Wall clock time and date at job start Tue Mar 31 2020 17:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47427 * 2 1 4 4 C 1.46501 * 119.99961 * 270.00459 * 3 2 1 5 5 C 1.53003 * 109.46913 * 278.84617 * 4 3 2 6 6 C 1.34781 * 119.99844 * 89.99401 * 3 2 1 7 7 O 1.21539 * 119.99880 * 6.83264 * 6 3 2 8 8 C 1.47963 * 119.99877 * 186.81990 * 6 3 2 9 9 C 1.39611 * 119.99184 * 137.91347 * 8 6 3 10 10 C 1.37758 * 120.00884 * 179.74645 * 9 8 6 11 11 C 1.39662 * 119.98903 * 0.25639 * 10 9 8 12 12 C 1.47850 * 120.00678 * 179.97438 * 11 10 9 13 13 O 1.21577 * 120.00386 * 139.18868 * 12 11 10 14 14 N 1.34775 * 119.99783 * 319.19086 * 12 11 10 15 15 C 1.36731 * 120.00385 * 183.19749 * 14 12 11 16 16 H 1.07998 * 119.99683 * 127.00257 * 15 14 12 17 17 C 1.39147 * 119.99606 * 307.00635 * 15 14 12 18 18 N 1.31297 * 119.99543 * 182.14873 * 17 15 14 19 19 Si 1.86794 * 120.00320 * 2.15286 * 17 15 14 20 20 H 1.48508 * 109.47088 * 94.90888 * 19 17 15 21 21 H 1.48500 * 109.47427 * 214.90926 * 19 17 15 22 22 H 1.48494 * 109.47121 * 334.91143 * 19 17 15 23 23 C 1.46508 * 120.00222 * 3.19644 * 14 12 11 24 24 C 1.52998 * 117.50224 * 189.10072 * 23 14 12 25 25 C 1.52999 * 117.49906 * 120.43891 * 23 14 12 26 26 C 1.39666 * 119.98964 * 359.97438 * 11 10 9 27 27 C 1.37752 * 119.99486 * 359.97438 * 26 11 10 28 28 H 1.08997 * 109.46713 * 59.99897 * 1 2 3 29 29 H 1.08998 * 109.47236 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47325 * 299.99913 * 1 2 3 31 31 H 1.09005 * 109.46976 * 239.99834 * 2 1 3 32 32 H 1.09005 * 109.46932 * 120.00280 * 2 1 3 33 33 H 1.08997 * 109.47623 * 38.84961 * 4 3 2 34 34 H 1.09003 * 109.46992 * 158.84897 * 4 3 2 35 35 H 1.09003 * 109.46990 * 308.49037 * 5 4 3 36 36 H 1.09000 * 109.46592 * 68.48583 * 5 4 3 37 37 H 1.08990 * 109.47204 * 188.48731 * 5 4 3 38 38 H 1.08003 * 119.99564 * 0.02633 * 9 8 6 39 39 H 1.07996 * 120.00418 * 180.27920 * 10 9 8 40 40 H 0.97008 * 119.99836 * 179.97438 * 18 17 15 41 41 H 1.09004 * 115.54761 * 334.77133 * 23 14 12 42 42 H 1.08997 * 117.49927 * 359.97438 * 24 23 14 43 43 H 1.08997 * 117.49808 * 145.02319 * 24 23 14 44 44 H 1.08998 * 117.49808 * 214.98553 * 25 23 14 45 45 H 1.08998 * 117.50182 * 359.97438 * 25 23 14 46 46 H 1.08007 * 120.00442 * 180.02562 * 26 11 10 47 47 H 1.07995 * 119.99846 * 179.97438 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6273 1.6559 -1.8214 6 6 2.2430 2.0165 1.1673 7 8 2.1605 1.4079 2.2161 8 6 2.5902 3.4548 1.1718 9 6 2.0185 4.3078 2.1177 10 6 2.3455 5.6460 2.1256 11 6 3.2450 6.1503 1.1836 12 6 3.5958 7.5866 1.1913 13 8 4.7455 7.9326 1.0005 14 7 2.6409 8.5123 1.4099 15 6 2.9522 9.8424 1.3523 16 1 2.3795 10.5041 0.7194 17 6 4.0069 10.3435 2.1092 18 7 4.2791 11.6277 2.0864 19 14 5.0353 9.1891 3.1575 20 1 6.2417 8.7730 2.3978 21 1 5.4498 9.8867 4.4012 22 1 4.2323 7.9899 3.5067 23 6 1.2693 8.0934 1.7093 24 6 0.1897 9.1771 1.7370 25 6 0.6694 8.5406 3.0438 26 6 3.8130 5.2977 0.2344 27 6 3.4864 3.9595 0.2277 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.4843 1.8046 -1.9836 34 1 2.2502 3.1492 -1.1041 35 1 4.3861 1.7835 -1.0494 36 1 3.5921 0.6101 -2.1269 37 1 3.8758 2.2775 -2.6815 38 1 1.3233 3.9176 2.8463 39 1 1.9067 6.3048 2.8602 40 1 5.0141 11.9771 2.6144 41 1 0.9857 7.1099 1.3344 42 1 0.4999 10.2019 1.5329 43 1 -0.8042 8.9066 1.3807 44 1 -0.0091 7.8516 3.5467 45 1 1.2953 9.1462 3.6993 46 1 4.5089 5.6874 -0.4939 47 1 3.9253 3.3002 -0.5065 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352737226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:33 Heat of formation + Delta-G solvation = 17.159234 kcal Electronic energy + Delta-G solvation = -28938.956314 eV Core-core repulsion = 25089.128622 eV Total energy + Delta-G solvation = -3849.827691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.73678 -39.67628 -37.76290 -36.55440 -36.50144 -33.12879 -32.93683 -31.73424 -31.05374 -30.69012 -29.72040 -25.94384 -24.30147 -23.90502 -23.08691 -22.41626 -21.87144 -21.39108 -19.65965 -19.47069 -17.83216 -17.54604 -16.71320 -16.54482 -15.78512 -15.48794 -15.23372 -14.93368 -14.77715 -14.36621 -13.96460 -13.86796 -13.55552 -13.50184 -13.39433 -13.19983 -12.94305 -12.83573 -12.72376 -12.46913 -12.45026 -12.14647 -11.92493 -11.52208 -11.43894 -11.29301 -11.15915 -11.00412 -10.79612 -10.33324 -10.12793 -10.08124 -10.00036 -9.59862 -9.06826 -9.01319 -8.84374 -8.63712 -8.53211 -7.55662 -6.29535 -4.23329 0.80498 1.42879 2.55684 2.73234 3.17783 3.43681 3.58618 3.71702 3.94088 4.19971 4.27713 4.40098 4.55432 4.63374 4.75878 4.80277 4.88584 4.96908 4.98549 5.04477 5.07180 5.14494 5.25777 5.29906 5.38191 5.44811 5.46100 5.49518 5.52347 5.58483 5.62542 5.66685 5.78020 5.84610 5.90561 6.06542 6.12872 6.17492 6.26630 6.33398 6.37817 6.58692 6.64245 6.83849 6.89593 7.12050 7.68227 7.92105 7.98010 8.57676 8.69604 9.22943 9.59465 10.71177 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018971 B = 0.003437 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.547229 B = 8144.348980 C = 8639.431448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.110 3.890 3 N -0.610 5.610 4 C 0.086 3.914 5 C -0.179 4.179 6 C 0.565 3.435 7 O -0.535 6.535 8 C -0.133 4.133 9 C -0.072 4.072 10 C -0.107 4.107 11 C -0.077 4.077 12 C 0.492 3.508 13 O -0.540 6.540 14 N -0.421 5.421 15 C -0.340 4.340 16 H 0.100 0.900 17 C 0.081 3.919 18 N -0.866 5.866 19 Si 0.948 3.052 20 H -0.266 1.266 21 H -0.320 1.320 22 H -0.289 1.289 23 C 0.053 3.947 24 C -0.171 4.171 25 C -0.196 4.196 26 C -0.084 4.084 27 C -0.111 4.111 28 H 0.056 0.944 29 H 0.065 0.935 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.065 0.935 36 H 0.060 0.940 37 H 0.074 0.926 38 H 0.131 0.869 39 H 0.142 0.858 40 H 0.275 0.725 41 H 0.119 0.881 42 H 0.112 0.888 43 H 0.088 0.912 44 H 0.089 0.911 45 H 0.099 0.901 46 H 0.137 0.863 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.428 -20.015 -6.497 22.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 N -0.343 5.343 4 C -0.036 4.036 5 C -0.236 4.236 6 C 0.354 3.646 7 O -0.412 6.412 8 C -0.137 4.137 9 C -0.091 4.091 10 C -0.126 4.126 11 C -0.080 4.080 12 C 0.284 3.716 13 O -0.425 6.425 14 N -0.139 5.139 15 C -0.466 4.466 16 H 0.117 0.883 17 C -0.129 4.129 18 N -0.500 5.500 19 Si 0.783 3.217 20 H -0.193 1.193 21 H -0.251 1.251 22 H -0.215 1.215 23 C -0.053 4.053 24 C -0.209 4.209 25 C -0.234 4.234 26 C -0.103 4.103 27 C -0.129 4.129 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.118 0.882 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.149 0.851 39 H 0.159 0.841 40 H 0.085 0.915 41 H 0.136 0.864 42 H 0.130 0.870 43 H 0.106 0.894 44 H 0.107 0.893 45 H 0.118 0.882 46 H 0.155 0.845 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.813 -19.963 -6.015 22.266 hybrid contribution 0.484 -0.421 0.474 0.797 sum -7.329 -20.384 -5.542 22.359 Atomic orbital electron populations 1.22134 0.95818 1.02194 1.02442 1.21410 0.94364 0.82203 1.03230 1.47917 1.66125 1.14236 1.06021 1.22022 0.97368 0.99305 0.84943 1.22327 0.97229 1.02353 1.01741 1.18515 0.76031 0.86761 0.83267 1.90762 1.51611 1.67475 1.31333 1.19832 1.01905 0.92815 0.99105 1.21032 0.98973 0.92510 0.96581 1.21649 0.96866 0.95258 0.98798 1.20582 0.96127 0.95369 0.95959 1.18434 0.86949 0.84797 0.81433 1.90434 1.19093 1.80399 1.52578 1.42998 1.05378 1.05993 1.59505 1.18790 1.18896 0.81094 1.27803 0.88294 1.25608 0.96670 0.95653 0.94963 1.69628 1.28726 1.12806 1.38797 0.85570 0.81844 0.78513 0.75788 1.19305 1.25145 1.21544 1.22142 0.84873 0.97731 1.00519 1.23171 0.96881 1.00216 1.00625 1.23304 1.03846 1.04511 0.91781 1.21158 0.98459 0.92309 0.98379 1.21698 0.97521 0.95805 0.97924 0.92504 0.91567 0.92220 0.90565 0.89713 0.90477 0.88152 0.91656 0.92057 0.90756 0.85105 0.84078 0.91484 0.86374 0.87016 0.89409 0.89292 0.88216 0.84542 0.84031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.26 10.24 37.16 0.38 -0.88 16 2 C 0.11 0.92 6.19 -4.04 -0.03 0.89 16 3 N -0.61 -6.14 2.48 -174.75 -0.43 -6.57 16 4 C 0.09 0.66 5.59 -4.04 -0.02 0.64 16 5 C -0.18 -1.17 9.06 37.16 0.34 -0.83 16 6 C 0.56 7.66 7.31 -12.27 -0.09 7.57 16 7 O -0.53 -8.92 16.50 5.33 0.09 -8.83 16 8 C -0.13 -1.85 5.25 -104.89 -0.55 -2.40 16 9 C -0.07 -1.04 9.64 -39.24 -0.38 -1.42 16 10 C -0.11 -1.75 7.42 -39.23 -0.29 -2.04 16 11 C -0.08 -1.44 5.27 -104.90 -0.55 -2.00 16 12 C 0.49 11.65 5.11 -12.33 -0.06 11.59 16 13 O -0.54 -14.76 12.13 5.30 0.06 -14.70 16 14 N -0.42 -9.87 2.49 -108.80 -0.27 -10.14 16 15 C -0.34 -9.23 8.35 -15.03 -0.13 -9.36 16 16 H 0.10 2.81 7.37 -52.49 -0.39 2.43 16 17 C 0.08 2.32 5.32 -17.44 -0.09 2.23 16 18 N -0.87 -25.66 13.95 55.51 0.77 -24.89 16 19 Si 0.95 25.61 24.19 -169.99 -4.11 21.50 16 20 H -0.27 -7.61 6.65 56.52 0.38 -7.23 16 21 H -0.32 -8.47 7.11 56.52 0.40 -8.07 16 22 H -0.29 -7.59 6.38 56.52 0.36 -7.23 16 23 C 0.05 0.96 4.41 -67.93 -0.30 0.66 16 24 C -0.17 -2.87 9.85 -26.69 -0.26 -3.13 16 25 C -0.20 -3.28 9.65 -26.69 -0.26 -3.53 16 26 C -0.08 -1.33 9.63 -39.23 -0.38 -1.71 16 27 C -0.11 -1.45 7.34 -39.25 -0.29 -1.73 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.46 8.01 -51.93 -0.42 0.04 16 32 H 0.08 0.83 7.34 -51.93 -0.38 0.45 16 33 H 0.08 0.46 8.13 -51.93 -0.42 0.04 16 34 H 0.10 0.87 4.71 -51.93 -0.24 0.62 16 35 H 0.06 0.51 6.71 -51.93 -0.35 0.16 16 36 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.13 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.14 2.29 5.69 -52.49 -0.30 1.99 16 40 H 0.28 7.71 8.31 -40.82 -0.34 7.37 16 41 H 0.12 1.88 5.71 -51.93 -0.30 1.58 16 42 H 0.11 2.16 6.70 -51.93 -0.35 1.81 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 46 H 0.14 2.10 8.06 -52.48 -0.42 1.68 16 47 H 0.14 1.45 3.54 -52.49 -0.19 1.26 16 LS Contribution 370.91 15.07 5.59 5.59 Total: -1.00 -34.27 370.91 -8.01 -42.29 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -6.75 Total: 1.20 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -2.96 Total: -5.45 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.07 Total: -41.60 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: 0.15 Total: -23.53 kcal Atomic # 14 Polarization: 25.61 SS G_CDS: -4.11 Total: 21.50 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.27 -8.01 -42.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352737226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.447 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds