89179 0.89314 0.87465 0.88636 0.89240 0.91421 0.90010 0.91543 0.90707 0.90873 0.88384 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.94 9.08 37.16 0.34 -1.60 16 2 C 0.16 2.17 2.20 -67.93 -0.15 2.02 16 3 H 0.09 1.16 7.60 -51.93 -0.39 0.77 16 4 C -0.16 -2.49 5.01 -27.88 -0.14 -2.63 16 5 C 0.50 9.50 7.53 -10.98 -0.08 9.42 16 6 O -0.54 -11.10 10.63 5.56 0.06 -11.04 16 7 N -0.64 -13.34 4.90 -9.48 -0.05 -13.39 16 8 C 0.01 0.23 6.33 -83.17 -0.53 -0.30 16 9 C -0.07 -1.73 8.69 -39.44 -0.34 -2.07 16 10 C -0.24 -5.59 10.04 -39.36 -0.39 -5.98 16 11 C -0.09 -2.18 9.97 -39.99 -0.40 -2.58 16 12 C -0.21 -5.33 7.87 -39.28 -0.31 -5.64 16 13 C 0.09 2.33 5.32 -106.65 -0.57 1.76 16 14 C -0.52 -13.41 8.35 -37.86 -0.32 -13.73 16 15 H 0.07 1.84 7.39 -52.49 -0.39 1.46 16 16 C 0.04 1.02 4.95 -17.33 -0.09 0.94 16 17 N -0.79 -20.61 12.32 55.55 0.68 -19.92 16 18 Si 1.06 21.37 30.00 -169.99 -5.10 16.27 16 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.04 16 21 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 22 N -0.58 -7.94 2.24 -167.38 -0.37 -8.31 16 23 C 0.11 1.33 5.76 -4.49 -0.03 1.31 16 24 C -0.13 -1.25 6.02 -26.59 -0.16 -1.41 16 25 C -0.12 -1.28 6.04 -26.51 -0.16 -1.44 16 26 C -0.13 -1.54 6.03 -28.11 -0.17 -1.71 16 27 C 0.52 7.58 6.88 -11.88 -0.08 7.50 16 28 O -0.56 -9.64 12.45 5.56 0.07 -9.57 16 29 H 0.08 1.12 5.98 -51.93 -0.31 0.81 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.12 2.01 5.75 -51.93 -0.30 1.71 16 34 H 0.40 7.82 7.95 -40.82 -0.32 7.50 16 35 H 0.11 2.54 6.20 -52.49 -0.33 2.22 16 36 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 37 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 38 H 0.11 2.80 6.45 -52.49 -0.34 2.47 16 39 H 0.30 7.99 6.62 -40.82 -0.27 7.72 16 40 H 0.09 1.33 6.32 -51.93 -0.33 1.00 16 41 H 0.07 0.69 8.03 -51.93 -0.42 0.27 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.07 0.55 8.12 -51.93 -0.42 0.12 16 44 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 45 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 47 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 367.56 15.07 5.54 5.54 Total: -1.00 -29.84 367.56 -9.58 -39.42 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: -6.84 Total: 17.14 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: -3.57 Total: -16.14 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: 0.26 Total: -41.62 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.13 Total: -20.61 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.10 Total: 16.27 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -29.84 -9.58 -39.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344338691.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.477 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds