Wall clock time and date at job start Tue Mar 31 2020 15:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46908 * 2 1 4 4 C 1.50698 * 109.47221 * 239.99763 * 2 1 3 5 5 H 1.07991 * 120.00300 * 245.45213 * 4 2 1 6 6 C 1.37882 * 119.99966 * 65.45776 * 4 2 1 7 7 N 1.31510 * 119.99889 * 9.61488 * 6 4 2 8 8 Si 1.86793 * 119.99937 * 189.61975 * 6 4 2 9 9 H 1.48502 * 109.47516 * 84.98993 * 8 6 4 10 10 H 1.48500 * 109.47186 * 204.99062 * 8 6 4 11 11 H 1.48497 * 109.47308 * 324.98736 * 8 6 4 12 12 N 1.46503 * 109.47294 * 119.99499 * 2 1 3 13 13 C 1.46501 * 119.99776 * 60.00178 * 12 2 1 14 14 C 1.34776 * 119.99976 * 240.00208 * 12 2 1 15 15 O 1.21276 * 120.00377 * 0.02562 * 14 12 2 16 16 C 1.50697 * 119.99558 * 180.02562 * 14 12 2 17 17 C 1.53001 * 109.46927 * 180.02562 * 16 14 12 18 18 C 1.53004 * 109.47245 * 179.97438 * 17 16 14 19 19 H 1.08998 * 109.41510 * 305.14835 * 18 17 16 20 20 C 1.52882 * 109.41306 * 185.35623 * 18 17 16 21 21 C 1.50699 * 109.67090 * 288.05786 * 20 18 17 22 22 C 1.38152 * 119.94342 * 147.43390 * 21 20 18 23 23 C 1.38268 * 120.04441 * 178.40783 * 22 21 20 24 24 C 1.38298 * 120.12377 * 0.02562 * 23 22 21 25 25 C 1.38075 * 120.08657 * 0.37673 * 24 23 22 26 26 C 1.38749 * 120.06118 * 326.50484 * 21 20 18 27 27 N 1.39764 * 120.22981 * 2.00084 * 26 21 20 28 28 C 1.34414 * 120.72335 * 13.64934 * 27 26 21 29 29 O 1.21283 * 119.67273 * 185.85261 * 28 27 26 30 30 H 1.09000 * 109.46989 * 63.28973 * 1 2 3 31 31 H 1.09004 * 109.46920 * 183.28847 * 1 2 3 32 32 H 1.08995 * 109.47226 * 303.28641 * 1 2 3 33 33 H 0.97001 * 120.00096 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47418 * 270.00099 * 13 12 2 35 35 H 1.09003 * 109.46837 * 29.99913 * 13 12 2 36 36 H 1.08997 * 109.46932 * 149.99914 * 13 12 2 37 37 H 1.09000 * 109.47406 * 60.00299 * 16 14 12 38 38 H 1.09002 * 109.47502 * 300.00000 * 16 14 12 39 39 H 1.09001 * 109.47398 * 299.99906 * 17 16 14 40 40 H 1.08998 * 109.47280 * 60.00254 * 17 16 14 41 41 H 1.08995 * 109.44021 * 48.12255 * 20 18 17 42 42 H 1.09003 * 109.44079 * 168.00586 * 20 18 17 43 43 H 1.07999 * 119.97693 * 358.42674 * 22 21 20 44 44 H 1.07996 * 119.93401 * 180.02562 * 23 22 21 45 45 H 1.07999 * 119.96019 * 180.35114 * 24 23 22 46 46 H 1.07997 * 120.04049 * 179.97438 * 25 24 23 47 47 H 0.96997 * 119.63548 * 193.67616 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5787 -1.6369 -1.1338 6 6 1.7946 -0.1775 -2.4796 7 7 1.3003 1.0359 -2.5936 8 14 2.1744 -1.1788 -4.0100 9 1 1.0215 -2.0609 -4.3233 10 1 2.4214 -0.2627 -5.1524 11 1 3.3823 -2.0090 -3.7713 12 7 2.0184 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4281 14 6 2.7932 -0.0354 2.0833 15 8 3.0858 1.1258 1.8916 16 6 3.2960 -0.7459 3.3135 17 6 4.1454 0.2160 4.1467 18 6 4.6554 -0.5052 5.3960 19 1 3.8109 -0.9269 5.9410 20 6 5.3909 0.4907 6.2929 21 6 6.7105 0.8598 5.6657 22 6 7.2302 2.1268 5.8476 23 6 8.4563 2.4573 5.3006 24 6 9.1653 1.5214 4.5698 25 6 8.6471 0.2561 4.3777 26 6 7.4129 -0.0777 4.9220 27 7 6.8816 -1.3538 4.7160 28 6 5.5909 -1.6124 4.9879 29 8 5.1756 -2.7489 4.9041 30 1 -0.3633 0.4619 -0.9180 31 1 -0.3633 -1.0260 0.0590 32 1 -0.3633 0.5640 0.8590 33 1 1.1326 1.4107 -3.4724 34 1 0.7377 -2.1443 1.9994 35 1 1.5296 -2.5968 0.4709 36 1 2.4630 -2.5817 1.9865 37 1 3.9018 -1.6021 3.0166 38 1 2.4485 -1.0889 3.9070 39 1 4.9930 0.5594 3.5535 40 1 3.5393 1.0718 4.4437 41 1 4.7833 1.3875 6.4138 42 1 5.5672 0.0385 7.2689 43 1 6.6785 2.8596 6.4178 44 1 8.8610 3.4482 5.4443 45 1 10.1253 1.7806 4.1485 46 1 9.2012 -0.4741 3.8066 47 1 7.4506 -2.0607 4.3733 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349370112.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:49 Heat of formation + Delta-G solvation = -59.767041 kcal Electronic energy + Delta-G solvation = -28410.584938 eV Core-core repulsion = 24557.421473 eV Total energy + Delta-G solvation = -3853.163465 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.38752 -39.11569 -38.76670 -35.86640 -35.31597 -34.93558 -32.88047 -32.20099 -30.09830 -29.69161 -28.74611 -26.05084 -25.22756 -25.00321 -23.53400 -22.93019 -22.59860 -20.74315 -19.04687 -18.19083 -18.13832 -17.10918 -16.61426 -16.34770 -15.73586 -15.72066 -15.34204 -15.20586 -14.77059 -14.57211 -14.37057 -14.02794 -13.90008 -13.43604 -13.22272 -12.90972 -12.73614 -12.66224 -12.40643 -12.02160 -11.91896 -11.72011 -11.53968 -11.47324 -11.28817 -11.08767 -10.98004 -10.96200 -10.85817 -10.74741 -10.68150 -10.24489 -10.15578 -10.02242 -9.20259 -9.05163 -8.83574 -8.37671 -8.21202 -7.54334 -6.06590 -4.11078 0.98225 1.09485 2.39051 2.83721 3.28249 3.34685 3.36574 3.47199 3.56658 3.95791 4.12707 4.37132 4.44134 4.44315 4.66651 4.76963 4.82217 5.05344 5.12241 5.19119 5.22959 5.25868 5.32247 5.41807 5.52405 5.60358 5.64333 5.74678 5.75584 5.89752 5.93430 6.06494 6.13747 6.16759 6.29199 6.29701 6.41903 6.48573 6.64745 6.70944 6.79200 6.98497 7.02561 7.39318 7.58619 7.73500 7.80846 7.96359 8.20934 8.58777 8.88463 9.12508 9.53881 11.00811 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014404 B = 0.002967 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.482891 B = 9434.643280 C = 9934.800174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.255 3.745 3 H 0.069 0.931 4 C -0.529 4.529 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.894 3.106 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.594 5.594 13 C 0.082 3.918 14 C 0.503 3.497 15 O -0.554 6.554 16 C -0.143 4.143 17 C -0.090 4.090 18 C -0.107 4.107 19 H 0.114 0.886 20 C -0.074 4.074 21 C -0.120 4.120 22 C -0.082 4.082 23 C -0.143 4.143 24 C -0.090 4.090 25 C -0.154 4.154 26 C 0.164 3.836 27 N -0.663 5.663 28 C 0.528 3.472 29 O -0.522 6.522 30 H 0.075 0.925 31 H 0.031 0.969 32 H 0.015 0.985 33 H 0.263 0.737 34 H 0.042 0.958 35 H 0.079 0.921 36 H 0.055 0.945 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.129 0.871 44 H 0.125 0.875 45 H 0.126 0.874 46 H 0.127 0.873 47 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.759 -1.126 19.623 22.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.155 3.845 3 H 0.087 0.913 4 C -0.568 4.568 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.325 5.325 13 C -0.062 4.062 14 C 0.290 3.710 15 O -0.434 6.434 16 C -0.183 4.183 17 C -0.128 4.128 18 C -0.128 4.128 19 H 0.132 0.868 20 C -0.111 4.111 21 C -0.122 4.122 22 C -0.100 4.100 23 C -0.162 4.162 24 C -0.108 4.108 25 C -0.175 4.175 26 C 0.068 3.932 27 N -0.306 5.306 28 C 0.317 3.683 29 O -0.397 6.397 30 H 0.094 0.906 31 H 0.050 0.950 32 H 0.034 0.966 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.097 0.903 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.113 0.887 42 H 0.101 0.899 43 H 0.147 0.853 44 H 0.143 0.857 45 H 0.144 0.856 46 H 0.145 0.855 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 11.408 -0.943 19.374 22.503 hybrid contribution 0.484 -1.001 -1.234 1.661 sum 11.892 -1.944 18.140 21.777 Atomic orbital electron populations 1.22006 0.98660 0.98833 1.00340 1.18928 0.90371 0.95100 0.80122 0.91274 1.21286 1.36466 1.08551 0.90483 0.92286 1.24897 0.95164 0.94616 0.98921 1.69974 1.44450 1.13712 1.24030 0.86581 0.78692 0.80041 0.82521 1.20469 1.21191 1.20009 1.48222 1.49094 1.11572 1.23593 1.21612 0.98912 0.83396 1.02254 1.20357 0.79166 0.87129 0.84331 1.90642 1.58482 1.17191 1.77036 1.21750 1.01009 0.99538 0.96037 1.21317 1.00452 0.97755 0.93290 1.21516 0.97775 0.94493 0.99031 0.86819 1.20543 0.92857 0.99864 0.97824 1.19456 0.97503 0.94295 1.00984 1.20878 0.95536 0.94832 0.98757 1.21100 0.95505 0.99795 0.99751 1.20954 0.99718 0.92567 0.97602 1.20791 0.95563 0.98197 1.02930 1.17615 0.93860 0.84850 0.96913 1.43574 1.11563 1.11108 1.64399 1.20714 0.81988 0.90212 0.75403 1.90773 1.75484 1.22741 1.50720 0.90634 0.94972 0.96573 0.92702 0.93903 0.90252 0.92649 0.89550 0.89249 0.90598 0.89407 0.88703 0.89949 0.85307 0.85743 0.85556 0.85506 0.75285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.12 37.16 0.34 -3.02 16 2 C 0.26 6.67 2.50 -69.08 -0.17 6.50 16 3 H 0.07 2.11 6.84 -51.93 -0.36 1.75 16 4 C -0.53 -14.65 8.01 -34.44 -0.28 -14.92 16 5 H 0.06 1.61 7.16 -52.49 -0.38 1.24 16 6 C 0.07 1.87 5.17 -17.82 -0.09 1.78 16 7 N -0.88 -25.70 12.16 55.43 0.67 -25.03 16 8 Si 0.89 21.34 29.55 -169.99 -5.02 16.32 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.59 -13.12 2.75 -175.26 -0.48 -13.60 16 13 C 0.08 1.46 9.16 59.85 0.55 2.01 16 14 C 0.50 10.69 7.67 -10.99 -0.08 10.61 16 15 O -0.55 -13.84 15.31 5.56 0.09 -13.76 16 16 C -0.14 -2.24 4.06 -27.88 -0.11 -2.36 16 17 C -0.09 -1.22 3.75 -26.73 -0.10 -1.32 16 18 C -0.11 -1.15 2.53 -91.88 -0.23 -1.38 16 19 H 0.11 1.08 8.14 -51.93 -0.42 0.66 16 20 C -0.07 -0.63 5.41 -27.94 -0.15 -0.78 16 21 C -0.12 -1.17 5.10 -104.46 -0.53 -1.70 16 22 C -0.08 -0.70 9.68 -39.60 -0.38 -1.09 16 23 C -0.14 -1.17 10.04 -39.55 -0.40 -1.57 16 24 C -0.09 -0.75 10.04 -39.62 -0.40 -1.15 16 25 C -0.15 -1.42 9.90 -39.38 -0.39 -1.81 16 26 C 0.16 1.70 6.35 -83.79 -0.53 1.17 16 27 N -0.66 -7.19 5.35 -10.03 -0.05 -7.25 16 28 C 0.53 6.67 6.09 -11.20 -0.07 6.60 16 29 O -0.52 -8.11 17.48 5.55 0.10 -8.01 16 30 H 0.07 1.97 6.84 -51.93 -0.36 1.61 16 31 H 0.03 0.70 7.56 -51.93 -0.39 0.31 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 34 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.08 1.48 6.92 -51.93 -0.36 1.12 16 36 H 0.05 0.86 6.44 -51.93 -0.33 0.52 16 37 H 0.09 1.38 6.32 -51.93 -0.33 1.05 16 38 H 0.09 1.21 8.11 -51.93 -0.42 0.79 16 39 H 0.08 1.19 7.57 -51.93 -0.39 0.79 16 40 H 0.09 1.17 8.04 -51.93 -0.42 0.75 16 41 H 0.09 0.67 7.97 -51.93 -0.41 0.26 16 42 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 45 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 46 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 47 H 0.41 3.81 8.80 -40.82 -0.36 3.45 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -34.44 380.19 -9.03 -43.47 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -7.02 Total: 4.56 kcal Atomic # 6 Polarization: 0.60 SS G_CDS: -3.04 Total: -2.43 kcal Atomic # 7 Polarization: -46.02 SS G_CDS: 0.14 Total: -45.88 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.18 Total: -21.77 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -34.44 -9.03 -43.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349370112.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.292 kcal (2) G-P(sol) polarization free energy of solvation -34.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds