Wall clock time and date at job start Tue Mar 31 2020 15:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 C 1.53001 * 109.47364 * 180.02562 * 17 16 14 19 19 C 1.50693 * 109.47768 * 180.02562 * 18 17 16 20 20 C 1.38302 * 120.08672 * 89.99458 * 19 18 17 21 21 C 1.37944 * 120.37391 * 179.97438 * 20 19 18 22 22 C 1.39366 * 120.13233 * 0.02562 * 21 20 19 23 23 C 1.38904 * 118.94591 * 0.02562 * 22 21 20 24 24 C 1.37685 * 120.80752 * 359.69531 * 23 22 21 25 25 C 1.51134 * 106.34357 * 180.02562 * 23 22 21 26 26 C 1.51389 * 104.06950 * 359.97438 * 25 23 22 27 27 O 1.21283 * 126.44621 * 180.02562 * 26 25 23 28 28 N 1.34377 * 107.11298 * 0.02562 * 26 25 23 29 29 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 31 31 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 34 34 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 35 35 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 36 36 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 37 37 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 38 38 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 39 39 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 40 40 H 1.09000 * 109.47119 * 300.00449 * 18 17 16 41 41 H 1.09000 * 109.47172 * 59.99876 * 18 17 16 42 42 H 1.07992 * 119.81645 * 0.02562 * 20 19 18 43 43 H 1.07998 * 119.93440 * 180.02562 * 21 20 19 44 44 H 1.07989 * 120.04804 * 180.32378 * 24 23 22 45 45 H 1.08991 * 110.51171 * 118.64560 * 25 23 22 46 46 H 1.09001 * 110.50841 * 241.21698 * 25 23 22 47 47 H 0.97003 * 123.87879 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 6 4.6562 -0.5054 -5.3955 19 6 5.4943 0.4415 -6.2152 20 6 6.8565 0.5309 -5.9937 21 6 7.6294 1.3953 -6.7410 22 6 7.0410 2.1864 -7.7260 23 6 5.6718 2.0882 -7.9381 24 6 4.9035 1.2205 -7.1948 25 6 5.3436 3.0551 -9.0524 26 6 6.6786 3.6746 -9.4071 27 8 6.8799 4.5132 -10.2599 28 7 7.5987 3.1208 -8.5994 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 0.7089 1.1611 3.4845 33 1 0.7376 -2.1442 -1.9996 34 1 2.4629 -2.5817 -1.9866 35 1 1.5295 -2.5968 -0.4711 36 1 3.9016 -1.6021 -3.0168 37 1 2.4483 -1.0887 -3.9070 38 1 3.5409 1.0721 -4.4431 39 1 4.9938 0.5582 -3.5525 40 1 5.2615 -1.3620 -5.0989 41 1 3.8085 -0.8476 -5.9890 42 1 7.3180 -0.0799 -5.2320 43 1 8.6926 1.4591 -6.5623 44 1 3.8408 1.1502 -7.3735 45 1 4.9290 2.5240 -9.9091 46 1 4.6473 3.8177 -8.7035 47 1 8.5422 3.3447 -8.6211 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354876421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:25 Heat of formation + Delta-G solvation = -51.997578 kcal Electronic energy + Delta-G solvation = -26876.427946 eV Core-core repulsion = 23023.601390 eV Total energy + Delta-G solvation = -3852.826556 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.73141 -39.23518 -38.84289 -36.63606 -35.38455 -34.05006 -32.82222 -32.62796 -30.65098 -29.30364 -28.44895 -26.56940 -25.97209 -25.21004 -23.07398 -22.42430 -21.48883 -20.99951 -20.49393 -18.25048 -18.20501 -17.03531 -16.60710 -16.36598 -16.11366 -15.81681 -15.54432 -15.09473 -14.95267 -14.54688 -14.26622 -13.95194 -13.70310 -13.60378 -13.36752 -13.05213 -12.91896 -12.64036 -12.48949 -12.41172 -11.87207 -11.79328 -11.65281 -11.49027 -11.26782 -11.06976 -11.03917 -10.85110 -10.83072 -10.64432 -10.59821 -10.52092 -10.25686 -10.16364 -9.18772 -9.17807 -8.88153 -8.42113 -8.22587 -7.56336 -6.07265 -4.15364 0.83221 1.02002 2.10009 2.63996 3.26825 3.32275 3.33137 3.41968 3.44750 3.74525 3.99758 4.05075 4.39249 4.48407 4.62182 4.86220 4.87011 4.98760 5.05287 5.08881 5.15655 5.23607 5.27828 5.43052 5.46377 5.62061 5.66327 5.70414 5.73559 5.79836 5.88508 6.02303 6.03658 6.17641 6.26211 6.37341 6.39645 6.43449 6.45849 6.69293 6.76091 6.84389 7.07807 7.44679 7.55120 7.57722 7.72383 8.02551 8.21095 8.56647 8.83841 9.10149 9.51096 10.97935 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.023014 B = 0.001890 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.379049 B =14809.832292 C =14843.562120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.257 3.743 3 H 0.062 0.938 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.286 1.286 10 H -0.277 1.277 11 H -0.277 1.277 12 N -0.596 5.596 13 C 0.084 3.916 14 C 0.500 3.500 15 O -0.555 6.555 16 C -0.139 4.139 17 C -0.097 4.097 18 C -0.079 4.079 19 C -0.090 4.090 20 C -0.081 4.081 21 C -0.133 4.133 22 C 0.128 3.872 23 C -0.140 4.140 24 C -0.063 4.063 25 C -0.115 4.115 26 C 0.528 3.472 27 O -0.509 6.509 28 N -0.660 5.660 29 H 0.029 0.971 30 H 0.092 0.908 31 H 0.010 0.990 32 H 0.264 0.736 33 H 0.041 0.959 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.132 0.868 43 H 0.126 0.874 44 H 0.130 0.870 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.940 -4.319 -21.086 23.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.157 3.843 3 H 0.080 0.920 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.726 3.274 9 H -0.212 1.212 10 H -0.203 1.203 11 H -0.203 1.203 12 N -0.327 5.327 13 C -0.060 4.060 14 C 0.287 3.713 15 O -0.434 6.434 16 C -0.180 4.180 17 C -0.135 4.135 18 C -0.116 4.116 19 C -0.091 4.091 20 C -0.100 4.100 21 C -0.154 4.154 22 C 0.032 3.968 23 C -0.143 4.143 24 C -0.082 4.082 25 C -0.154 4.154 26 C 0.317 3.683 27 O -0.384 6.384 28 N -0.303 5.303 29 H 0.048 0.952 30 H 0.111 0.889 31 H 0.029 0.971 32 H 0.074 0.926 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.092 0.908 42 H 0.150 0.850 43 H 0.144 0.856 44 H 0.148 0.852 45 H 0.140 0.860 46 H 0.142 0.858 47 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 8.985 -3.086 -21.347 23.366 hybrid contribution 0.801 -0.514 1.009 1.387 sum 9.786 -3.601 -20.338 22.856 Atomic orbital electron populations 1.22076 0.98293 0.99314 1.00722 1.18909 0.90817 0.94541 0.80071 0.91986 1.21283 1.31836 1.12986 0.90358 0.92348 1.24909 0.94984 0.95004 0.98976 1.69873 1.36291 1.22554 1.23835 0.86553 0.79218 0.79551 0.82031 1.21184 1.20252 1.20270 1.48260 1.49169 1.11604 1.23659 1.21584 0.98710 0.83420 1.02262 1.20471 0.79155 0.87203 0.84445 1.90646 1.58462 1.17314 1.77010 1.21703 1.00770 0.99711 0.95767 1.21312 1.00004 0.97900 0.94314 1.20635 0.98644 0.96549 0.95760 1.19843 0.94009 0.98542 0.96705 1.20835 0.93213 0.97609 0.98309 1.20353 1.00280 0.98166 0.96559 1.18120 0.92800 0.92583 0.93303 1.19750 0.93112 1.00995 1.00402 1.20186 0.99659 0.94120 0.94200 1.21050 0.96794 0.98892 0.98678 1.20636 0.87417 0.80548 0.79737 1.90820 1.84003 1.31418 1.32189 1.43729 1.11931 1.39514 1.35112 0.95227 0.88917 0.97093 0.92640 0.94013 0.92778 0.90249 0.89517 0.89674 0.91127 0.91034 0.90748 0.90805 0.84979 0.85646 0.85182 0.85961 0.85799 0.75021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 8.97 37.16 0.33 -3.14 16 2 C 0.26 6.53 2.64 -69.09 -0.18 6.34 16 3 H 0.06 1.84 6.90 -51.93 -0.36 1.48 16 4 C -0.53 -14.08 7.99 -34.44 -0.28 -14.36 16 5 H 0.06 1.53 7.33 -52.49 -0.38 1.14 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.89 -25.05 11.32 55.43 0.63 -24.43 16 8 Si 0.90 20.86 29.54 -169.99 -5.02 15.84 16 9 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 12 N -0.60 -12.39 2.75 -175.26 -0.48 -12.87 16 13 C 0.08 1.35 9.24 59.85 0.55 1.90 16 14 C 0.50 9.90 7.67 -10.99 -0.08 9.81 16 15 O -0.56 -13.38 15.31 5.56 0.09 -13.30 16 16 C -0.14 -1.82 4.25 -27.89 -0.12 -1.94 16 17 C -0.10 -1.17 4.49 -26.73 -0.12 -1.29 16 18 C -0.08 -0.65 5.35 -27.89 -0.15 -0.80 16 19 C -0.09 -0.78 5.14 -104.54 -0.54 -1.32 16 20 C -0.08 -0.67 9.68 -39.67 -0.38 -1.05 16 21 C -0.13 -1.04 10.07 -39.27 -0.40 -1.44 16 22 C 0.13 1.10 7.11 -83.69 -0.60 0.50 16 23 C -0.14 -1.18 6.35 -104.36 -0.66 -1.84 16 24 C -0.06 -0.53 9.70 -39.72 -0.39 -0.91 16 25 C -0.12 -0.84 6.88 -28.48 -0.20 -1.04 16 26 C 0.53 5.12 8.71 -10.83 -0.09 5.03 16 27 O -0.51 -6.67 18.03 5.55 0.10 -6.57 16 28 N -0.66 -5.31 5.88 -9.70 -0.06 -5.37 16 29 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 30 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 31 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 0.68 6.44 -51.92 -0.33 0.34 16 35 H 0.08 1.37 7.02 -51.93 -0.36 1.01 16 36 H 0.09 0.98 7.40 -51.93 -0.38 0.60 16 37 H 0.08 0.93 8.11 -51.93 -0.42 0.51 16 38 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 39 H 0.07 0.98 8.10 -51.93 -0.42 0.56 16 40 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 41 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 42 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 44 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 45 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.12 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.41 2.50 8.96 -40.82 -0.37 2.13 16 LS Contribution 387.01 15.07 5.83 5.83 Total: -1.00 -34.02 387.01 -9.41 -43.42 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -7.10 Total: 1.35 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -3.39 Total: -3.91 kcal Atomic # 7 Polarization: -42.75 SS G_CDS: 0.09 Total: -42.66 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: 0.19 Total: -19.87 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -34.02 -9.41 -43.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354876421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.577 kcal (2) G-P(sol) polarization free energy of solvation -34.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds