Wall clock time and date at job start Tue Mar 31 2020 16:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47295 * 2 1 4 4 O 1.42904 * 109.47235 * 120.00227 * 2 1 3 5 5 C 1.35756 * 116.99873 * 275.11132 * 4 2 1 6 6 C 1.38966 * 119.90500 * 5.45567 * 5 4 2 7 7 C 1.37732 * 120.09724 * 179.97438 * 6 5 4 8 8 C 1.39761 * 119.90187 * 359.97438 * 7 6 5 9 9 C 1.43197 * 120.09360 * 179.97438 * 8 7 6 10 10 N 7.45472 * 97.61373 * 66.46219 * 2 1 3 11 11 C 1.39759 * 119.80875 * 0.26037 * 8 7 6 12 12 C 1.37729 * 119.90599 * 359.48181 * 11 8 7 13 13 C 1.50708 * 109.47091 * 240.00049 * 2 1 3 14 14 O 1.21279 * 120.00136 * 244.99753 * 13 2 1 15 15 N 1.34771 * 119.99963 * 65.00034 * 13 2 1 16 16 C 1.46505 * 120.00025 * 179.97438 * 15 13 2 17 17 C 1.52999 * 109.46743 * 179.97438 * 16 15 13 18 18 C 1.52994 * 109.47552 * 299.99824 * 17 16 15 19 19 C 1.52996 * 109.47226 * 60.00508 * 17 16 15 20 20 C 1.53003 * 109.46610 * 180.02562 * 17 16 15 21 21 C 1.50702 * 109.47134 * 179.97438 * 20 17 16 22 22 H 1.08006 * 119.99721 * 0.02562 * 21 20 17 23 23 C 1.37873 * 120.00216 * 179.97438 * 21 20 17 24 24 N 1.31512 * 120.00062 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00030 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.47155 * 60.00597 * 25 23 21 27 27 H 1.48503 * 109.47228 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47697 * 300.00518 * 25 23 21 29 29 H 1.08995 * 109.46984 * 60.00145 * 1 2 3 30 30 H 1.09008 * 109.46966 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.46866 * 299.99907 * 1 2 3 32 32 H 1.07999 * 119.95331 * 359.95366 * 6 5 4 33 33 H 1.07995 * 120.05272 * 179.97438 * 7 6 5 34 34 H 1.08001 * 120.04483 * 179.74802 * 11 8 7 35 35 H 1.08000 * 119.95334 * 180.25550 * 12 11 8 36 36 H 0.97001 * 120.00089 * 359.97438 * 15 13 2 37 37 H 1.08999 * 109.46691 * 300.00016 * 16 15 13 38 38 H 1.08998 * 109.46717 * 60.00064 * 16 15 13 39 39 H 1.09004 * 109.46965 * 60.00226 * 18 17 16 40 40 H 1.09000 * 109.47294 * 180.02562 * 18 17 16 41 41 H 1.09004 * 109.47378 * 300.00256 * 18 17 16 42 42 H 1.08994 * 109.47651 * 59.99739 * 19 17 16 43 43 H 1.09000 * 109.47237 * 179.97438 * 19 17 16 44 44 H 1.09004 * 109.47111 * 299.99029 * 19 17 16 45 45 H 1.08998 * 109.47273 * 300.00197 * 20 17 16 46 46 H 1.09004 * 109.47191 * 60.00436 * 20 17 16 47 47 H 0.97003 * 120.00282 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.1102 0.0612 2.3035 6 6 1.6538 1.3736 2.3242 7 6 1.7567 2.1225 3.4755 8 6 2.3207 1.5606 4.6242 9 6 2.4302 2.3358 5.8232 10 7 2.5177 2.9508 6.7742 11 6 2.7830 0.2420 4.5974 12 6 2.6713 -0.5016 3.4435 13 6 2.0324 -0.7104 -1.2305 14 8 2.6530 -1.7467 -1.1216 15 7 1.7919 -0.1942 -2.4520 16 6 2.2808 -0.8845 -3.6482 17 6 1.8753 -0.0947 -4.8942 18 6 0.3504 0.0140 -4.9555 19 6 2.4844 1.3074 -4.8299 20 6 2.3853 -0.8159 -6.1435 21 6 1.9854 -0.0384 -7.3709 22 1 1.4240 0.8788 -7.2700 23 6 2.3370 -0.4972 -8.6226 24 7 3.0210 -1.6137 -8.7455 25 14 1.8408 0.4663 -10.1440 26 1 2.4309 1.8276 -10.0822 27 1 2.3358 -0.2337 -11.3566 28 1 0.3606 0.5708 -10.2030 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.2180 1.8070 1.4362 33 1 1.4021 3.1425 3.4907 34 1 3.2232 -0.1948 5.4817 35 1 3.0245 -1.5220 3.4232 36 1 1.2952 0.6344 -2.5392 37 1 3.3671 -0.9623 -3.6043 38 1 1.8465 -1.8832 -3.6942 39 1 -0.0133 0.5276 -4.0655 40 1 0.0616 0.5763 -5.8435 41 1 -0.0835 -0.9849 -5.0014 42 1 3.5707 1.2300 -4.7864 43 1 2.1959 1.8699 -5.7178 44 1 2.1206 1.8211 -3.9400 45 1 3.4716 -0.8938 -6.1001 46 1 1.9509 -1.8147 -6.1892 47 1 3.2681 -1.9368 -9.6261 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345911011.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:44 Heat of formation + Delta-G solvation = -53.244943 kcal Electronic energy + Delta-G solvation = -27055.205589 eV Core-core repulsion = 23202.324943 eV Total energy + Delta-G solvation = -3852.880645 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.77036 -40.63421 -39.09591 -38.40163 -37.14742 -35.32578 -34.15657 -33.00818 -31.94385 -31.14045 -29.07705 -27.91057 -27.74227 -25.89457 -24.89683 -24.13262 -23.62505 -21.41008 -20.05249 -19.85210 -19.22705 -18.39584 -18.24255 -17.12151 -16.85272 -16.50988 -16.30134 -16.02223 -15.70103 -15.22492 -15.14242 -15.02354 -14.85045 -14.70933 -14.52338 -14.33072 -14.14051 -13.89849 -13.83585 -13.75512 -13.42753 -13.18173 -13.01898 -12.81297 -12.76788 -12.71814 -12.54385 -12.28331 -12.19702 -12.02432 -11.98217 -11.78905 -11.49731 -11.11956 -10.86766 -10.72316 -10.48378 -10.10800 -10.07895 -9.27349 -8.11723 -6.19483 -0.16004 0.34143 1.44687 1.46375 1.52435 1.53212 1.55278 1.66101 1.94511 2.45384 2.57318 2.89048 2.94164 3.22930 3.51795 3.74165 3.84952 3.89415 3.95154 4.00482 4.12182 4.16290 4.26174 4.43327 4.55754 4.70602 4.71450 4.74575 4.76202 4.83176 5.00970 5.01459 5.04723 5.13228 5.17599 5.22249 5.24761 5.35548 5.39466 5.48153 5.55501 5.57682 5.59496 5.60656 5.84560 5.92817 6.25672 6.32879 6.50071 6.55741 6.96104 7.20222 7.48433 9.00375 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.030687 B = 0.001867 C = 0.001825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.216156 B =14993.537177 C =15335.271275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.069 3.931 3 H 0.137 0.863 4 O -0.307 6.307 5 C 0.151 3.849 6 C -0.211 4.211 7 C -0.017 4.017 8 C -0.085 4.085 9 C 0.285 3.715 10 N -0.476 5.476 11 C -0.020 4.020 12 C -0.163 4.163 13 C 0.508 3.492 14 O -0.576 6.576 15 N -0.698 5.698 16 C 0.142 3.858 17 C -0.064 4.064 18 C -0.123 4.123 19 C -0.123 4.123 20 C 0.038 3.962 21 C -0.513 4.513 22 H 0.075 0.925 23 C -0.006 4.006 24 N -0.939 5.939 25 Si 0.958 3.042 26 H -0.266 1.266 27 H -0.294 1.294 28 H -0.266 1.266 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.100 0.900 32 H 0.167 0.833 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.143 0.857 36 H 0.417 0.583 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.076 0.924 40 H 0.055 0.945 41 H 0.036 0.964 42 H 0.035 0.965 43 H 0.055 0.945 44 H 0.076 0.924 45 H -0.015 1.015 46 H -0.015 1.015 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.250 9.440 23.259 26.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.010 3.990 3 H 0.154 0.846 4 O -0.219 6.219 5 C 0.104 3.896 6 C -0.229 4.229 7 C -0.037 4.037 8 C -0.089 4.089 9 C -0.029 4.029 10 N -0.152 5.152 11 C -0.041 4.041 12 C -0.182 4.182 13 C 0.294 3.706 14 O -0.455 6.455 15 N -0.353 5.353 16 C 0.018 3.982 17 C -0.065 4.065 18 C -0.180 4.180 19 C -0.181 4.181 20 C 0.001 3.999 21 C -0.551 4.551 22 H 0.093 0.907 23 C -0.203 4.203 24 N -0.580 5.580 25 Si 0.783 3.217 26 H -0.191 1.191 27 H -0.220 1.220 28 H -0.191 1.191 29 H 0.123 0.877 30 H 0.078 0.922 31 H 0.118 0.882 32 H 0.185 0.815 33 H 0.177 0.823 34 H 0.173 0.827 35 H 0.161 0.839 36 H 0.257 0.743 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.095 0.905 45 H 0.003 0.997 46 H 0.003 0.997 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.565 9.344 24.632 27.151 hybrid contribution 0.095 -0.239 -1.741 1.759 sum -6.470 9.106 22.892 25.471 Atomic orbital electron populations 1.22406 0.90027 1.04402 1.06300 1.22430 0.97412 0.97557 0.81567 0.84593 1.86199 1.80584 1.38458 1.16663 1.19636 0.92910 0.90896 0.86166 1.21481 1.07096 0.93158 1.01194 1.21202 0.92575 1.00414 0.89501 1.16018 1.10374 0.93779 0.88753 1.25850 0.92031 0.92414 0.92560 1.81300 1.11089 1.10519 1.12326 1.21111 0.93996 0.91064 0.97904 1.20520 1.04465 1.02304 0.90903 1.20786 0.79354 0.85121 0.85309 1.90739 1.41966 1.25657 1.87161 1.45784 1.57111 1.28095 1.04279 1.21235 0.97954 0.95347 0.83650 1.20710 0.97135 0.96124 0.92513 1.21715 0.93227 1.01098 1.01964 1.21718 0.99502 0.94947 1.01890 1.18985 0.94137 0.94336 0.92473 1.21581 1.33821 1.08545 0.91160 0.90735 1.25949 0.95577 0.96041 1.02721 1.70117 1.40616 1.23173 1.24073 0.85608 0.78928 0.78790 0.78349 1.19135 1.21994 1.19103 0.87664 0.92226 0.88152 0.81540 0.82286 0.82654 0.83921 0.74346 0.93563 0.93511 0.90483 0.92636 0.94514 0.94563 0.92613 0.90532 0.99711 0.99662 0.93276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.57 9.12 71.98 0.66 -0.91 16 2 C 0.07 1.01 2.63 29.85 0.08 1.09 16 3 H 0.14 1.00 6.30 -2.39 -0.02 0.98 16 4 O -0.31 -5.94 9.33 -71.83 -0.67 -6.61 16 5 C 0.15 2.07 6.61 22.62 0.15 2.22 16 6 C -0.21 -1.67 8.21 22.32 0.18 -1.48 16 7 C -0.02 -0.12 9.75 22.52 0.22 0.10 16 8 C -0.09 -0.90 5.74 -21.30 -0.12 -1.02 16 9 C 0.29 4.32 15.33 88.33 1.35 5.67 16 10 N -0.48 -9.98 18.54 19.00 0.35 -9.63 16 11 C -0.02 -0.20 9.75 22.52 0.22 0.02 16 12 C -0.16 -2.06 9.97 22.32 0.22 -1.83 16 13 C 0.51 12.56 7.18 87.66 0.63 13.19 16 14 O -0.58 -21.02 16.51 15.96 0.26 -20.76 16 15 N -0.70 -15.55 4.92 -463.05 -2.28 -17.82 16 16 C 0.14 4.58 4.56 86.38 0.39 4.97 16 17 C -0.06 -2.20 0.54 -52.18 -0.03 -2.23 16 18 C -0.12 -3.61 8.05 71.98 0.58 -3.03 16 19 C -0.12 -3.65 8.05 71.98 0.58 -3.07 16 20 C 0.04 1.86 4.04 29.85 0.12 1.98 16 21 C -0.51 -26.42 7.65 25.60 0.20 -26.23 16 22 H 0.07 3.54 5.68 -2.91 -0.02 3.52 16 23 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 24 N -0.94 -56.06 13.29 21.45 0.28 -55.77 16 25 Si 0.96 42.36 29.54 68.60 2.03 44.39 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 27 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 28 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 29 H 0.10 0.49 7.92 -2.39 -0.02 0.47 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.10 0.47 6.89 -2.39 -0.02 0.45 16 32 H 0.17 0.41 5.40 -2.91 -0.02 0.39 16 33 H 0.16 0.43 8.06 -2.91 -0.02 0.41 16 34 H 0.16 0.94 8.06 -2.91 -0.02 0.91 16 35 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 36 H 0.42 5.99 5.95 -92.71 -0.55 5.44 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.08 1.51 6.86 -2.39 -0.02 1.49 16 40 H 0.05 1.79 6.62 -2.39 -0.02 1.78 16 41 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.05 1.81 6.62 -2.39 -0.02 1.79 16 44 H 0.08 1.52 6.86 -2.38 -0.02 1.51 16 45 H -0.02 -0.85 8.14 -2.39 -0.02 -0.87 16 46 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 47 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -76.85 390.64 6.32 -70.53 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: 0.45 Total: 6.08 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 5.89 Total: -10.41 kcal Atomic # 7 Polarization: -81.58 SS G_CDS: -1.64 Total: -83.22 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.41 Total: -27.37 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -76.85 6.32 -70.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345911011.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.289 kcal (2) G-P(sol) polarization free energy of solvation -76.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds