Wall clock time and date at job start Tue Mar 31 2020 15:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46908 * 2 1 4 4 C 1.50698 * 109.47221 * 239.99763 * 2 1 3 5 5 H 1.07991 * 120.00300 * 245.45213 * 4 2 1 6 6 C 1.37882 * 119.99966 * 65.45776 * 4 2 1 7 7 N 1.31510 * 119.99889 * 9.61488 * 6 4 2 8 8 Si 1.86793 * 119.99937 * 189.61975 * 6 4 2 9 9 H 1.48502 * 109.47516 * 84.98993 * 8 6 4 10 10 H 1.48500 * 109.47186 * 204.99062 * 8 6 4 11 11 H 1.48497 * 109.47308 * 324.98736 * 8 6 4 12 12 N 1.46503 * 109.47294 * 119.99499 * 2 1 3 13 13 C 1.46501 * 119.99776 * 60.00178 * 12 2 1 14 14 C 1.34776 * 119.99976 * 240.00208 * 12 2 1 15 15 O 1.21276 * 120.00377 * 0.02562 * 14 12 2 16 16 C 1.50697 * 119.99558 * 180.02562 * 14 12 2 17 17 C 1.53001 * 109.46927 * 180.02562 * 16 14 12 18 18 C 1.53004 * 109.47245 * 179.97438 * 17 16 14 19 19 H 1.08998 * 109.41510 * 305.14835 * 18 17 16 20 20 C 1.52882 * 109.41306 * 185.35623 * 18 17 16 21 21 C 1.50699 * 109.67090 * 288.05786 * 20 18 17 22 22 C 1.38152 * 119.94342 * 147.43390 * 21 20 18 23 23 C 1.38268 * 120.04441 * 178.40783 * 22 21 20 24 24 C 1.38298 * 120.12377 * 0.02562 * 23 22 21 25 25 C 1.38075 * 120.08657 * 0.37673 * 24 23 22 26 26 C 1.38749 * 120.06118 * 326.50484 * 21 20 18 27 27 N 1.39764 * 120.22981 * 2.00084 * 26 21 20 28 28 C 1.34414 * 120.72335 * 13.64934 * 27 26 21 29 29 O 1.21283 * 119.67273 * 185.85261 * 28 27 26 30 30 H 1.09000 * 109.46989 * 63.28973 * 1 2 3 31 31 H 1.09004 * 109.46920 * 183.28847 * 1 2 3 32 32 H 1.08995 * 109.47226 * 303.28641 * 1 2 3 33 33 H 0.97001 * 120.00096 * 180.02562 * 7 6 4 34 34 H 1.08995 * 109.47418 * 270.00099 * 13 12 2 35 35 H 1.09003 * 109.46837 * 29.99913 * 13 12 2 36 36 H 1.08997 * 109.46932 * 149.99914 * 13 12 2 37 37 H 1.09000 * 109.47406 * 60.00299 * 16 14 12 38 38 H 1.09002 * 109.47502 * 300.00000 * 16 14 12 39 39 H 1.09001 * 109.47398 * 299.99906 * 17 16 14 40 40 H 1.08998 * 109.47280 * 60.00254 * 17 16 14 41 41 H 1.08995 * 109.44021 * 48.12255 * 20 18 17 42 42 H 1.09003 * 109.44079 * 168.00586 * 20 18 17 43 43 H 1.07999 * 119.97693 * 358.42674 * 22 21 20 44 44 H 1.07996 * 119.93401 * 180.02562 * 23 22 21 45 45 H 1.07999 * 119.96019 * 180.35114 * 24 23 22 46 46 H 1.07997 * 120.04049 * 179.97438 * 25 24 23 47 47 H 0.96997 * 119.63548 * 193.67616 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.5787 -1.6369 -1.1338 6 6 1.7946 -0.1775 -2.4796 7 7 1.3003 1.0359 -2.5936 8 14 2.1744 -1.1788 -4.0100 9 1 1.0215 -2.0609 -4.3233 10 1 2.4214 -0.2627 -5.1524 11 1 3.3823 -2.0090 -3.7713 12 7 2.0184 -0.6905 1.1962 13 6 1.6645 -2.0931 1.4281 14 6 2.7932 -0.0354 2.0833 15 8 3.0858 1.1258 1.8916 16 6 3.2960 -0.7459 3.3135 17 6 4.1454 0.2160 4.1467 18 6 4.6554 -0.5052 5.3960 19 1 3.8109 -0.9269 5.9410 20 6 5.3909 0.4907 6.2929 21 6 6.7105 0.8598 5.6657 22 6 7.2302 2.1268 5.8476 23 6 8.4563 2.4573 5.3006 24 6 9.1653 1.5214 4.5698 25 6 8.6471 0.2561 4.3777 26 6 7.4129 -0.0777 4.9220 27 7 6.8816 -1.3538 4.7160 28 6 5.5909 -1.6124 4.9879 29 8 5.1756 -2.7489 4.9041 30 1 -0.3633 0.4619 -0.9180 31 1 -0.3633 -1.0260 0.0590 32 1 -0.3633 0.5640 0.8590 33 1 1.1326 1.4107 -3.4724 34 1 0.7377 -2.1443 1.9994 35 1 1.5296 -2.5968 0.4709 36 1 2.4630 -2.5817 1.9865 37 1 3.9018 -1.6021 3.0166 38 1 2.4485 -1.0889 3.9070 39 1 4.9930 0.5594 3.5535 40 1 3.5393 1.0718 4.4437 41 1 4.7833 1.3875 6.4138 42 1 5.5672 0.0385 7.2689 43 1 6.6785 2.8596 6.4178 44 1 8.8610 3.4482 5.4443 45 1 10.1253 1.7806 4.1485 46 1 9.2012 -0.4741 3.8066 47 1 7.4506 -2.0607 4.3733 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349370112.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:48 Heat of formation + Delta-G solvation = -81.192483 kcal Electronic energy + Delta-G solvation = -28411.514014 eV Core-core repulsion = 24557.421473 eV Total energy + Delta-G solvation = -3854.092542 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.22852 -40.71729 -39.65270 -37.28713 -36.55674 -35.90425 -34.80465 -33.29193 -31.59949 -30.57930 -29.88542 -27.58966 -27.28732 -26.07157 -24.54543 -23.69511 -23.46913 -22.46226 -19.95325 -19.72781 -18.94228 -18.53581 -18.03196 -17.88560 -17.11787 -16.95719 -16.46186 -16.30630 -16.11154 -15.88830 -15.36967 -15.03230 -14.87054 -14.60447 -14.41417 -14.23714 -14.00356 -13.81472 -13.67805 -13.42764 -13.39457 -13.16460 -12.93205 -12.81899 -12.70651 -12.63860 -12.34163 -12.28418 -12.11501 -12.10590 -12.02876 -11.79663 -11.64004 -11.25097 -10.98582 -10.62707 -10.48325 -9.70390 -9.34041 -8.95896 -8.18865 -6.32174 0.25043 0.43581 1.39385 1.40180 1.49422 1.49823 1.80526 2.03388 2.31384 2.48466 2.88808 3.09833 3.29194 3.52752 3.65177 3.77547 3.94830 4.05462 4.12123 4.21345 4.31485 4.39955 4.45646 4.50572 4.59032 4.63991 4.70589 4.73402 4.75543 4.83944 4.86084 4.96611 4.98902 5.00923 5.04970 5.10852 5.20496 5.23112 5.45487 5.49294 5.52881 5.64545 5.65569 5.72185 5.93880 5.98996 6.12150 6.20683 6.75898 6.83176 6.92138 7.30725 7.47944 8.88013 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014404 B = 0.002967 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.482891 B = 9434.643280 C = 9934.800174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.258 3.742 3 H 0.014 0.986 4 C -0.544 4.544 5 H 0.059 0.941 6 C 0.017 3.983 7 N -0.918 5.918 8 Si 0.962 3.038 9 H -0.265 1.265 10 H -0.285 1.285 11 H -0.272 1.272 12 N -0.603 5.603 13 C 0.080 3.920 14 C 0.492 3.508 15 O -0.601 6.601 16 C -0.128 4.128 17 C -0.081 4.081 18 C -0.098 4.098 19 H 0.133 0.867 20 C -0.071 4.071 21 C -0.133 4.133 22 C -0.090 4.090 23 C -0.146 4.146 24 C -0.099 4.099 25 C -0.164 4.164 26 C 0.137 3.863 27 N -0.659 5.659 28 C 0.523 3.477 29 O -0.558 6.558 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.026 0.974 33 H 0.265 0.735 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.120 0.880 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.101 0.899 43 H 0.150 0.850 44 H 0.146 0.854 45 H 0.147 0.853 46 H 0.138 0.862 47 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.073 -2.070 21.004 24.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.156 3.844 3 H 0.032 0.968 4 C -0.582 4.582 5 H 0.077 0.923 6 C -0.183 4.183 7 N -0.556 5.556 8 Si 0.787 3.213 9 H -0.190 1.190 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.333 5.333 13 C -0.063 4.063 14 C 0.282 3.718 15 O -0.484 6.484 16 C -0.167 4.167 17 C -0.120 4.120 18 C -0.119 4.119 19 H 0.151 0.849 20 C -0.107 4.107 21 C -0.135 4.135 22 C -0.108 4.108 23 C -0.165 4.165 24 C -0.118 4.118 25 C -0.184 4.184 26 C 0.042 3.958 27 N -0.302 5.302 28 C 0.312 3.688 29 O -0.436 6.436 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.138 0.862 39 H 0.068 0.932 40 H 0.109 0.891 41 H 0.131 0.869 42 H 0.119 0.881 43 H 0.168 0.832 44 H 0.164 0.836 45 H 0.164 0.836 46 H 0.156 0.844 47 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 11.743 -1.903 20.778 23.943 hybrid contribution 0.473 -0.622 -1.652 1.828 sum 12.217 -2.525 19.126 22.835 Atomic orbital electron populations 1.21794 0.97140 0.99984 0.99469 1.18541 0.91482 0.92621 0.81729 0.96827 1.21562 1.36619 1.08564 0.91464 0.92299 1.25748 0.94972 0.95491 1.02086 1.70110 1.45441 1.15256 1.24784 0.85515 0.78881 0.78512 0.78402 1.19014 1.21071 1.19631 1.48273 1.49235 1.13262 1.22566 1.21828 1.01191 0.80722 1.02510 1.21353 0.78174 0.86818 0.85465 1.90612 1.59972 1.19537 1.78280 1.21720 1.02148 0.99117 0.93750 1.21212 0.99162 0.97700 0.93895 1.21484 0.98224 0.94216 0.97985 0.84925 1.20603 0.92233 1.00058 0.97836 1.19745 0.98086 0.94661 1.01033 1.21205 0.95922 0.94843 0.98879 1.21471 0.95377 1.00719 0.98941 1.21286 1.00643 0.92261 0.97561 1.21056 0.95435 0.99018 1.02933 1.17868 0.94737 0.84855 0.98331 1.43543 1.11300 1.11621 1.63748 1.21053 0.82581 0.90158 0.74969 1.90750 1.76215 1.24052 1.52598 0.93141 0.92832 0.95538 0.92612 0.91101 0.91320 0.90149 0.89571 0.86171 0.93203 0.89052 0.86930 0.88126 0.83211 0.83643 0.83571 0.84433 0.74866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.06 9.12 71.98 0.66 -5.41 16 2 C 0.26 13.85 2.50 44.25 0.11 13.96 16 3 H 0.01 0.88 6.84 -2.39 -0.02 0.87 16 4 C -0.54 -30.51 8.01 25.60 0.20 -30.31 16 5 H 0.06 3.23 7.16 -2.92 -0.02 3.21 16 6 C 0.02 0.96 5.17 84.66 0.44 1.40 16 7 N -0.92 -54.68 12.16 21.45 0.26 -54.42 16 8 Si 0.96 43.93 29.55 68.60 2.03 45.96 16 9 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 10 H -0.29 -12.87 7.11 99.48 0.71 -12.17 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 12 N -0.60 -26.60 2.75 -826.80 -2.28 -28.88 16 13 C 0.08 2.68 9.16 127.77 1.17 3.85 16 14 C 0.49 21.06 7.67 87.66 0.67 21.73 16 15 O -0.60 -31.17 15.31 -3.02 -0.05 -31.22 16 16 C -0.13 -3.83 4.06 29.85 0.12 -3.71 16 17 C -0.08 -2.14 3.75 30.60 0.11 -2.02 16 18 C -0.10 -1.93 2.53 -11.61 -0.03 -1.96 16 19 H 0.13 2.12 8.14 -2.39 -0.02 2.10 16 20 C -0.07 -1.04 5.41 29.81 0.16 -0.88 16 21 C -0.13 -2.41 5.10 -19.76 -0.10 -2.51 16 22 C -0.09 -1.39 9.68 22.26 0.22 -1.18 16 23 C -0.15 -2.15 10.04 22.29 0.22 -1.93 16 24 C -0.10 -1.53 10.04 22.25 0.22 -1.30 16 25 C -0.16 -2.92 9.90 22.40 0.22 -2.69 16 26 C 0.14 2.78 6.35 38.17 0.24 3.02 16 27 N -0.66 -14.08 5.35 -304.23 -1.63 -15.71 16 28 C 0.52 12.72 6.09 87.68 0.53 13.25 16 29 O -0.56 -16.86 17.48 -3.04 -0.05 -16.92 16 30 H 0.05 2.67 6.84 -2.39 -0.02 2.66 16 31 H 0.05 2.30 7.56 -2.38 -0.02 2.29 16 32 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 2.46 6.92 -2.39 -0.02 2.44 16 36 H 0.08 2.29 6.44 -2.39 -0.02 2.27 16 37 H 0.09 2.65 6.32 -2.39 -0.02 2.63 16 38 H 0.12 2.89 8.11 -2.39 -0.02 2.87 16 39 H 0.05 1.57 7.57 -2.39 -0.02 1.55 16 40 H 0.09 2.33 8.04 -2.39 -0.02 2.31 16 41 H 0.11 1.28 7.97 -2.39 -0.02 1.26 16 42 H 0.10 1.15 8.14 -2.39 -0.02 1.14 16 43 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 44 H 0.15 1.44 8.06 -2.91 -0.02 1.42 16 45 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 46 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 47 H 0.41 7.72 8.80 -92.71 -0.82 6.91 16 Total: -1.00 -77.65 380.19 3.63 -74.01 By element: Atomic # 1 Polarization: 23.68 SS G_CDS: 0.17 Total: 23.84 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 5.18 Total: 3.32 kcal Atomic # 7 Polarization: -95.36 SS G_CDS: -3.64 Total: -99.00 kcal Atomic # 8 Polarization: -48.03 SS G_CDS: -0.10 Total: -48.13 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -77.65 3.63 -74.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349370112.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.180 kcal (2) G-P(sol) polarization free energy of solvation -77.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds