Wall clock time and date at job start Tue Mar 31 2020 15:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46912 * 2 1 4 4 C 1.53004 * 109.47278 * 240.00016 * 2 1 3 5 5 C 1.50693 * 109.47130 * 174.99608 * 4 2 1 6 6 O 1.21281 * 120.00369 * 0.02562 * 5 4 2 7 7 N 1.34786 * 120.00039 * 179.97438 * 5 4 2 8 8 C 1.39120 * 119.99860 * 184.37270 * 7 5 4 9 9 C 1.38647 * 120.28887 * 325.34680 * 8 7 5 10 10 C 1.38223 * 120.03661 * 180.26219 * 9 8 7 11 11 C 1.38864 * 120.61570 * 359.73851 * 10 9 8 12 12 C 1.36475 * 120.57506 * 0.02562 * 11 10 9 13 13 C 1.40732 * 119.94463 * 359.97438 * 12 11 10 14 14 C 1.41067 * 120.30097 * 179.97438 * 13 12 11 15 15 H 1.08001 * 120.00158 * 154.83018 * 14 13 12 16 16 C 1.39960 * 120.00035 * 334.81866 * 14 13 12 17 17 N 1.30850 * 120.00172 * 334.82627 * 16 14 13 18 18 Si 1.86797 * 119.99964 * 154.81633 * 16 14 13 19 19 H 1.48493 * 109.47433 * 180.02562 * 18 16 14 20 20 H 1.48507 * 109.47399 * 300.00688 * 18 16 14 21 21 H 1.48501 * 109.47019 * 60.00183 * 18 16 14 22 22 N 1.46499 * 109.47057 * 120.00357 * 2 1 3 23 23 C 1.45752 * 117.94470 * 239.99799 * 22 2 1 24 24 C 1.52919 * 110.48895 * 160.92176 * 23 22 2 25 25 C 1.53348 * 108.67135 * 50.75793 * 24 23 22 26 26 C 1.53075 * 108.42479 * 292.46780 * 25 24 23 27 27 C 1.33353 * 117.94944 * 59.74005 * 22 2 1 28 28 O 1.21281 * 118.24149 * 2.21819 * 27 22 2 29 29 H 1.08995 * 109.46991 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46953 * 299.99924 * 1 2 3 31 31 H 1.09005 * 109.46883 * 59.99869 * 1 2 3 32 32 H 1.09004 * 109.46955 * 54.99873 * 4 2 1 33 33 H 1.08999 * 109.47357 * 295.00264 * 4 2 1 34 34 H 0.96996 * 119.99503 * 4.37567 * 7 5 4 35 35 H 1.08002 * 119.97971 * 359.97438 * 9 8 7 36 36 H 1.07995 * 119.69606 * 179.76870 * 10 9 8 37 37 H 1.07997 * 119.71651 * 180.02562 * 11 10 9 38 38 H 1.08000 * 120.02277 * 180.02562 * 12 11 10 39 39 H 0.97005 * 119.99936 * 354.62807 * 17 16 14 40 40 H 1.08998 * 109.30507 * 281.23769 * 23 22 2 41 41 H 1.09005 * 109.29993 * 40.61520 * 23 22 2 42 42 H 1.09006 * 109.60709 * 170.50722 * 24 23 22 43 43 H 1.08992 * 109.60986 * 291.00184 * 24 23 22 44 44 H 1.08997 * 109.67602 * 52.20057 * 25 24 23 45 45 H 1.08996 * 109.67358 * 172.73654 * 25 24 23 46 46 H 1.08997 * 109.39885 * 169.03021 * 26 25 24 47 47 H 1.08995 * 109.39839 * 288.85829 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2493 5 6 3.5419 -0.6148 -1.3128 6 8 4.1451 -0.0210 -0.4441 7 7 4.2150 -1.1804 -2.3344 8 6 5.6060 -1.1612 -2.3462 9 6 6.2947 -0.0741 -1.8303 10 6 7.6767 -0.0580 -1.8497 11 6 8.3891 -1.1266 -2.3780 12 6 7.7368 -2.2114 -2.8880 13 6 6.3301 -2.2529 -2.8804 14 6 5.6481 -3.3703 -3.4061 15 1 4.6532 -3.6079 -3.0595 16 6 6.2607 -4.1708 -4.3771 17 7 7.1915 -3.6683 -5.1473 18 14 5.7497 -5.9568 -4.5732 19 1 6.5433 -6.5821 -5.6614 20 1 5.9942 -6.6842 -3.3018 21 1 4.3054 -6.0240 -4.9119 22 7 2.0183 -0.6907 1.1961 23 6 2.8530 0.0602 2.1255 24 6 2.8768 -0.6213 3.4942 25 6 3.2232 -2.1024 3.2992 26 6 2.0608 -2.7789 2.5681 27 6 1.6670 -1.9654 1.3690 28 8 0.9974 -2.4978 0.5093 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6054 -0.2617 -2.1370 33 1 1.7517 -1.7715 -1.2057 34 1 3.7295 -1.6008 -3.0613 35 1 5.7510 0.7627 -1.4174 36 1 8.2075 0.7932 -1.4498 37 1 9.4687 -1.0989 -2.3853 38 1 8.2997 -3.0377 -3.2963 39 1 7.4026 -2.7227 -5.0992 40 1 3.8684 0.1164 1.7333 41 1 2.4551 1.0694 2.2325 42 1 3.6305 -0.1495 4.1248 43 1 1.8970 -0.5337 3.9636 44 1 4.1323 -2.1914 2.7045 45 1 3.3712 -2.5755 4.2699 46 1 2.3651 -3.7756 2.2487 47 1 1.2074 -2.8592 3.2413 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344338691.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:57 Heat of formation + Delta-G solvation = -78.499041 kcal Electronic energy + Delta-G solvation = -29388.910546 eV Core-core repulsion = 25534.934801 eV Total energy + Delta-G solvation = -3853.975745 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.99660 -40.92841 -39.15462 -37.40498 -36.32121 -35.76784 -35.41334 -32.42851 -31.25142 -30.70780 -30.40735 -28.67748 -26.92374 -25.39000 -24.43561 -23.46016 -22.83506 -21.93167 -21.07866 -19.87327 -19.28515 -18.37833 -17.99798 -17.69325 -16.88305 -16.74958 -16.53931 -16.22287 -15.76299 -15.52773 -15.26155 -15.17142 -15.11484 -14.60601 -14.51093 -14.20464 -14.12021 -14.03271 -13.86690 -13.38686 -13.13691 -12.97923 -12.79156 -12.73322 -12.63773 -12.46699 -12.30376 -12.12899 -11.99023 -11.86860 -11.81178 -11.72495 -11.49513 -11.06587 -10.81676 -10.48150 -10.36172 -9.61380 -9.55037 -9.31820 -8.80362 -6.43103 0.77215 0.91190 1.49380 1.61487 1.65339 1.77444 1.79440 2.10899 2.29871 2.43399 2.67553 3.53076 3.58212 3.76657 3.83357 3.89105 3.91327 3.99097 4.22993 4.32662 4.39528 4.42682 4.47086 4.52852 4.59642 4.67682 4.69769 4.77570 4.79589 4.89649 4.93223 4.97145 4.99420 5.06754 5.07718 5.11115 5.29731 5.31777 5.37274 5.48188 5.65482 5.67987 5.76900 5.92700 6.03392 6.12909 6.35327 6.60395 6.62674 6.87636 6.89789 7.21680 7.38825 8.03303 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012220 B = 0.004025 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2290.830701 B = 6954.694575 C = 7697.420223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.158 3.842 3 H 0.097 0.903 4 C -0.155 4.155 5 C 0.499 3.501 6 O -0.557 6.557 7 N -0.645 5.645 8 C 0.006 3.994 9 C -0.085 4.085 10 C -0.237 4.237 11 C -0.098 4.098 12 C -0.227 4.227 13 C 0.061 3.939 14 C -0.546 4.546 15 H 0.071 0.929 16 C 0.009 3.991 17 N -0.814 5.814 18 Si 1.111 2.889 19 H -0.270 1.270 20 H -0.271 1.271 21 H -0.257 1.257 22 N -0.583 5.583 23 C 0.109 3.891 24 C -0.126 4.126 25 C -0.121 4.121 26 C -0.133 4.133 27 C 0.503 3.497 28 O -0.591 6.591 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.104 0.896 34 H 0.406 0.594 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.285 0.715 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.087 0.913 44 H 0.043 0.957 45 H 0.100 0.900 46 H 0.088 0.912 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.791 5.462 13.314 18.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.054 3.946 3 H 0.115 0.885 4 C -0.195 4.195 5 C 0.289 3.711 6 O -0.436 6.436 7 N -0.287 5.287 8 C -0.088 4.088 9 C -0.105 4.105 10 C -0.257 4.257 11 C -0.117 4.117 12 C -0.247 4.247 13 C 0.057 3.943 14 C -0.574 4.574 15 H 0.089 0.911 16 C -0.208 4.208 17 N -0.437 5.437 18 Si 0.929 3.071 19 H -0.195 1.195 20 H -0.196 1.196 21 H -0.181 1.181 22 N -0.313 5.313 23 C -0.013 4.013 24 C -0.164 4.164 25 C -0.159 4.159 26 C -0.172 4.172 27 C 0.293 3.707 28 O -0.474 6.474 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.139 0.861 33 H 0.122 0.878 34 H 0.241 0.759 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.074 0.926 41 H 0.106 0.894 42 H 0.117 0.883 43 H 0.105 0.895 44 H 0.062 0.938 45 H 0.119 0.881 46 H 0.107 0.893 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.359 4.270 12.649 17.528 hybrid contribution 0.053 1.184 0.088 1.189 sum -11.306 5.454 12.737 17.883 Atomic orbital electron populations 1.22106 0.92792 1.03401 1.03223 1.20890 0.95091 0.95947 0.82705 0.88474 1.22215 0.89750 1.05812 1.01720 1.21286 0.91139 0.78308 0.80374 1.90527 1.70867 1.43094 1.39119 1.42996 1.04858 1.56957 1.23930 1.17840 0.82802 0.95279 1.12881 1.20853 0.94349 0.96260 0.99085 1.20611 0.93494 1.00739 1.10854 1.20653 0.98985 0.94108 0.97935 1.20763 0.93961 0.99837 1.10155 1.17827 0.92361 0.91019 0.93095 1.20458 1.04303 1.10486 1.22197 0.91070 1.28244 0.91998 1.09778 0.90788 1.70576 1.24878 1.17429 1.30796 0.83060 0.77663 0.68686 0.77695 1.19481 1.19565 1.18116 1.47324 1.49554 1.11214 1.23252 1.21602 0.94999 0.95585 0.89129 1.21882 1.04086 0.94988 0.95415 1.21630 0.96443 0.96313 1.01474 1.21684 1.01404 0.99026 0.95098 1.20673 0.79196 0.82015 0.88829 1.90575 1.41986 1.70238 1.44577 0.91997 0.91372 0.89927 0.86097 0.87805 0.75892 0.86675 0.86326 0.86689 0.88927 0.90232 0.92605 0.89427 0.88260 0.89476 0.93826 0.88146 0.89318 0.86218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 9.08 71.98 0.65 -2.63 16 2 C 0.16 3.99 2.20 44.99 0.10 4.08 16 3 H 0.10 2.32 7.60 -2.39 -0.02 2.30 16 4 C -0.15 -4.57 5.01 29.85 0.15 -4.42 16 5 C 0.50 18.92 7.53 87.65 0.66 19.58 16 6 O -0.56 -22.70 10.63 -3.03 -0.03 -22.74 16 7 N -0.64 -27.35 4.90 -302.28 -1.48 -28.83 16 8 C 0.01 0.32 6.33 38.88 0.25 0.56 16 9 C -0.09 -4.03 8.69 22.36 0.19 -3.84 16 10 C -0.24 -10.71 10.04 22.42 0.22 -10.48 16 11 C -0.10 -4.58 9.97 22.01 0.22 -4.36 16 12 C -0.23 -11.88 7.87 22.47 0.18 -11.70 16 13 C 0.06 3.26 5.32 -21.18 -0.11 3.15 16 14 C -0.55 -28.72 8.35 23.38 0.20 -28.53 16 15 H 0.07 3.66 7.39 -2.91 -0.02 3.64 16 16 C 0.01 0.45 4.95 85.26 0.42 0.88 16 17 N -0.81 -43.32 12.32 21.83 0.27 -43.05 16 18 Si 1.11 43.27 30.00 68.60 2.06 45.32 16 19 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 20 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 21 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 22 N -0.58 -15.31 2.24 -802.64 -1.79 -17.10 16 23 C 0.11 2.44 5.76 86.49 0.50 2.94 16 24 C -0.13 -2.02 6.02 30.68 0.18 -1.84 16 25 C -0.12 -2.29 6.04 30.74 0.19 -2.11 16 26 C -0.13 -2.90 6.03 29.70 0.18 -2.72 16 27 C 0.50 14.49 6.88 87.71 0.60 15.09 16 28 O -0.59 -20.49 12.45 -3.03 -0.04 -20.53 16 29 H 0.06 1.60 5.98 -2.39 -0.01 1.59 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.12 2.86 8.14 -2.38 -0.02 2.84 16 33 H 0.10 3.52 5.75 -2.39 -0.01 3.51 16 34 H 0.41 16.18 7.95 -92.71 -0.74 15.45 16 35 H 0.12 5.28 6.20 -2.91 -0.02 5.26 16 36 H 0.12 4.62 8.06 -2.91 -0.02 4.59 16 37 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 38 H 0.09 5.03 6.45 -2.91 -0.02 5.01 16 39 H 0.29 15.81 6.62 -92.70 -0.61 15.20 16 40 H 0.06 1.65 6.32 -2.39 -0.02 1.63 16 41 H 0.09 1.59 8.03 -2.38 -0.02 1.57 16 42 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 43 H 0.09 1.10 8.12 -2.39 -0.02 1.08 16 44 H 0.04 1.09 8.13 -2.39 -0.02 1.07 16 45 H 0.10 1.36 8.14 -2.39 -0.02 1.35 16 46 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -66.47 367.56 4.17 -62.30 By element: Atomic # 1 Polarization: 50.57 SS G_CDS: 0.41 Total: 50.98 kcal Atomic # 6 Polarization: -31.12 SS G_CDS: 4.78 Total: -26.34 kcal Atomic # 7 Polarization: -85.98 SS G_CDS: -3.01 Total: -88.99 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -0.07 Total: -43.27 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.06 Total: 45.32 kcal Total: -66.47 4.17 -62.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344338691.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.199 kcal (2) G-P(sol) polarization free energy of solvation -66.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds