Wall clock time and date at job start Tue Mar 31 2020 15:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47528 * 2 1 4 4 C 1.50701 * 109.47436 * 120.00254 * 2 1 3 5 5 H 1.07998 * 120.00385 * 119.99761 * 4 2 1 6 6 C 1.37874 * 119.99592 * 300.00038 * 4 2 1 7 7 N 1.31516 * 120.00576 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00072 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.46868 * 89.99466 * 8 6 4 10 10 H 1.48492 * 109.47585 * 209.99783 * 8 6 4 11 11 H 1.48504 * 109.46740 * 330.00118 * 8 6 4 12 12 N 1.46503 * 109.47008 * 240.00196 * 2 1 3 13 13 C 1.46499 * 120.00031 * 299.99849 * 12 2 1 14 14 C 1.34773 * 120.00293 * 120.00049 * 12 2 1 15 15 O 1.21284 * 119.99859 * 359.97438 * 14 12 2 16 16 C 1.50699 * 120.00038 * 179.97438 * 14 12 2 17 17 C 1.53003 * 109.46980 * 179.97438 * 16 14 12 18 18 C 1.53002 * 109.47038 * 174.87762 * 17 16 14 19 19 H 1.09005 * 109.41342 * 305.41959 * 18 17 16 20 20 C 1.52883 * 109.36102 * 65.22281 * 18 17 16 21 21 C 1.50720 * 109.63358 * 168.25198 * 20 18 17 22 22 C 1.38148 * 119.95962 * 146.79781 * 21 20 18 23 23 C 1.38257 * 120.04164 * 178.55797 * 22 21 20 24 24 C 1.38312 * 120.12376 * 359.97438 * 23 22 21 25 25 C 1.38081 * 120.08516 * 0.56848 * 24 23 22 26 26 C 1.38739 * 120.03954 * 325.98525 * 21 20 18 27 27 N 1.39763 * 120.21856 * 2.75609 * 26 21 20 28 28 C 1.34405 * 120.75966 * 13.20738 * 27 26 21 29 29 O 1.21293 * 119.63995 * 185.77289 * 28 27 26 30 30 H 1.09001 * 109.46777 * 59.99601 * 1 2 3 31 31 H 1.08992 * 109.47186 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46813 * 299.99880 * 1 2 3 33 33 H 0.96994 * 120.00493 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.47449 * 270.00535 * 13 12 2 35 35 H 1.09003 * 109.46884 * 30.00197 * 13 12 2 36 36 H 1.08999 * 109.47319 * 150.00085 * 13 12 2 37 37 H 1.09002 * 109.46940 * 60.00552 * 16 14 12 38 38 H 1.08999 * 109.47159 * 299.99808 * 16 14 12 39 39 H 1.09000 * 109.46900 * 54.88050 * 17 16 14 40 40 H 1.08996 * 109.47703 * 294.87844 * 17 16 14 41 41 H 1.09001 * 109.44104 * 48.20021 * 20 18 17 42 42 H 1.09001 * 109.44520 * 288.30313 * 20 18 17 43 43 H 1.07999 * 119.97609 * 358.57275 * 22 21 20 44 44 H 1.07999 * 119.94086 * 179.97438 * 23 22 21 45 45 H 1.08002 * 119.95534 * 180.28413 * 24 23 22 46 46 H 1.07994 * 120.03452 * 179.74952 * 25 24 23 47 47 H 0.96994 * 119.62299 * 193.18758 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1204 4.0079 9 1 3.6298 -0.5459 4.4122 10 1 1.3433 -0.9493 5.1120 11 1 2.4859 -2.5663 3.7118 12 7 2.0183 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4281 14 6 2.7931 -0.0356 -2.0834 15 8 3.0858 1.1256 -1.8917 16 6 3.2959 -0.7462 -3.3136 17 6 4.1453 0.2157 -4.1468 18 6 4.7600 -0.5387 -5.3275 19 1 5.3090 -1.4048 -4.9578 20 6 3.6467 -1.0059 -6.2654 21 6 4.2458 -1.4901 -7.5609 22 6 3.6494 -2.5271 -8.2518 23 6 4.1805 -2.9528 -9.4552 24 6 5.3092 -2.3418 -9.9708 25 6 5.9160 -1.3123 -9.2790 26 6 5.3860 -0.8838 -8.0682 27 7 6.0165 0.1384 -7.3533 28 6 5.7026 0.3728 -6.0677 29 8 6.1836 1.3292 -5.4975 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.7096 1.1617 3.4844 34 1 2.4157 -2.7377 -0.9717 35 1 0.6904 -2.3001 -0.9847 36 1 1.6237 -2.2852 -2.5003 37 1 2.4483 -1.0891 -3.9070 38 1 3.9016 -1.6024 -3.0166 39 1 4.9403 0.6291 -3.5262 40 1 3.5176 1.0249 -4.5198 41 1 2.9696 -0.1757 -6.4666 42 1 3.0935 -1.8189 -5.7952 43 1 2.7676 -3.0054 -7.8517 44 1 3.7131 -3.7639 -9.9938 45 1 5.7190 -2.6735 -10.9133 46 1 6.7996 -0.8385 -9.6804 47 1 6.6885 0.6847 -7.7900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349370105.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:40 Heat of formation + Delta-G solvation = -80.049365 kcal Electronic energy + Delta-G solvation = -27812.064832 eV Core-core repulsion = 23958.021860 eV Total energy + Delta-G solvation = -3854.042972 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.14195 -40.69299 -39.69572 -37.28519 -36.54402 -36.09907 -34.78350 -33.12098 -31.53538 -30.46646 -29.72757 -27.52980 -27.26996 -26.43431 -24.50778 -23.60408 -23.14174 -22.14945 -19.99482 -19.84558 -18.87470 -18.49353 -18.15441 -17.77135 -17.14610 -17.04626 -16.46990 -16.32238 -16.17083 -15.63664 -15.33411 -15.07891 -14.75039 -14.69204 -14.41930 -14.17140 -14.10405 -13.71323 -13.53283 -13.43879 -13.22570 -13.01389 -12.90781 -12.74241 -12.61545 -12.52070 -12.46421 -12.15656 -12.13928 -12.08719 -11.84259 -11.71865 -11.62039 -11.16603 -11.06872 -10.62909 -10.43986 -9.68182 -9.26790 -8.95415 -8.13692 -6.30473 0.26199 0.46884 1.40578 1.42492 1.50336 1.52148 1.89131 1.97221 2.35685 2.55231 2.91571 3.13881 3.29724 3.53348 3.69528 3.84444 3.95614 4.07101 4.18835 4.30805 4.35619 4.42317 4.51458 4.52369 4.62658 4.71445 4.74210 4.77941 4.84600 4.90473 4.92232 5.00922 5.07482 5.10249 5.14135 5.19514 5.25042 5.33670 5.48734 5.53355 5.66363 5.68915 5.71052 5.75762 5.95083 6.07331 6.18384 6.20966 6.78537 6.91285 6.93348 7.35237 7.55846 8.90494 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.022665 B = 0.002325 C = 0.002230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.081664 B =12041.068282 C =12554.624209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.258 3.742 3 H 0.002 0.998 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.965 3.035 9 H -0.285 1.285 10 H -0.280 1.280 11 H -0.259 1.259 12 N -0.603 5.603 13 C 0.081 3.919 14 C 0.486 3.514 15 O -0.613 6.613 16 C -0.120 4.120 17 C -0.079 4.079 18 C -0.094 4.094 19 H 0.129 0.871 20 C -0.072 4.072 21 C -0.132 4.132 22 C -0.084 4.084 23 C -0.143 4.143 24 C -0.095 4.095 25 C -0.159 4.159 26 C 0.135 3.865 27 N -0.658 5.658 28 C 0.516 3.484 29 O -0.567 6.567 30 H 0.020 0.980 31 H 0.051 0.949 32 H 0.064 0.936 33 H 0.264 0.736 34 H 0.054 0.946 35 H 0.067 0.933 36 H 0.105 0.895 37 H 0.133 0.867 38 H 0.120 0.880 39 H 0.046 0.954 40 H 0.053 0.947 41 H 0.080 0.920 42 H 0.126 0.874 43 H 0.153 0.847 44 H 0.148 0.852 45 H 0.149 0.851 46 H 0.139 0.861 47 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.840 -14.667 -28.084 32.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.155 3.845 3 H 0.020 0.980 4 C -0.574 4.574 5 H 0.080 0.920 6 C -0.188 4.188 7 N -0.559 5.559 8 Si 0.790 3.210 9 H -0.211 1.211 10 H -0.205 1.205 11 H -0.183 1.183 12 N -0.334 5.334 13 C -0.061 4.061 14 C 0.276 3.724 15 O -0.496 6.496 16 C -0.159 4.159 17 C -0.118 4.118 18 C -0.114 4.114 19 H 0.147 0.853 20 C -0.108 4.108 21 C -0.135 4.135 22 C -0.102 4.102 23 C -0.162 4.162 24 C -0.113 4.113 25 C -0.180 4.180 26 C 0.040 3.960 27 N -0.301 5.301 28 C 0.306 3.694 29 O -0.446 6.446 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.086 0.914 36 H 0.124 0.876 37 H 0.151 0.849 38 H 0.138 0.862 39 H 0.065 0.935 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.144 0.856 43 H 0.170 0.830 44 H 0.165 0.835 45 H 0.166 0.834 46 H 0.157 0.843 47 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 5.020 -13.533 -27.375 30.948 hybrid contribution 0.801 0.866 1.133 1.635 sum 5.821 -12.667 -26.242 29.715 Atomic orbital electron populations 1.21857 0.97065 1.00225 0.99836 1.18508 0.91727 0.92063 0.82170 0.97992 1.21595 1.31665 1.12966 0.91169 0.92045 1.25782 0.95165 0.95721 1.02170 1.70032 1.37474 1.24008 1.24342 0.85453 0.77655 0.79326 0.78559 1.21105 1.20546 1.18263 1.48275 1.49166 1.13629 1.22295 1.21872 1.01372 0.79991 1.02877 1.21619 0.78119 0.86768 0.85871 1.90645 1.60178 1.20314 1.78504 1.21719 1.02253 0.99226 0.92696 1.21038 0.98753 0.97179 0.94838 1.21235 0.96471 0.98307 0.95436 0.85308 1.20634 0.96092 1.03097 0.91026 1.19669 0.95653 0.99501 0.98675 1.21197 0.99802 0.94636 0.94610 1.21485 0.97003 1.01303 0.96380 1.21306 0.95446 0.94517 1.00072 1.21031 1.02114 1.00206 0.94634 1.17934 0.93947 0.90495 0.93575 1.43536 1.41243 1.34027 1.11313 1.21158 0.81452 0.85086 0.81733 1.90788 1.54881 1.31120 1.67762 0.96114 0.93019 0.91685 0.92730 0.92695 0.91404 0.87644 0.84925 0.86178 0.93533 0.92791 0.90172 0.85602 0.82953 0.83464 0.83371 0.84301 0.74839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.39 8.95 71.98 0.64 -5.75 16 2 C 0.26 13.70 2.64 44.24 0.12 13.82 16 3 H 0.00 0.14 6.90 -2.39 -0.02 0.12 16 4 C -0.54 -29.58 8.37 25.60 0.21 -29.37 16 5 H 0.06 3.27 7.65 -2.91 -0.02 3.25 16 6 C 0.01 0.60 5.30 84.65 0.45 1.05 16 7 N -0.92 -54.29 11.32 21.45 0.24 -54.05 16 8 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 9 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 12 N -0.60 -25.17 2.75 -826.79 -2.28 -27.45 16 13 C 0.08 2.32 9.48 127.77 1.21 3.53 16 14 C 0.49 19.97 7.67 87.66 0.67 20.65 16 15 O -0.61 -32.75 15.24 -3.04 -0.05 -32.79 16 16 C -0.12 -2.97 3.90 29.85 0.12 -2.86 16 17 C -0.08 -2.24 3.62 30.60 0.11 -2.13 16 18 C -0.09 -1.88 2.48 -11.62 -0.03 -1.90 16 19 H 0.13 2.09 8.14 -2.38 -0.02 2.07 16 20 C -0.07 -0.97 4.75 29.82 0.14 -0.83 16 21 C -0.13 -1.78 5.66 -19.76 -0.11 -1.90 16 22 C -0.08 -0.78 9.68 22.25 0.22 -0.57 16 23 C -0.14 -1.14 10.04 22.29 0.22 -0.91 16 24 C -0.10 -0.81 10.04 22.25 0.22 -0.58 16 25 C -0.16 -1.81 9.90 22.40 0.22 -1.59 16 26 C 0.14 2.07 6.54 38.17 0.25 2.32 16 27 N -0.66 -12.38 5.35 -304.26 -1.63 -14.01 16 28 C 0.52 13.13 7.49 87.67 0.66 13.79 16 29 O -0.57 -20.11 16.72 -3.07 -0.05 -20.17 16 30 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.05 2.24 6.66 -2.39 -0.02 2.22 16 32 H 0.06 3.54 6.07 -2.39 -0.01 3.53 16 33 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 34 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.07 2.02 6.43 -2.39 -0.02 2.00 16 36 H 0.11 1.89 6.44 -2.39 -0.02 1.88 16 37 H 0.13 2.14 6.36 -2.39 -0.02 2.13 16 38 H 0.12 2.32 8.11 -2.39 -0.02 2.30 16 39 H 0.05 1.71 7.46 -2.39 -0.02 1.69 16 40 H 0.05 1.70 8.09 -2.39 -0.02 1.68 16 41 H 0.08 1.21 8.05 -2.39 -0.02 1.20 16 42 H 0.13 0.92 7.21 -2.39 -0.02 0.90 16 43 H 0.15 0.69 8.06 -2.91 -0.02 0.67 16 44 H 0.15 0.49 8.06 -2.91 -0.02 0.46 16 45 H 0.15 0.55 8.06 -2.91 -0.02 0.53 16 46 H 0.14 1.11 8.06 -2.91 -0.02 1.08 16 47 H 0.41 6.65 8.80 -92.71 -0.82 5.83 16 Total: -1.00 -84.02 377.95 3.77 -80.25 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.17 Total: 15.64 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 5.33 Total: 6.77 kcal Atomic # 7 Polarization: -91.84 SS G_CDS: -3.66 Total: -95.50 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: -0.10 Total: -52.96 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -84.02 3.77 -80.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349370105.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.205 kcal (2) G-P(sol) polarization free energy of solvation -84.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds