Wall clock time and date at job start Tue Mar 31 2020 15:39:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.47071 * 2 1 4 4 C 1.52995 * 109.46883 * 119.99928 * 2 1 3 5 5 C 1.53003 * 109.46709 * 184.99763 * 4 2 1 6 6 O 1.42898 * 109.47041 * 180.02562 * 5 4 2 7 7 N 1.46495 * 109.46594 * 240.00022 * 2 1 3 8 8 C 1.34783 * 120.00238 * 85.00512 * 7 2 1 9 9 O 1.21673 * 119.99390 * 359.97438 * 8 7 2 10 10 C 1.46907 * 120.00002 * 179.97438 * 8 7 2 11 11 C 1.36372 * 126.77096 * 359.97343 * 10 8 7 12 12 N 1.35474 * 109.77145 * 180.02562 * 11 10 8 13 13 C 1.46493 * 124.78618 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47400 * 265.02448 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.37963 * 110.42294 * 0.22966 * 12 11 10 24 24 C 1.39129 * 133.18475 * 180.41237 * 23 12 11 25 25 C 1.37764 * 119.93012 * 179.62106 * 24 23 12 26 26 C 1.38758 * 120.63344 * 359.76454 * 25 24 23 27 27 C 1.37752 * 120.29929 * 359.97438 * 26 25 24 28 28 C 1.39272 * 119.67424 * 0.02562 * 27 26 25 29 29 H 1.08998 * 109.46782 * 300.00259 * 1 2 3 30 30 H 1.09002 * 109.46956 * 60.00247 * 1 2 3 31 31 H 1.08994 * 109.46856 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47346 * 304.99813 * 4 2 1 33 33 H 1.09001 * 109.47368 * 65.00338 * 4 2 1 34 34 H 1.08998 * 109.47258 * 300.00104 * 5 4 2 35 35 H 1.09009 * 109.46988 * 60.00325 * 5 4 2 36 36 H 0.96702 * 114.00036 * 180.02562 * 6 5 4 37 37 H 0.96998 * 120.00296 * 264.99585 * 7 2 1 38 38 H 1.08003 * 125.11413 * 0.03970 * 11 10 8 39 39 H 1.09004 * 109.46794 * 145.02547 * 13 12 11 40 40 H 1.09000 * 109.47559 * 25.03023 * 13 12 11 41 41 H 1.09004 * 109.47066 * 60.00265 * 14 13 12 42 42 H 1.08994 * 109.47405 * 300.00096 * 14 13 12 43 43 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 44 44 H 1.08000 * 120.03441 * 359.38386 * 24 23 12 45 45 H 1.07999 * 119.68538 * 179.73324 * 25 24 23 46 46 H 1.07990 * 119.84724 * 179.97438 * 26 25 24 47 47 H 1.08006 * 120.16480 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 8 4.0413 -1.2874 2.4800 7 7 2.0183 -0.6906 -1.1962 8 6 2.1470 -0.0182 -2.3572 9 8 1.8573 1.1622 -2.4118 10 6 2.6371 -0.7107 -3.5566 11 6 2.9999 -2.0219 -3.6513 12 7 3.3998 -2.2965 -4.9161 13 6 3.8595 -3.6074 -5.3813 14 6 5.3864 -3.6684 -5.3069 15 6 5.8592 -5.0168 -5.7861 16 1 5.1423 -5.7561 -6.1115 17 6 7.2074 -5.3043 -5.8149 18 7 8.0804 -4.4039 -5.4189 19 14 7.7938 -6.9728 -6.4160 20 1 7.3537 -7.1760 -7.8197 21 1 9.2762 -7.0303 -6.3483 22 1 7.2179 -8.0389 -5.5575 23 6 3.3186 -1.1661 -5.7029 24 6 3.5976 -0.9167 -7.0429 25 6 3.4069 0.3454 -7.5613 26 6 2.9331 1.3746 -6.7603 27 6 2.6462 1.1461 -5.4325 28 6 2.8342 -0.1250 -4.8953 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -0.2617 2.1369 33 1 1.7517 -1.7715 1.2056 34 1 3.9994 -1.0728 0.4259 35 1 3.8532 0.4371 1.3573 36 1 5.0021 -1.2592 2.5858 37 1 2.2490 -1.6317 -1.1527 38 1 2.9722 -2.7343 -2.8400 39 1 3.5395 -3.7597 -6.4121 40 1 3.4335 -4.3870 -4.7498 41 1 5.7063 -3.5161 -4.2761 42 1 5.8124 -2.8890 -5.9385 43 1 9.0288 -4.6063 -5.4388 44 1 3.9668 -1.7106 -7.6751 45 1 3.6288 0.5357 -8.6010 46 1 2.7888 2.3592 -7.1797 47 1 2.2771 1.9487 -4.8111 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346517233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:39:08 Heat of formation + Delta-G solvation = -69.760181 kcal Electronic energy + Delta-G solvation = -27734.933170 eV Core-core repulsion = 23881.336370 eV Total energy + Delta-G solvation = -3853.596800 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.49090 -40.50147 -38.21098 -38.13090 -36.54935 -35.83923 -34.11784 -32.75614 -31.85159 -30.26771 -30.06759 -29.48765 -26.93097 -24.74708 -23.95673 -23.83261 -23.08561 -21.76942 -21.71988 -20.76533 -18.88272 -18.50226 -18.13786 -17.69476 -17.00111 -16.68744 -16.53763 -16.35685 -16.12333 -15.77759 -15.57020 -15.34034 -15.01588 -14.93925 -14.46479 -14.44071 -14.27536 -14.14932 -13.62075 -13.46501 -13.38803 -12.88387 -12.86380 -12.84476 -12.83154 -12.55579 -12.38090 -12.04040 -12.03694 -11.93827 -11.87883 -11.65375 -11.42700 -10.95262 -10.86938 -10.62855 -10.56075 -10.08137 -9.20777 -8.62965 -8.25080 -6.38893 0.04937 0.62102 1.06666 1.41989 1.43641 1.51611 1.82316 2.26634 2.39521 2.45957 3.01367 3.09651 3.18996 3.69698 3.71736 3.83287 3.98580 4.02426 4.12252 4.22583 4.26453 4.31530 4.44198 4.46076 4.48272 4.50795 4.59690 4.64482 4.69046 4.75447 4.81629 4.84385 4.90504 5.03994 5.11947 5.18642 5.32183 5.35672 5.37882 5.52867 5.58127 5.65017 5.69877 5.71723 5.84643 6.03217 6.23985 6.28455 6.63201 6.77534 6.82705 7.32305 7.34434 8.85951 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.008562 B = 0.003507 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3269.464689 B = 7983.048218 C =10550.121189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.148 3.852 3 H 0.073 0.927 4 C -0.117 4.117 5 C 0.071 3.929 6 O -0.591 6.591 7 N -0.716 5.716 8 C 0.599 3.401 9 O -0.585 6.585 10 C -0.272 4.272 11 C 0.130 3.870 12 N -0.460 5.460 13 C 0.118 3.882 14 C 0.022 3.978 15 C -0.543 4.543 16 H 0.074 0.926 17 C 0.006 3.994 18 N -0.931 5.931 19 Si 0.966 3.034 20 H -0.266 1.266 21 H -0.289 1.289 22 H -0.262 1.262 23 C 0.066 3.934 24 C -0.133 4.133 25 C -0.105 4.105 26 C -0.138 4.138 27 C -0.090 4.090 28 C -0.087 4.087 29 H 0.083 0.917 30 H 0.040 0.960 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.396 0.604 37 H 0.409 0.591 38 H 0.208 0.792 39 H 0.086 0.914 40 H 0.110 0.890 41 H -0.003 1.003 42 H -0.012 1.012 43 H 0.264 0.736 44 H 0.121 0.879 45 H 0.153 0.847 46 H 0.151 0.849 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.021 6.184 8.456 16.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.044 3.956 3 H 0.091 0.909 4 C -0.155 4.155 5 C -0.007 4.007 6 O -0.400 6.400 7 N -0.368 5.368 8 C 0.390 3.610 9 O -0.466 6.466 10 C -0.283 4.283 11 C -0.005 4.005 12 N -0.137 5.137 13 C -0.002 4.002 14 C -0.016 4.016 15 C -0.581 4.581 16 H 0.092 0.908 17 C -0.193 4.193 18 N -0.570 5.570 19 Si 0.790 3.210 20 H -0.191 1.191 21 H -0.215 1.215 22 H -0.187 1.187 23 C -0.038 4.038 24 C -0.153 4.153 25 C -0.124 4.124 26 C -0.157 4.157 27 C -0.109 4.109 28 C -0.091 4.091 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.088 0.912 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.246 0.754 37 H 0.245 0.755 38 H 0.225 0.775 39 H 0.105 0.895 40 H 0.128 0.872 41 H 0.015 0.985 42 H 0.006 0.994 43 H 0.073 0.927 44 H 0.139 0.861 45 H 0.171 0.829 46 H 0.169 0.831 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.579 6.610 8.418 17.290 hybrid contribution 1.653 -0.943 -0.443 1.954 sum -11.925 5.668 7.975 15.425 Atomic orbital electron populations 1.22110 0.94006 1.02962 1.02407 1.20889 0.94880 0.96775 0.83057 0.90904 1.21740 0.93982 1.02525 0.97226 1.22214 0.95308 0.95815 0.87344 1.86379 1.29134 1.78816 1.45646 1.45855 1.67763 1.14347 1.08856 1.17180 0.75968 0.85469 0.82408 1.90702 1.53127 1.17142 1.85672 1.19961 1.19913 0.94339 0.94038 1.22609 0.94152 0.96192 0.87505 1.44309 1.51475 1.09519 1.08440 1.22142 0.96276 0.80256 1.01512 1.19238 0.90310 0.96275 0.95756 1.21443 0.92615 0.99935 1.44115 0.90802 1.25941 0.97191 1.01031 0.95170 1.70108 1.02293 1.36474 1.48168 0.85485 0.76852 0.79322 0.79322 1.19121 1.21456 1.18701 1.18582 1.04457 0.86733 0.94018 1.20381 1.04011 0.99071 0.91810 1.21137 0.99048 0.91198 1.01044 1.21253 1.01103 1.00331 0.92978 1.20710 0.99621 0.94811 0.95759 1.19071 1.03442 0.94065 0.92571 0.89858 0.94048 0.91170 0.88629 0.89678 0.93704 0.93633 0.75415 0.75463 0.77537 0.89546 0.87190 0.98455 0.99355 0.92731 0.86069 0.82890 0.83113 0.85941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.48 71.98 0.68 -1.94 16 2 C 0.15 2.75 2.57 44.99 0.12 2.86 16 3 H 0.07 1.64 7.58 -2.39 -0.02 1.62 16 4 C -0.12 -1.74 5.12 30.59 0.16 -1.59 16 5 C 0.07 1.22 6.93 71.98 0.50 1.72 16 6 O -0.59 -10.59 13.66 -148.98 -2.03 -12.63 16 7 N -0.72 -15.31 4.52 -446.27 -2.02 -17.33 16 8 C 0.60 18.24 7.76 86.51 0.67 18.91 16 9 O -0.58 -21.59 15.82 -4.26 -0.07 -21.66 16 10 C -0.27 -8.81 6.27 -19.02 -0.12 -8.93 16 11 C 0.13 3.78 10.75 83.70 0.90 4.68 16 12 N -0.46 -15.74 2.74 -515.30 -1.41 -17.16 16 13 C 0.12 4.19 5.89 86.38 0.51 4.70 16 14 C 0.02 1.05 5.30 29.85 0.16 1.21 16 15 C -0.54 -27.78 9.11 25.60 0.23 -27.55 16 16 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 17 C 0.01 0.29 5.46 84.66 0.46 0.76 16 18 N -0.93 -54.17 13.29 21.45 0.28 -53.89 16 19 Si 0.97 41.23 29.54 68.60 2.03 43.26 16 20 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 21 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 22 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 23 C 0.07 2.42 6.79 38.92 0.26 2.68 16 24 C -0.13 -4.45 9.97 22.37 0.22 -4.23 16 25 C -0.11 -2.96 10.01 22.28 0.22 -2.74 16 26 C -0.14 -3.85 10.03 22.28 0.22 -3.62 16 27 C -0.09 -3.01 9.85 22.40 0.22 -2.79 16 28 C -0.09 -3.15 6.27 -20.08 -0.13 -3.28 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.04 0.81 7.75 -2.39 -0.02 0.80 16 35 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.40 4.20 9.12 -74.06 -0.68 3.52 16 37 H 0.41 6.73 7.48 -92.71 -0.69 6.04 16 38 H 0.21 4.07 7.38 -2.91 -0.02 4.05 16 39 H 0.09 2.96 8.14 -2.38 -0.02 2.94 16 40 H 0.11 3.31 8.11 -2.39 -0.02 3.29 16 41 H 0.00 -0.15 8.14 -2.38 -0.02 -0.17 16 42 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 43 H 0.26 14.58 8.31 -92.70 -0.77 13.81 16 44 H 0.12 4.00 8.06 -2.91 -0.02 3.97 16 45 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 46 H 0.15 3.15 8.06 -2.92 -0.02 3.13 16 47 H 0.12 4.09 7.45 -2.91 -0.02 4.07 16 Total: -1.00 -72.85 396.83 1.69 -71.16 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: -0.39 Total: 27.38 kcal Atomic # 6 Polarization: -24.44 SS G_CDS: 5.30 Total: -19.14 kcal Atomic # 7 Polarization: -85.22 SS G_CDS: -3.14 Total: -88.37 kcal Atomic # 8 Polarization: -32.18 SS G_CDS: -2.10 Total: -34.29 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.26 kcal Total: -72.85 1.69 -71.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346517233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.397 kcal (2) G-P(sol) polarization free energy of solvation -72.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds