Wall clock time and date at job start Tue Mar 31 2020 17:01:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47427 * 2 1 4 4 C 1.46501 * 119.99961 * 270.00459 * 3 2 1 5 5 C 1.53003 * 109.46913 * 278.84617 * 4 3 2 6 6 C 1.34781 * 119.99844 * 89.99401 * 3 2 1 7 7 O 1.21539 * 119.99880 * 6.83264 * 6 3 2 8 8 C 1.47963 * 119.99877 * 186.81990 * 6 3 2 9 9 C 1.39611 * 119.99184 * 137.91347 * 8 6 3 10 10 C 1.37758 * 120.00884 * 179.74645 * 9 8 6 11 11 C 1.39662 * 119.98903 * 0.25639 * 10 9 8 12 12 C 1.47850 * 120.00678 * 179.97438 * 11 10 9 13 13 O 1.21577 * 120.00386 * 139.18868 * 12 11 10 14 14 N 1.34775 * 119.99783 * 319.19086 * 12 11 10 15 15 C 1.36731 * 120.00385 * 183.19749 * 14 12 11 16 16 H 1.07998 * 119.99683 * 127.00257 * 15 14 12 17 17 C 1.39147 * 119.99606 * 307.00635 * 15 14 12 18 18 N 1.31297 * 119.99543 * 182.14873 * 17 15 14 19 19 Si 1.86794 * 120.00320 * 2.15286 * 17 15 14 20 20 H 1.48508 * 109.47088 * 94.90888 * 19 17 15 21 21 H 1.48500 * 109.47427 * 214.90926 * 19 17 15 22 22 H 1.48494 * 109.47121 * 334.91143 * 19 17 15 23 23 C 1.46508 * 120.00222 * 3.19644 * 14 12 11 24 24 C 1.52998 * 117.50224 * 189.10072 * 23 14 12 25 25 C 1.52999 * 117.49906 * 120.43891 * 23 14 12 26 26 C 1.39666 * 119.98964 * 359.97438 * 11 10 9 27 27 C 1.37752 * 119.99486 * 359.97438 * 26 11 10 28 28 H 1.08997 * 109.46713 * 59.99897 * 1 2 3 29 29 H 1.08998 * 109.47236 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47325 * 299.99913 * 1 2 3 31 31 H 1.09005 * 109.46976 * 239.99834 * 2 1 3 32 32 H 1.09005 * 109.46932 * 120.00280 * 2 1 3 33 33 H 1.08997 * 109.47623 * 38.84961 * 4 3 2 34 34 H 1.09003 * 109.46992 * 158.84897 * 4 3 2 35 35 H 1.09003 * 109.46990 * 308.49037 * 5 4 3 36 36 H 1.09000 * 109.46592 * 68.48583 * 5 4 3 37 37 H 1.08990 * 109.47204 * 188.48731 * 5 4 3 38 38 H 1.08003 * 119.99564 * 0.02633 * 9 8 6 39 39 H 1.07996 * 120.00418 * 180.27920 * 10 9 8 40 40 H 0.97008 * 119.99836 * 179.97438 * 18 17 15 41 41 H 1.09004 * 115.54761 * 334.77133 * 23 14 12 42 42 H 1.08997 * 117.49927 * 359.97438 * 24 23 14 43 43 H 1.08997 * 117.49808 * 145.02319 * 24 23 14 44 44 H 1.08998 * 117.49808 * 214.98553 * 25 23 14 45 45 H 1.08998 * 117.50182 * 359.97438 * 25 23 14 46 46 H 1.08007 * 120.00442 * 180.02562 * 26 11 10 47 47 H 1.07995 * 119.99846 * 179.97438 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6273 1.6559 -1.8214 6 6 2.2430 2.0165 1.1673 7 8 2.1605 1.4079 2.2161 8 6 2.5902 3.4548 1.1718 9 6 2.0185 4.3078 2.1177 10 6 2.3455 5.6460 2.1256 11 6 3.2450 6.1503 1.1836 12 6 3.5958 7.5866 1.1913 13 8 4.7455 7.9326 1.0005 14 7 2.6409 8.5123 1.4099 15 6 2.9522 9.8424 1.3523 16 1 2.3795 10.5041 0.7194 17 6 4.0069 10.3435 2.1092 18 7 4.2791 11.6277 2.0864 19 14 5.0353 9.1891 3.1575 20 1 6.2417 8.7730 2.3978 21 1 5.4498 9.8867 4.4012 22 1 4.2323 7.9899 3.5067 23 6 1.2693 8.0934 1.7093 24 6 0.1897 9.1771 1.7370 25 6 0.6694 8.5406 3.0438 26 6 3.8130 5.2977 0.2344 27 6 3.4864 3.9595 0.2277 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.4843 1.8046 -1.9836 34 1 2.2502 3.1492 -1.1041 35 1 4.3861 1.7835 -1.0494 36 1 3.5921 0.6101 -2.1269 37 1 3.8758 2.2775 -2.6815 38 1 1.3233 3.9176 2.8463 39 1 1.9067 6.3048 2.8602 40 1 5.0141 11.9771 2.6144 41 1 0.9857 7.1099 1.3344 42 1 0.4999 10.2019 1.5329 43 1 -0.8042 8.9066 1.3807 44 1 -0.0091 7.8516 3.5467 45 1 1.2953 9.1462 3.6993 46 1 4.5089 5.6874 -0.4939 47 1 3.9253 3.3002 -0.5065 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352737226.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:01:32 Heat of formation + Delta-G solvation = -4.222599 kcal Electronic energy + Delta-G solvation = -28939.883500 eV Core-core repulsion = 25089.128622 eV Total energy + Delta-G solvation = -3850.754877 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.91428 -41.15719 -39.06478 -38.20509 -37.40351 -35.06003 -33.93887 -33.40125 -32.29127 -31.82294 -30.50696 -27.63439 -25.66766 -24.56359 -24.19017 -23.70654 -23.16396 -22.79570 -21.38591 -20.40049 -19.54734 -18.49014 -18.24178 -17.61780 -17.44506 -16.92330 -16.40449 -16.26765 -16.04720 -15.55296 -15.28295 -15.18915 -14.98609 -14.82078 -14.75872 -14.57953 -14.16002 -13.85596 -13.69859 -13.56733 -13.45442 -13.37823 -12.96195 -12.83077 -12.59289 -12.48308 -12.28454 -12.16560 -12.05630 -12.00448 -11.90386 -11.61330 -11.28532 -11.15217 -10.98338 -10.53491 -10.12629 -9.94178 -9.75164 -9.41955 -8.48947 -6.41171 -0.45558 0.24535 1.13406 1.23003 1.40197 1.52518 1.85137 1.95637 2.32437 2.46438 2.68034 2.84620 3.16734 3.31781 3.64377 3.75092 3.83903 4.00966 4.02118 4.12100 4.16581 4.20223 4.23724 4.26115 4.34793 4.43395 4.51159 4.56204 4.61362 4.76152 4.85970 4.86645 4.90925 4.92680 4.99391 5.03529 5.09643 5.17036 5.21629 5.28094 5.31442 5.39057 5.45475 5.56033 5.59347 5.68581 5.83707 6.24932 6.59868 6.73938 7.00389 7.14539 7.65877 8.55194 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018971 B = 0.003437 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.547229 B = 8144.348980 C = 8639.431448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.105 3.895 3 N -0.599 5.599 4 C 0.080 3.920 5 C -0.178 4.178 6 C 0.561 3.439 7 O -0.572 6.572 8 C -0.125 4.125 9 C -0.068 4.068 10 C -0.102 4.102 11 C -0.105 4.105 12 C 0.491 3.509 13 O -0.587 6.587 14 N -0.436 5.436 15 C -0.329 4.329 16 H 0.077 0.923 17 C 0.040 3.960 18 N -0.906 5.906 19 Si 0.991 3.009 20 H -0.295 1.295 21 H -0.316 1.316 22 H -0.281 1.281 23 C 0.035 3.965 24 C -0.163 4.163 25 C -0.184 4.184 26 C -0.085 4.085 27 C -0.090 4.090 28 H 0.067 0.933 29 H 0.083 0.917 30 H 0.035 0.965 31 H 0.107 0.893 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.092 0.908 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.148 0.852 39 H 0.143 0.857 40 H 0.276 0.724 41 H 0.150 0.850 42 H 0.077 0.923 43 H 0.131 0.869 44 H 0.135 0.865 45 H 0.068 0.932 46 H 0.136 0.864 47 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.545 -23.987 -7.600 27.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.016 4.016 3 N -0.331 5.331 4 C -0.042 4.042 5 C -0.236 4.236 6 C 0.350 3.650 7 O -0.452 6.452 8 C -0.129 4.129 9 C -0.086 4.086 10 C -0.121 4.121 11 C -0.109 4.109 12 C 0.283 3.717 13 O -0.475 6.475 14 N -0.154 5.154 15 C -0.456 4.456 16 H 0.094 0.906 17 C -0.164 4.164 18 N -0.543 5.543 19 Si 0.826 3.174 20 H -0.224 1.224 21 H -0.248 1.248 22 H -0.207 1.207 23 C -0.069 4.069 24 C -0.201 4.201 25 C -0.222 4.222 26 C -0.104 4.104 27 C -0.108 4.108 28 H 0.086 0.914 29 H 0.101 0.899 30 H 0.054 0.946 31 H 0.125 0.875 32 H 0.085 0.915 33 H 0.122 0.878 34 H 0.110 0.890 35 H 0.070 0.930 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.166 0.834 39 H 0.161 0.839 40 H 0.086 0.914 41 H 0.167 0.833 42 H 0.096 0.904 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.087 0.913 46 H 0.154 0.846 47 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -9.983 -23.954 -7.143 26.916 hybrid contribution 1.052 0.584 0.643 1.364 sum -8.932 -23.370 -6.500 25.850 Atomic orbital electron populations 1.22092 0.95010 1.03189 1.01776 1.21611 0.94983 0.81108 1.03906 1.48042 1.64385 1.14832 1.05807 1.22245 0.99104 0.98580 0.84229 1.22325 0.95812 1.03635 1.01787 1.18457 0.76228 0.86440 0.83843 1.90756 1.53629 1.68004 1.32834 1.20086 1.01010 0.93325 0.98450 1.21174 0.98998 0.91582 0.96867 1.21585 0.96252 0.96081 0.98159 1.20263 0.99111 0.92605 0.98905 1.19184 0.86056 0.86961 0.79450 1.90378 1.21134 1.81712 1.54316 1.43170 1.07621 1.04645 1.59942 1.18622 1.17833 0.82781 1.26408 0.90563 1.26086 0.97795 0.96236 0.96322 1.69681 1.30021 1.13694 1.40925 0.84879 0.79985 0.77776 0.74721 1.22381 1.24778 1.20671 1.22466 0.82345 0.99595 1.02502 1.23210 0.98199 0.97987 1.00692 1.23366 1.03490 1.04407 0.90978 1.21232 0.98181 0.93132 0.97854 1.21911 0.96312 0.94704 0.97834 0.91360 0.89864 0.94566 0.87451 0.91478 0.87849 0.89044 0.92957 0.90725 0.89236 0.83386 0.83891 0.91443 0.83286 0.90426 0.85108 0.84749 0.91338 0.84599 0.81021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 10.24 71.98 0.74 -1.17 16 2 C 0.11 1.39 6.19 86.38 0.53 1.93 16 3 N -0.60 -9.94 2.48 -825.07 -2.05 -11.99 16 4 C 0.08 0.88 5.59 86.38 0.48 1.36 16 5 C -0.18 -1.56 9.06 71.98 0.65 -0.91 16 6 C 0.56 13.67 7.31 86.82 0.63 14.31 16 7 O -0.57 -18.01 16.50 -3.84 -0.06 -18.08 16 8 C -0.13 -3.11 5.25 -20.04 -0.11 -3.21 16 9 C -0.07 -1.76 9.64 22.49 0.22 -1.54 16 10 C -0.10 -3.12 7.42 22.50 0.17 -2.95 16 11 C -0.11 -3.85 5.27 -20.04 -0.11 -3.96 16 12 C 0.49 23.48 5.11 86.79 0.44 23.92 16 13 O -0.59 -33.11 12.13 -3.96 -0.05 -33.16 16 14 N -0.44 -20.71 2.49 -616.39 -1.53 -22.24 16 15 C -0.33 -18.59 8.35 84.15 0.70 -17.89 16 16 H 0.08 4.58 7.37 -2.91 -0.02 4.56 16 17 C 0.04 2.42 5.32 84.99 0.45 2.87 16 18 N -0.91 -56.29 13.95 21.70 0.30 -55.99 16 19 Si 0.99 54.88 24.19 68.60 1.66 56.54 16 20 H -0.30 -17.56 6.65 99.48 0.66 -16.90 16 21 H -0.32 -16.92 7.11 99.48 0.71 -16.21 16 22 H -0.28 -14.83 6.38 99.48 0.64 -14.20 16 23 C 0.03 1.22 4.41 44.99 0.20 1.42 16 24 C -0.16 -5.22 9.85 30.62 0.30 -4.91 16 25 C -0.18 -5.80 9.65 30.62 0.30 -5.51 16 26 C -0.09 -2.56 9.63 22.50 0.22 -2.35 16 27 C -0.09 -2.07 7.34 22.49 0.17 -1.91 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.11 0.78 8.01 -2.38 -0.02 0.76 16 32 H 0.07 1.17 7.34 -2.38 -0.02 1.15 16 33 H 0.10 0.69 8.13 -2.39 -0.02 0.67 16 34 H 0.09 1.20 4.71 -2.39 -0.01 1.19 16 35 H 0.05 0.62 6.71 -2.39 -0.02 0.60 16 36 H 0.07 0.50 8.08 -2.39 -0.02 0.48 16 37 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 39 H 0.14 4.29 5.69 -2.91 -0.02 4.28 16 40 H 0.28 16.22 8.31 -92.70 -0.77 15.45 16 41 H 0.15 4.32 5.71 -2.39 -0.01 4.30 16 42 H 0.08 3.05 6.70 -2.39 -0.02 3.03 16 43 H 0.13 3.04 8.14 -2.39 -0.02 3.02 16 44 H 0.13 3.02 8.14 -2.39 -0.02 3.00 16 45 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 46 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 47 H 0.17 2.90 3.54 -2.91 -0.01 2.89 16 Total: -1.00 -80.01 370.91 5.13 -74.88 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: 0.87 Total: 10.53 kcal Atomic # 6 Polarization: -6.49 SS G_CDS: 5.99 Total: -0.50 kcal Atomic # 7 Polarization: -86.95 SS G_CDS: -3.28 Total: -90.23 kcal Atomic # 8 Polarization: -51.13 SS G_CDS: -0.11 Total: -51.24 kcal Atomic # 14 Polarization: 54.88 SS G_CDS: 1.66 Total: 56.54 kcal Total: -80.01 5.13 -74.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352737226.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.662 kcal (2) G-P(sol) polarization free energy of solvation -80.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds