Wall clock time and date at job start Tue Mar 31 2020 15:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.47071 * 2 1 4 4 C 1.52995 * 109.46883 * 119.99928 * 2 1 3 5 5 C 1.53003 * 109.46709 * 184.99763 * 4 2 1 6 6 O 1.42898 * 109.47041 * 180.02562 * 5 4 2 7 7 N 1.46495 * 109.46594 * 240.00022 * 2 1 3 8 8 C 1.34783 * 120.00238 * 85.00512 * 7 2 1 9 9 O 1.21673 * 119.99390 * 359.97438 * 8 7 2 10 10 C 1.46907 * 120.00002 * 179.97438 * 8 7 2 11 11 C 1.36372 * 126.77096 * 359.97343 * 10 8 7 12 12 N 1.35474 * 109.77145 * 180.02562 * 11 10 8 13 13 C 1.46493 * 124.78618 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47400 * 265.02448 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.37963 * 110.42294 * 0.22966 * 12 11 10 24 24 C 1.39129 * 133.18475 * 180.41237 * 23 12 11 25 25 C 1.37764 * 119.93012 * 179.62106 * 24 23 12 26 26 C 1.38758 * 120.63344 * 359.76454 * 25 24 23 27 27 C 1.37752 * 120.29929 * 359.97438 * 26 25 24 28 28 C 1.39272 * 119.67424 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46782 * 300.00259 * 1 2 3 30 30 H 1.09002 * 109.46956 * 60.00247 * 1 2 3 31 31 H 1.08994 * 109.46856 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47346 * 304.99813 * 4 2 1 33 33 H 1.09001 * 109.47368 * 65.00338 * 4 2 1 34 34 H 1.08998 * 109.47258 * 300.00104 * 5 4 2 35 35 H 1.09009 * 109.46988 * 60.00325 * 5 4 2 36 36 H 0.96702 * 114.00036 * 180.02562 * 6 5 4 37 37 H 0.96998 * 120.00296 * 264.99585 * 7 2 1 38 38 H 1.08003 * 125.11413 * 0.03970 * 11 10 8 39 39 H 1.09004 * 109.46794 * 145.02547 * 13 12 11 40 40 H 1.09000 * 109.47559 * 25.03023 * 13 12 11 41 41 H 1.09004 * 109.47066 * 60.00265 * 14 13 12 42 42 H 1.08994 * 109.47405 * 300.00096 * 14 13 12 43 43 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 44 44 H 1.08000 * 120.03441 * 359.38386 * 24 23 12 45 45 H 1.07999 * 119.68538 * 179.73324 * 25 24 23 46 46 H 1.07990 * 119.84724 * 179.97438 * 26 25 24 47 47 H 1.08006 * 120.16480 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 8 4.0413 -1.2874 2.4800 7 7 2.0183 -0.6906 -1.1962 8 6 2.1470 -0.0182 -2.3572 9 8 1.8573 1.1622 -2.4118 10 6 2.6371 -0.7107 -3.5566 11 6 2.9999 -2.0219 -3.6513 12 7 3.3998 -2.2965 -4.9161 13 6 3.8595 -3.6074 -5.3813 14 6 5.3864 -3.6684 -5.3069 15 6 5.8592 -5.0168 -5.7861 16 1 5.1423 -5.7561 -6.1115 17 6 7.2074 -5.3043 -5.8149 18 7 8.0804 -4.4039 -5.4189 19 14 7.7938 -6.9728 -6.4160 20 1 7.3537 -7.1760 -7.8197 21 1 9.2762 -7.0303 -6.3483 22 1 7.2179 -8.0389 -5.5575 23 6 3.3186 -1.1661 -5.7029 24 6 3.5976 -0.9167 -7.0429 25 6 3.4069 0.3454 -7.5613 26 6 2.9331 1.3746 -6.7603 27 6 2.6462 1.1461 -5.4325 28 6 2.8342 -0.1250 -4.8953 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -0.2617 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.9994 -1.0728 0.4259 35 1 3.8532 0.4371 1.3573 36 1 5.0021 -1.2592 2.5858 37 1 2.2490 -1.6317 -1.1527 38 1 2.9722 -2.7343 -2.8400 39 1 3.5395 -3.7597 -6.4121 40 1 3.4335 -4.3870 -4.7498 41 1 5.7063 -3.5161 -4.2761 42 1 5.8124 -2.8890 -5.9385 43 1 9.0288 -4.6063 -5.4388 44 1 3.9668 -1.7106 -7.6751 45 1 3.6288 0.5357 -8.6010 46 1 2.7888 2.3592 -7.1797 47 1 2.2771 1.9487 -4.8111 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346517233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:09 Heat of formation + Delta-G solvation = -49.017396 kcal Electronic energy + Delta-G solvation = -27734.033695 eV Core-core repulsion = 23881.336370 eV Total energy + Delta-G solvation = -3852.697325 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.24194 -39.42181 -37.37400 -36.88665 -35.63882 -34.10654 -32.54109 -31.67679 -30.43888 -29.24570 -28.87096 -28.28322 -25.26655 -23.73894 -22.81316 -22.49937 -21.74385 -20.85909 -20.40166 -19.58350 -17.74237 -17.25660 -16.74988 -16.48913 -15.95747 -15.26376 -15.23822 -15.12433 -14.91657 -14.77871 -14.44151 -14.04757 -13.86430 -13.60159 -13.43805 -13.22960 -12.92952 -12.57112 -12.48472 -12.36448 -12.19207 -12.05068 -11.82595 -11.41767 -11.30467 -11.24310 -11.11837 -11.09716 -10.74970 -10.64730 -10.32588 -10.19757 -9.95282 -9.68256 -9.48843 -9.24283 -9.07638 -8.58273 -7.95904 -7.35200 -6.22176 -4.28910 1.27140 1.85876 2.31076 3.08393 3.19696 3.25273 3.26010 3.29122 3.65777 3.86773 4.26090 4.28066 4.71289 4.73834 4.83467 4.92035 4.98906 5.07141 5.14045 5.20770 5.24599 5.30882 5.33834 5.44368 5.51124 5.56389 5.61745 5.71560 5.74585 5.83926 5.90162 5.95482 6.00199 6.02605 6.07266 6.32696 6.35516 6.51177 6.71826 6.87768 6.95265 7.01800 7.29533 7.34502 7.38327 7.50141 7.52537 7.63857 7.75053 8.07228 8.45580 8.76573 9.37237 10.88502 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.008562 B = 0.003507 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3269.464689 B = 7983.048218 C =10550.121189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.147 3.853 3 H 0.090 0.910 4 C -0.127 4.127 5 C 0.073 3.927 6 O -0.578 6.578 7 N -0.733 5.733 8 C 0.599 3.401 9 O -0.550 6.550 10 C -0.257 4.257 11 C 0.123 3.877 12 N -0.450 5.450 13 C 0.101 3.899 14 C 0.013 3.987 15 C -0.533 4.533 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.897 3.103 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 C 0.092 3.908 24 C -0.113 4.113 25 C -0.110 4.110 26 C -0.146 4.146 27 C -0.073 4.073 28 C -0.062 4.062 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.051 0.949 35 H 0.046 0.954 36 H 0.382 0.618 37 H 0.397 0.603 38 H 0.170 0.830 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.023 0.977 42 H 0.025 0.975 43 H 0.265 0.735 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.119 0.881 47 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.968 7.487 8.178 16.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.043 3.957 3 H 0.108 0.892 4 C -0.164 4.164 5 C -0.005 4.005 6 O -0.384 6.384 7 N -0.386 5.386 8 C 0.390 3.610 9 O -0.428 6.428 10 C -0.268 4.268 11 C -0.013 4.013 12 N -0.126 5.126 13 C -0.019 4.019 14 C -0.025 4.025 15 C -0.571 4.571 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.525 5.525 19 Si 0.725 3.275 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.201 1.201 23 C -0.013 4.013 24 C -0.133 4.133 25 C -0.129 4.129 26 C -0.165 4.165 27 C -0.092 4.092 28 C -0.066 4.066 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.229 0.771 37 H 0.231 0.769 38 H 0.187 0.813 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.041 0.959 42 H 0.044 0.956 43 H 0.074 0.926 44 H 0.141 0.859 45 H 0.140 0.860 46 H 0.137 0.863 47 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -12.510 7.937 8.111 16.890 hybrid contribution 1.320 -1.441 -0.373 1.989 sum -11.190 6.496 7.738 15.076 Atomic orbital electron populations 1.22159 0.94939 1.02255 1.02650 1.20810 0.94219 0.97529 0.83170 0.89218 1.21821 0.94559 1.02186 0.97883 1.22203 0.94748 0.95927 0.87611 1.86423 1.27522 1.78776 1.45631 1.45971 1.69101 1.13903 1.09590 1.17232 0.76164 0.85894 0.81712 1.90726 1.51354 1.15691 1.85048 1.19752 1.19353 0.93737 0.93963 1.22043 0.95814 0.95881 0.87550 1.44368 1.50634 1.10000 1.07641 1.22474 1.00187 0.78938 1.00262 1.19447 0.86426 0.98199 0.98427 1.20944 0.92167 0.98937 1.45095 0.92305 1.24997 0.96780 0.97254 0.94949 1.69957 1.02068 1.34156 1.46330 0.86574 0.77726 0.83799 0.79446 1.20045 1.21100 1.20056 1.18272 1.03508 0.86255 0.93290 1.20147 1.03179 0.97999 0.91942 1.20752 1.00460 0.92146 0.99577 1.20881 1.02813 0.98929 0.93846 1.20550 0.98749 0.95166 0.94701 1.18685 1.02844 0.93486 0.91567 0.91751 0.91662 0.92394 0.89748 0.90569 0.93096 0.93531 0.77115 0.76870 0.81311 0.90141 0.89874 0.95903 0.95645 0.92556 0.85851 0.85992 0.86314 0.85526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.48 37.16 0.35 -1.11 16 2 C 0.15 1.44 2.57 -67.93 -0.17 1.26 16 3 H 0.09 1.01 7.58 -51.93 -0.39 0.62 16 4 C -0.13 -1.06 5.12 -26.73 -0.14 -1.20 16 5 C 0.07 0.67 6.93 37.16 0.26 0.93 16 6 O -0.58 -5.60 13.66 -35.23 -0.48 -6.08 16 7 N -0.73 -8.15 4.52 -55.04 -0.25 -8.40 16 8 C 0.60 9.06 7.76 -12.75 -0.10 8.96 16 9 O -0.55 -9.87 15.82 5.21 0.08 -9.78 16 10 C -0.26 -4.14 6.27 -103.31 -0.65 -4.79 16 11 C 0.12 1.83 10.75 -16.62 -0.18 1.66 16 12 N -0.45 -7.74 2.74 -114.22 -0.31 -8.05 16 13 C 0.10 1.82 5.89 -4.05 -0.02 1.80 16 14 C 0.01 0.30 5.30 -27.88 -0.15 0.15 16 15 C -0.53 -13.72 9.11 -34.44 -0.31 -14.03 16 16 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -25.31 13.29 55.43 0.74 -24.57 16 19 Si 0.90 20.31 29.54 -169.99 -5.02 15.29 16 20 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 21 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 23 C 0.09 1.64 6.79 -83.97 -0.57 1.07 16 24 C -0.11 -1.88 9.97 -39.42 -0.39 -2.27 16 25 C -0.11 -1.60 10.01 -39.56 -0.40 -2.00 16 26 C -0.15 -2.11 10.03 -39.57 -0.40 -2.50 16 27 C -0.07 -1.20 9.85 -39.37 -0.39 -1.59 16 28 C -0.06 -1.09 6.27 -104.95 -0.66 -1.75 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.05 0.49 7.75 -51.93 -0.40 0.08 16 35 H 0.05 0.42 8.14 -51.92 -0.42 -0.01 16 36 H 0.38 2.25 9.12 45.56 0.42 2.66 16 37 H 0.40 3.62 7.48 -40.82 -0.31 3.31 16 38 H 0.17 1.86 7.38 -52.48 -0.39 1.47 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.08 1.34 8.11 -51.93 -0.42 0.92 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 44 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 45 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 46 H 0.12 1.38 8.06 -52.49 -0.42 0.95 16 47 H 0.13 2.05 7.45 -52.48 -0.39 1.66 16 LS Contribution 396.83 15.07 5.98 5.98 Total: -1.00 -32.79 396.83 -9.78 -42.56 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.50 Total: 6.85 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -4.01 Total: -13.81 kcal Atomic # 7 Polarization: -41.19 SS G_CDS: 0.17 Total: -41.01 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.40 Total: -15.87 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.02 Total: 15.29 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.79 -9.78 -42.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346517233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.453 kcal (2) G-P(sol) polarization free energy of solvation -32.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds