Wall clock time and date at job start Tue Mar 31 2020 15:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47528 * 2 1 4 4 C 1.50701 * 109.47436 * 120.00254 * 2 1 3 5 5 H 1.07998 * 120.00385 * 119.99761 * 4 2 1 6 6 C 1.37874 * 119.99592 * 300.00038 * 4 2 1 7 7 N 1.31516 * 120.00576 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00072 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46868 * 89.99466 * 8 6 4 10 10 H 1.48492 * 109.47585 * 209.99783 * 8 6 4 11 11 H 1.48504 * 109.46740 * 330.00118 * 8 6 4 12 12 N 1.46503 * 109.47008 * 240.00196 * 2 1 3 13 13 C 1.46499 * 120.00031 * 299.99849 * 12 2 1 14 14 C 1.34773 * 120.00293 * 120.00049 * 12 2 1 15 15 O 1.21284 * 119.99859 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00038 * 179.97438 * 14 12 2 17 17 C 1.53003 * 109.46980 * 179.97438 * 16 14 12 18 18 C 1.53002 * 109.47038 * 174.87762 * 17 16 14 19 19 H 1.09005 * 109.41342 * 305.41959 * 18 17 16 20 20 C 1.52883 * 109.36102 * 65.22281 * 18 17 16 21 21 C 1.50720 * 109.63358 * 168.25198 * 20 18 17 22 22 C 1.38148 * 119.95962 * 146.79781 * 21 20 18 23 23 C 1.38257 * 120.04164 * 178.55797 * 22 21 20 24 24 C 1.38312 * 120.12376 * 359.97438 * 23 22 21 25 25 C 1.38081 * 120.08516 * 0.56848 * 24 23 22 26 26 C 1.38739 * 120.03954 * 325.98525 * 21 20 18 27 27 N 1.39763 * 120.21856 * 2.75609 * 26 21 20 28 28 C 1.34405 * 120.75966 * 13.20738 * 27 26 21 29 29 O 1.21293 * 119.63995 * 185.77289 * 28 27 26 30 30 H 1.09001 * 109.46777 * 59.99601 * 1 2 3 31 31 H 1.08992 * 109.47186 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46813 * 299.99880 * 1 2 3 33 33 H 0.96994 * 120.00493 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.47449 * 270.00535 * 13 12 2 35 35 H 1.09003 * 109.46884 * 30.00197 * 13 12 2 36 36 H 1.08999 * 109.47319 * 150.00085 * 13 12 2 37 37 H 1.09002 * 109.46940 * 60.00552 * 16 14 12 38 38 H 1.08999 * 109.47159 * 299.99808 * 16 14 12 39 39 H 1.09000 * 109.46900 * 54.88050 * 17 16 14 40 40 H 1.08996 * 109.47703 * 294.87844 * 17 16 14 41 41 H 1.09001 * 109.44104 * 48.20021 * 20 18 17 42 42 H 1.09001 * 109.44520 * 288.30313 * 20 18 17 43 43 H 1.07999 * 119.97609 * 358.57275 * 22 21 20 44 44 H 1.07999 * 119.94086 * 179.97438 * 23 22 21 45 45 H 1.08002 * 119.95534 * 180.28413 * 24 23 22 46 46 H 1.07994 * 120.03452 * 179.74952 * 25 24 23 47 47 H 0.96994 * 119.62299 * 193.18758 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6298 -0.5459 4.4122 10 1 1.3433 -0.9493 5.1120 11 1 2.4859 -2.5663 3.7118 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.0858 1.1256 -1.8917 16 6 3.2959 -0.7462 -3.3136 17 6 4.1453 0.2157 -4.1468 18 6 4.7600 -0.5387 -5.3275 19 1 5.3090 -1.4048 -4.9578 20 6 3.6467 -1.0059 -6.2654 21 6 4.2458 -1.4901 -7.5609 22 6 3.6494 -2.5271 -8.2518 23 6 4.1805 -2.9528 -9.4552 24 6 5.3092 -2.3418 -9.9708 25 6 5.9160 -1.3123 -9.2790 26 6 5.3860 -0.8838 -8.0682 27 7 6.0165 0.1384 -7.3533 28 6 5.7026 0.3728 -6.0677 29 8 6.1836 1.3292 -5.4975 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.7096 1.1617 3.4844 34 1 2.4157 -2.7377 -0.9717 35 1 0.6904 -2.3001 -0.9847 36 1 1.6237 -2.2852 -2.5003 37 1 2.4483 -1.0891 -3.9070 38 1 3.9016 -1.6024 -3.0166 39 1 4.9403 0.6291 -3.5262 40 1 3.5176 1.0249 -4.5198 41 1 2.9696 -0.1757 -6.4666 42 1 3.0935 -1.8189 -5.7952 43 1 2.7676 -3.0054 -7.8517 44 1 3.7131 -3.7639 -9.9938 45 1 5.7190 -2.6735 -10.9133 46 1 6.7996 -0.8385 -9.6804 47 1 6.6885 0.6847 -7.7900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349370105.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:41 Heat of formation + Delta-G solvation = -57.398024 kcal Electronic energy + Delta-G solvation = -27811.082596 eV Core-core repulsion = 23958.021860 eV Total energy + Delta-G solvation = -3853.060737 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.37320 -39.17918 -38.87763 -35.89870 -35.44473 -35.08393 -32.89083 -32.23406 -30.05621 -29.75868 -28.58841 -26.11219 -25.60502 -25.16460 -23.49469 -23.04389 -22.18226 -20.61743 -19.24433 -18.42021 -18.04547 -17.26717 -16.63475 -16.40628 -16.03394 -15.73485 -15.35047 -15.18406 -14.87928 -14.67712 -14.25098 -14.07671 -13.92192 -13.75490 -13.18837 -12.96753 -12.83890 -12.56139 -12.32136 -12.22262 -11.89204 -11.70368 -11.59223 -11.50540 -11.33902 -11.07044 -11.01709 -10.96205 -10.80583 -10.69573 -10.57234 -10.21383 -10.14787 -10.12397 -9.20117 -9.14772 -8.86817 -8.39550 -8.34056 -7.54004 -6.04504 -4.12374 0.84778 0.94041 2.34415 2.72959 3.28749 3.35027 3.36222 3.42336 3.46259 3.93980 4.09667 4.32028 4.33493 4.43034 4.56175 4.68284 4.82278 4.94233 4.98494 5.08107 5.19453 5.26078 5.29320 5.35776 5.50951 5.53094 5.60729 5.62442 5.72422 5.76757 5.88607 6.01182 6.07263 6.14575 6.21346 6.31257 6.37259 6.47651 6.55055 6.78724 6.84526 6.88057 7.08783 7.47585 7.56446 7.74946 7.77892 8.04934 8.23350 8.58441 8.87177 9.12159 9.54228 11.00788 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.022665 B = 0.002325 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.081664 B =12041.068282 C =12554.624209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.256 3.744 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.058 0.942 6 C 0.063 3.937 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.596 5.596 13 C 0.088 3.912 14 C 0.501 3.499 15 O -0.551 6.551 16 C -0.139 4.139 17 C -0.087 4.087 18 C -0.104 4.104 19 H 0.110 0.890 20 C -0.076 4.076 21 C -0.122 4.122 22 C -0.081 4.081 23 C -0.145 4.145 24 C -0.091 4.091 25 C -0.157 4.157 26 C 0.164 3.836 27 N -0.667 5.667 28 C 0.523 3.477 29 O -0.510 6.510 30 H 0.011 0.989 31 H 0.029 0.971 32 H 0.093 0.907 33 H 0.263 0.737 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.052 0.948 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.095 0.905 43 H 0.130 0.870 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.126 0.874 47 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.335 -10.323 -25.765 28.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.156 3.844 3 H 0.081 0.919 4 C -0.562 4.562 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.327 5.327 13 C -0.057 4.057 14 C 0.288 3.712 15 O -0.430 6.430 16 C -0.179 4.179 17 C -0.125 4.125 18 C -0.125 4.125 19 H 0.127 0.873 20 C -0.113 4.113 21 C -0.125 4.125 22 C -0.100 4.100 23 C -0.164 4.164 24 C -0.110 4.110 25 C -0.178 4.178 26 C 0.068 3.932 27 N -0.311 5.311 28 C 0.311 3.689 29 O -0.383 6.383 30 H 0.030 0.970 31 H 0.049 0.951 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.113 0.887 43 H 0.148 0.852 44 H 0.143 0.857 45 H 0.144 0.856 46 H 0.144 0.856 47 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges 5.532 -9.104 -24.986 27.162 hybrid contribution 0.631 -0.480 0.553 0.967 sum 6.163 -9.584 -24.433 26.959 Atomic orbital electron populations 1.22086 0.98320 0.99275 1.00817 1.18927 0.90803 0.94576 0.80085 0.91918 1.21318 1.31677 1.12920 0.90330 0.92346 1.24902 0.94989 0.95018 0.98975 1.69878 1.36428 1.22643 1.23705 0.86500 0.78658 0.79829 0.82412 1.20624 1.21152 1.19963 1.48245 1.49176 1.11607 1.23692 1.21540 1.01546 0.83343 0.99224 1.20371 0.79217 0.87203 0.84442 1.90670 1.58166 1.17205 1.76945 1.21720 1.00623 0.99636 0.95923 1.21226 1.00206 0.97040 0.94057 1.21323 0.95885 0.98845 0.96445 0.87262 1.20619 0.97170 1.02366 0.91180 1.19572 0.95521 0.98872 0.98530 1.20915 0.99268 0.95290 0.94520 1.21109 0.97378 1.01229 0.96639 1.20957 0.95499 0.95146 0.99360 1.20784 1.01676 1.00052 0.95276 1.17660 0.92901 0.90000 0.92631 1.43657 1.41499 1.33830 1.12143 1.20773 0.81680 0.85523 0.80962 1.90812 1.52526 1.28657 1.66319 0.97010 0.95147 0.88853 0.92718 0.93404 0.90987 0.92976 0.89449 0.89346 0.89267 0.90765 0.89544 0.88693 0.85190 0.85743 0.85611 0.85573 0.75367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.95 37.16 0.33 -3.18 16 2 C 0.26 6.61 2.64 -69.08 -0.18 6.43 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.54 16 4 C -0.52 -14.29 8.37 -34.44 -0.29 -14.58 16 5 H 0.06 1.57 7.65 -52.49 -0.40 1.17 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.43 11.32 55.43 0.63 -24.81 16 8 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 12 N -0.60 -12.59 2.75 -175.26 -0.48 -13.07 16 13 C 0.09 1.41 9.48 59.85 0.57 1.98 16 14 C 0.50 10.22 7.67 -10.99 -0.08 10.14 16 15 O -0.55 -13.82 15.24 5.55 0.08 -13.73 16 16 C -0.14 -1.90 3.90 -27.88 -0.11 -2.01 16 17 C -0.09 -1.22 3.62 -26.73 -0.10 -1.31 16 18 C -0.10 -1.11 2.48 -91.89 -0.23 -1.33 16 19 H 0.11 1.03 8.14 -51.93 -0.42 0.60 16 20 C -0.08 -0.64 4.75 -27.93 -0.13 -0.77 16 21 C -0.12 -1.01 5.66 -104.46 -0.59 -1.60 16 22 C -0.08 -0.55 9.68 -39.61 -0.38 -0.93 16 23 C -0.14 -0.87 10.04 -39.55 -0.40 -1.27 16 24 C -0.09 -0.54 10.04 -39.61 -0.40 -0.94 16 25 C -0.16 -1.07 9.90 -39.38 -0.39 -1.46 16 26 C 0.16 1.40 6.54 -83.79 -0.55 0.85 16 27 N -0.67 -6.33 5.35 -10.04 -0.05 -6.39 16 28 C 0.52 6.47 7.49 -11.21 -0.08 6.39 16 29 O -0.51 -8.39 16.72 5.55 0.09 -8.30 16 30 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.03 0.66 6.66 -51.93 -0.35 0.32 16 32 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 33 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 34 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 1.19 6.43 -51.93 -0.33 0.85 16 36 H 0.05 0.62 6.44 -51.93 -0.33 0.29 16 37 H 0.09 0.94 6.36 -51.93 -0.33 0.61 16 38 H 0.09 1.05 8.11 -51.93 -0.42 0.63 16 39 H 0.09 1.52 7.46 -51.93 -0.39 1.14 16 40 H 0.07 1.11 8.09 -51.93 -0.42 0.69 16 41 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 42 H 0.09 0.61 7.21 -51.93 -0.37 0.24 16 43 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.12 0.51 8.06 -52.49 -0.42 0.09 16 45 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 46 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 47 H 0.41 3.20 8.80 -40.82 -0.36 2.84 16 LS Contribution 377.95 15.07 5.70 5.70 Total: -1.00 -34.83 377.95 -9.06 -43.89 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -6.89 Total: 2.42 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -3.11 Total: -1.94 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: 0.09 Total: -44.27 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: 0.18 Total: -22.03 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.83 -9.06 -43.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349370105.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.513 kcal (2) G-P(sol) polarization free energy of solvation -34.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds