Wall clock time and date at job start Tue Mar 31 2020 16:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47295 * 2 1 4 4 O 1.42904 * 109.47235 * 120.00227 * 2 1 3 5 5 C 1.35756 * 116.99873 * 275.11132 * 4 2 1 6 6 C 1.38966 * 119.90500 * 5.45567 * 5 4 2 7 7 C 1.37732 * 120.09724 * 179.97438 * 6 5 4 8 8 C 1.39761 * 119.90187 * 359.97438 * 7 6 5 9 9 C 1.43197 * 120.09360 * 179.97438 * 8 7 6 10 10 N 7.45472 * 97.61373 * 66.46219 * 2 1 3 11 11 C 1.39759 * 119.80875 * 0.26037 * 8 7 6 12 12 C 1.37729 * 119.90599 * 359.48181 * 11 8 7 13 13 C 1.50708 * 109.47091 * 240.00049 * 2 1 3 14 14 O 1.21279 * 120.00136 * 244.99753 * 13 2 1 15 15 N 1.34771 * 119.99963 * 65.00034 * 13 2 1 16 16 C 1.46505 * 120.00025 * 179.97438 * 15 13 2 17 17 C 1.52999 * 109.46743 * 179.97438 * 16 15 13 18 18 C 1.52994 * 109.47552 * 299.99824 * 17 16 15 19 19 C 1.52996 * 109.47226 * 60.00508 * 17 16 15 20 20 C 1.53003 * 109.46610 * 180.02562 * 17 16 15 21 21 C 1.50702 * 109.47134 * 179.97438 * 20 17 16 22 22 H 1.08006 * 119.99721 * 0.02562 * 21 20 17 23 23 C 1.37873 * 120.00216 * 179.97438 * 21 20 17 24 24 N 1.31512 * 120.00062 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00030 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47155 * 60.00597 * 25 23 21 27 27 H 1.48503 * 109.47228 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47697 * 300.00518 * 25 23 21 29 29 H 1.08995 * 109.46984 * 60.00145 * 1 2 3 30 30 H 1.09008 * 109.46966 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.46866 * 299.99907 * 1 2 3 32 32 H 1.07999 * 119.95331 * 359.95366 * 6 5 4 33 33 H 1.07995 * 120.05272 * 179.97438 * 7 6 5 34 34 H 1.08001 * 120.04483 * 179.74802 * 11 8 7 35 35 H 1.08000 * 119.95334 * 180.25550 * 12 11 8 36 36 H 0.97001 * 120.00089 * 359.97438 * 15 13 2 37 37 H 1.08999 * 109.46691 * 300.00016 * 16 15 13 38 38 H 1.08998 * 109.46717 * 60.00064 * 16 15 13 39 39 H 1.09004 * 109.46965 * 60.00226 * 18 17 16 40 40 H 1.09000 * 109.47294 * 180.02562 * 18 17 16 41 41 H 1.09004 * 109.47378 * 300.00256 * 18 17 16 42 42 H 1.08994 * 109.47651 * 59.99739 * 19 17 16 43 43 H 1.09000 * 109.47237 * 179.97438 * 19 17 16 44 44 H 1.09004 * 109.47111 * 299.99029 * 19 17 16 45 45 H 1.08998 * 109.47273 * 300.00197 * 20 17 16 46 46 H 1.09004 * 109.47191 * 60.00436 * 20 17 16 47 47 H 0.97003 * 120.00282 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.1102 0.0612 2.3035 6 6 1.6538 1.3736 2.3242 7 6 1.7567 2.1225 3.4755 8 6 2.3207 1.5606 4.6242 9 6 2.4302 2.3358 5.8232 10 7 2.5177 2.9508 6.7742 11 6 2.7830 0.2420 4.5974 12 6 2.6713 -0.5016 3.4435 13 6 2.0324 -0.7104 -1.2305 14 8 2.6530 -1.7467 -1.1216 15 7 1.7919 -0.1942 -2.4520 16 6 2.2808 -0.8845 -3.6482 17 6 1.8753 -0.0947 -4.8942 18 6 0.3504 0.0140 -4.9555 19 6 2.4844 1.3074 -4.8299 20 6 2.3853 -0.8159 -6.1435 21 6 1.9854 -0.0384 -7.3709 22 1 1.4240 0.8788 -7.2700 23 6 2.3370 -0.4972 -8.6226 24 7 3.0210 -1.6137 -8.7455 25 14 1.8408 0.4663 -10.1440 26 1 2.4309 1.8276 -10.0822 27 1 2.3358 -0.2337 -11.3566 28 1 0.3606 0.5708 -10.2030 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.2180 1.8070 1.4362 33 1 1.4021 3.1425 3.4907 34 1 3.2232 -0.1948 5.4817 35 1 3.0245 -1.5220 3.4232 36 1 1.2952 0.6344 -2.5392 37 1 3.3671 -0.9623 -3.6043 38 1 1.8465 -1.8832 -3.6942 39 1 -0.0133 0.5276 -4.0655 40 1 0.0616 0.5763 -5.8435 41 1 -0.0835 -0.9849 -5.0014 42 1 3.5707 1.2300 -4.7864 43 1 2.1959 1.8699 -5.7178 44 1 2.1206 1.8211 -3.9400 45 1 3.4716 -0.8938 -6.1001 46 1 1.9509 -1.8147 -6.1892 47 1 3.2681 -1.9368 -9.6261 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345911011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:45 Heat of formation + Delta-G solvation = -34.377791 kcal Electronic energy + Delta-G solvation = -27054.387448 eV Core-core repulsion = 23202.324943 eV Total energy + Delta-G solvation = -3852.062504 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.08284 -39.70673 -38.30434 -37.11747 -36.44307 -33.92610 -32.72549 -32.00195 -31.42556 -30.57134 -27.23671 -26.61105 -26.53361 -25.10759 -23.67593 -23.52379 -22.53903 -20.39017 -19.43885 -18.76619 -18.47149 -17.29524 -16.37704 -16.22920 -16.10366 -15.51230 -15.15221 -14.98693 -14.60989 -14.43020 -14.30486 -14.19193 -13.99827 -13.71728 -13.52271 -13.21892 -13.16392 -12.87480 -12.83465 -12.67685 -12.50483 -12.22559 -12.14361 -12.09945 -11.46221 -11.30972 -11.22354 -11.06785 -10.92438 -10.70262 -10.49517 -10.33609 -9.96266 -9.89088 -9.64696 -9.25563 -9.00574 -8.91435 -8.71403 -8.40632 -6.04658 -4.06519 0.36375 0.76838 2.29185 2.30496 2.50397 2.55725 3.28281 3.34352 3.34551 3.39565 3.40877 3.52847 4.13777 4.28276 4.33940 4.40579 4.47568 4.55524 4.60912 4.86888 4.99392 5.14241 5.18164 5.30616 5.39163 5.41068 5.51429 5.52250 5.64098 5.66522 5.71881 5.81046 6.04560 6.05726 6.11019 6.17249 6.28394 6.40134 6.53952 6.62884 6.82794 6.96694 6.99073 7.03613 7.12328 7.50958 7.57884 7.69293 7.93147 8.18398 8.34651 8.97895 9.56899 11.06596 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.030687 B = 0.001867 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.216156 B =14993.537177 C =15335.271275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.063 3.937 3 H 0.101 0.899 4 O -0.277 6.277 5 C 0.167 3.833 6 C -0.217 4.217 7 C -0.025 4.025 8 C -0.077 4.077 9 C 0.260 3.740 10 N -0.427 5.427 11 C -0.027 4.027 12 C -0.151 4.151 13 C 0.511 3.489 14 O -0.520 6.520 15 N -0.715 5.715 16 C 0.129 3.871 17 C -0.073 4.073 18 C -0.127 4.127 19 C -0.128 4.128 20 C 0.036 3.964 21 C -0.514 4.514 22 H 0.059 0.941 23 C 0.057 3.943 24 N -0.893 5.893 25 Si 0.889 3.111 26 H -0.278 1.278 27 H -0.288 1.288 28 H -0.278 1.278 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.142 0.858 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.399 0.601 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.028 0.972 40 H 0.068 0.932 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.068 0.932 44 H 0.028 0.972 45 H 0.019 0.981 46 H 0.019 0.981 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.241 6.241 22.251 23.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.003 3.997 3 H 0.119 0.881 4 O -0.188 6.188 5 C 0.120 3.880 6 C -0.236 4.236 7 C -0.045 4.045 8 C -0.081 4.081 9 C -0.055 4.055 10 N -0.102 5.102 11 C -0.048 4.048 12 C -0.170 4.170 13 C 0.295 3.705 14 O -0.395 6.395 15 N -0.368 5.368 16 C 0.007 3.993 17 C -0.073 4.073 18 C -0.185 4.185 19 C -0.185 4.185 20 C -0.001 4.001 21 C -0.552 4.552 22 H 0.077 0.923 23 C -0.144 4.144 24 N -0.533 5.533 25 Si 0.718 3.282 26 H -0.203 1.203 27 H -0.214 1.214 28 H -0.203 1.203 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.160 0.840 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.234 0.766 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.047 0.953 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.047 0.953 45 H 0.037 0.963 46 H 0.037 0.963 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -4.520 6.089 23.605 24.793 hybrid contribution -0.566 0.827 -1.475 1.783 sum -5.086 6.916 22.130 23.737 Atomic orbital electron populations 1.22358 0.92223 1.04868 1.04053 1.22367 0.96046 0.97168 0.84091 0.88134 1.86238 1.79836 1.36991 1.15697 1.19401 0.91923 0.89944 0.86772 1.21278 1.07800 0.94275 1.00235 1.20946 0.93775 0.99494 0.90335 1.15912 1.09481 0.93709 0.89017 1.25651 0.93480 0.93415 0.92913 1.81272 1.09223 1.08876 1.10869 1.20982 0.94693 0.91368 0.97745 1.20411 1.03991 1.02027 0.90533 1.19913 0.80709 0.85797 0.84106 1.90759 1.39437 1.22954 1.86315 1.46086 1.57358 1.27842 1.05506 1.21706 0.99238 0.95988 0.82397 1.20922 0.95694 0.95713 0.94990 1.21770 0.95106 1.01340 1.00248 1.21771 1.00263 0.96249 1.00220 1.19088 0.96383 0.95264 0.89379 1.21127 1.35039 1.08375 0.90655 0.92306 1.25010 0.95293 0.95056 0.99088 1.69948 1.38613 1.21066 1.23624 0.86704 0.78825 0.80081 0.82634 1.20335 1.21387 1.20333 0.89839 0.90323 0.90529 0.84040 0.84610 0.84208 0.83728 0.76559 0.91517 0.91496 0.95308 0.91330 0.93264 0.93273 0.91321 0.95307 0.96297 0.96286 0.92933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.15 9.12 37.16 0.34 -0.81 16 2 C 0.06 0.56 2.63 -27.88 -0.07 0.48 16 3 H 0.10 0.62 6.30 -51.93 -0.33 0.29 16 4 O -0.28 -2.90 9.33 -38.84 -0.36 -3.26 16 5 C 0.17 1.34 6.61 -39.04 -0.26 1.08 16 6 C -0.22 -1.29 8.21 -39.50 -0.32 -1.61 16 7 C -0.02 -0.14 9.75 -39.20 -0.38 -0.52 16 8 C -0.08 -0.50 5.74 -106.83 -0.61 -1.11 16 9 C 0.26 2.19 15.33 -22.48 -0.34 1.84 16 10 N -0.43 -4.67 18.54 41.83 0.78 -3.89 16 11 C -0.03 -0.16 9.75 -39.20 -0.38 -0.54 16 12 C -0.15 -1.05 9.97 -39.50 -0.39 -1.44 16 13 C 0.51 6.68 7.18 -10.98 -0.08 6.60 16 14 O -0.52 -9.28 16.51 -14.30 -0.24 -9.52 16 15 N -0.71 -8.75 4.92 -60.29 -0.30 -9.05 16 16 C 0.13 2.06 4.56 -4.04 -0.02 2.04 16 17 C -0.07 -1.26 0.54 -154.51 -0.08 -1.35 16 18 C -0.13 -2.01 8.05 37.15 0.30 -1.71 16 19 C -0.13 -2.03 8.05 37.16 0.30 -1.73 16 20 C 0.04 0.85 4.04 -27.88 -0.11 0.73 16 21 C -0.51 -13.09 7.65 -34.44 -0.26 -13.35 16 22 H 0.06 1.43 5.68 -52.48 -0.30 1.13 16 23 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 24 N -0.89 -25.70 13.29 55.43 0.74 -24.97 16 25 Si 0.89 20.59 29.54 -169.99 -5.02 15.57 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H 0.08 0.42 7.92 -51.93 -0.41 0.01 16 30 H 0.08 0.62 8.14 -51.92 -0.42 0.19 16 31 H 0.08 0.37 6.89 -51.93 -0.36 0.01 16 32 H 0.14 0.57 5.40 -52.49 -0.28 0.29 16 33 H 0.14 0.49 8.06 -52.49 -0.42 0.07 16 34 H 0.14 0.54 8.06 -52.49 -0.42 0.11 16 35 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.40 3.79 5.95 -40.82 -0.24 3.55 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 39 H 0.03 0.35 6.86 -51.93 -0.36 -0.01 16 40 H 0.07 1.19 6.62 -51.93 -0.34 0.85 16 41 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 1.20 6.62 -51.93 -0.34 0.85 16 44 H 0.03 0.35 6.86 -51.93 -0.36 -0.01 16 45 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -32.64 390.64 -7.69 -40.33 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.68 Total: -1.15 kcal Atomic # 6 Polarization: -7.46 SS G_CDS: -2.49 Total: -9.95 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 1.22 Total: -37.90 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: -0.60 Total: -12.78 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.64 -7.69 -40.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345911011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.949 kcal (2) G-P(sol) polarization free energy of solvation -32.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds