Wall clock time and date at job start Tue Mar 31 2020 15:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 C 1.53001 * 109.47364 * 180.02562 * 17 16 14 19 19 C 1.50693 * 109.47768 * 180.02562 * 18 17 16 20 20 C 1.38302 * 120.08672 * 89.99458 * 19 18 17 21 21 C 1.37944 * 120.37391 * 179.97438 * 20 19 18 22 22 C 1.39366 * 120.13233 * 0.02562 * 21 20 19 23 23 C 1.38904 * 118.94591 * 0.02562 * 22 21 20 24 24 C 1.37685 * 120.80752 * 359.69531 * 23 22 21 25 25 C 1.51134 * 106.34357 * 180.02562 * 23 22 21 26 26 C 1.51389 * 104.06950 * 359.97438 * 25 23 22 27 27 O 1.21283 * 126.44621 * 180.02562 * 26 25 23 28 28 N 1.34377 * 107.11298 * 0.02562 * 26 25 23 29 29 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 31 31 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 32 32 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 33 33 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 34 34 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 35 35 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 36 36 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 37 37 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 38 38 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 39 39 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 40 40 H 1.09000 * 109.47119 * 300.00449 * 18 17 16 41 41 H 1.09000 * 109.47172 * 59.99876 * 18 17 16 42 42 H 1.07992 * 119.81645 * 0.02562 * 20 19 18 43 43 H 1.07998 * 119.93440 * 180.02562 * 21 20 19 44 44 H 1.07989 * 120.04804 * 180.32378 * 24 23 22 45 45 H 1.08991 * 110.51171 * 118.64560 * 25 23 22 46 46 H 1.09001 * 110.50841 * 241.21698 * 25 23 22 47 47 H 0.97003 * 123.87879 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 6 4.6562 -0.5054 -5.3955 19 6 5.4943 0.4415 -6.2152 20 6 6.8565 0.5309 -5.9937 21 6 7.6294 1.3953 -6.7410 22 6 7.0410 2.1864 -7.7260 23 6 5.6718 2.0882 -7.9381 24 6 4.9035 1.2205 -7.1948 25 6 5.3436 3.0551 -9.0524 26 6 6.6786 3.6746 -9.4071 27 8 6.8799 4.5132 -10.2599 28 7 7.5987 3.1208 -8.5994 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 0.7089 1.1611 3.4845 33 1 0.7376 -2.1442 -1.9996 34 1 2.4629 -2.5817 -1.9866 35 1 1.5295 -2.5968 -0.4711 36 1 3.9016 -1.6021 -3.0168 37 1 2.4483 -1.0887 -3.9070 38 1 3.5409 1.0721 -4.4431 39 1 4.9938 0.5582 -3.5525 40 1 5.2615 -1.3620 -5.0989 41 1 3.8085 -0.8476 -5.9890 42 1 7.3180 -0.0799 -5.2320 43 1 8.6926 1.4591 -6.5623 44 1 3.8408 1.1502 -7.3735 45 1 4.9290 2.5240 -9.9091 46 1 4.6473 3.8177 -8.7035 47 1 8.5422 3.3447 -8.6211 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354876421.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:24 Heat of formation + Delta-G solvation = -73.050383 kcal Electronic energy + Delta-G solvation = -26877.340864 eV Core-core repulsion = 23023.601390 eV Total energy + Delta-G solvation = -3853.739474 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.39019 -40.69131 -39.65689 -37.47994 -37.03150 -35.07124 -34.64438 -33.23154 -31.87948 -30.71741 -29.11827 -27.59788 -27.33808 -27.17388 -24.09524 -23.14575 -22.30794 -22.16432 -21.45200 -19.74713 -18.89638 -18.48493 -17.79322 -17.65717 -17.07884 -17.05230 -16.76072 -16.36038 -15.93801 -15.68996 -15.32716 -14.86379 -14.71604 -14.51590 -14.31655 -14.18009 -13.93905 -13.79297 -13.72029 -13.48416 -13.30129 -12.99750 -12.89572 -12.77727 -12.73303 -12.57992 -12.51406 -12.18013 -12.10585 -12.03446 -11.81043 -11.53476 -11.44689 -11.30478 -11.17001 -10.59724 -10.39870 -9.77262 -9.24618 -8.88861 -8.12706 -6.29430 0.17539 0.42136 1.38754 1.42233 1.44736 1.52077 1.93963 2.00637 2.36916 2.57801 2.81569 3.11248 3.14793 3.44115 3.86435 3.89067 3.95824 4.17534 4.26186 4.39274 4.43453 4.47288 4.51029 4.56013 4.70663 4.75175 4.79563 4.83547 4.84921 4.89314 4.94120 5.06791 5.07073 5.10158 5.13331 5.15887 5.33179 5.39080 5.50526 5.53025 5.63007 5.66062 5.71254 5.75435 5.79135 6.07824 6.08659 6.19616 6.79455 6.89454 6.94778 7.36429 7.58877 8.91228 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.023014 B = 0.001890 C = 0.001886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.379049 B =14809.832292 C =14843.562120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.259 3.741 3 H 0.004 0.996 4 C -0.537 4.537 5 H 0.063 0.937 6 C 0.011 3.989 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.286 1.286 10 H -0.261 1.261 11 H -0.277 1.277 12 N -0.606 5.606 13 C 0.080 3.920 14 C 0.486 3.514 15 O -0.612 6.612 16 C -0.124 4.124 17 C -0.092 4.092 18 C -0.066 4.066 19 C -0.101 4.101 20 C -0.090 4.090 21 C -0.135 4.135 22 C 0.113 3.887 23 C -0.147 4.147 24 C -0.070 4.070 25 C -0.110 4.110 26 C 0.523 3.477 27 O -0.552 6.552 28 N -0.653 5.653 29 H 0.046 0.954 30 H 0.064 0.936 31 H 0.018 0.982 32 H 0.263 0.737 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.063 0.937 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.143 0.857 46 H 0.135 0.865 47 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.211 -7.456 -22.002 24.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.157 3.843 3 H 0.022 0.978 4 C -0.575 4.575 5 H 0.081 0.919 6 C -0.189 4.189 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.211 1.211 10 H -0.185 1.185 11 H -0.202 1.202 12 N -0.336 5.336 13 C -0.063 4.063 14 C 0.276 3.724 15 O -0.495 6.495 16 C -0.163 4.163 17 C -0.130 4.130 18 C -0.103 4.103 19 C -0.102 4.102 20 C -0.109 4.109 21 C -0.156 4.156 22 C 0.017 3.983 23 C -0.150 4.150 24 C -0.088 4.088 25 C -0.148 4.148 26 C 0.313 3.687 27 O -0.430 6.430 28 N -0.295 5.295 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.082 0.918 36 H 0.134 0.866 37 H 0.137 0.863 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.111 0.889 41 H 0.113 0.887 42 H 0.163 0.837 43 H 0.161 0.839 44 H 0.163 0.837 45 H 0.160 0.840 46 H 0.152 0.848 47 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 9.260 -6.292 -22.269 24.925 hybrid contribution 0.738 0.487 1.303 1.575 sum 9.998 -5.805 -20.965 23.942 Atomic orbital electron populations 1.21855 0.97346 1.00011 0.99732 1.18477 0.91513 0.92144 0.82196 0.97799 1.21573 1.31765 1.13035 0.91146 0.91914 1.25791 0.95178 0.95708 1.02183 1.70031 1.37413 1.23962 1.24393 0.85498 0.78400 0.79010 0.78035 1.21144 1.18540 1.20223 1.48304 1.49335 1.13532 1.22443 1.21859 1.01487 0.80442 1.02466 1.21762 0.77970 0.86850 0.85831 1.90618 1.60270 1.20172 1.78488 1.21737 1.02271 0.99739 0.92568 1.21232 0.98647 0.97571 0.95549 1.20552 0.99526 0.96365 0.93905 1.20011 0.94360 0.98886 0.96954 1.21095 0.93369 0.97825 0.98578 1.20598 1.01309 0.97645 0.96031 1.18313 0.93192 0.93019 0.93804 1.19935 0.93222 1.01179 1.00669 1.20406 1.00479 0.93885 0.94076 1.21085 0.95671 0.98953 0.99138 1.21002 0.88543 0.80006 0.79191 1.90794 1.84766 1.33381 1.34058 1.43695 1.12314 1.38999 1.34528 0.93448 0.91688 0.96275 0.92740 0.91715 0.88487 0.91801 0.86575 0.86253 0.93225 0.93514 0.88890 0.88730 0.83651 0.83925 0.83704 0.83954 0.84754 0.74199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.33 8.97 71.98 0.65 -5.68 16 2 C 0.26 13.49 2.64 44.24 0.12 13.61 16 3 H 0.00 0.25 6.90 -2.39 -0.02 0.24 16 4 C -0.54 -29.00 7.99 25.60 0.20 -28.79 16 5 H 0.06 3.25 7.33 -2.91 -0.02 3.23 16 6 C 0.01 0.59 5.30 84.66 0.45 1.04 16 7 N -0.92 -53.34 11.32 21.45 0.24 -53.10 16 8 Si 0.97 42.77 29.54 68.60 2.03 44.79 16 9 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 10 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 N -0.61 -24.70 2.75 -826.80 -2.28 -26.97 16 13 C 0.08 2.29 9.24 127.77 1.18 3.47 16 14 C 0.49 18.96 7.67 87.66 0.67 19.64 16 15 O -0.61 -30.72 15.31 -3.03 -0.05 -30.77 16 16 C -0.12 -2.83 4.25 29.85 0.13 -2.70 16 17 C -0.09 -2.03 4.49 30.59 0.14 -1.89 16 18 C -0.07 -0.87 5.35 29.85 0.16 -0.71 16 19 C -0.10 -1.53 5.14 -19.81 -0.10 -1.63 16 20 C -0.09 -1.31 9.68 22.22 0.21 -1.09 16 21 C -0.14 -1.92 10.07 22.47 0.23 -1.70 16 22 C 0.11 1.81 7.11 38.35 0.27 2.08 16 23 C -0.15 -2.29 6.35 -19.70 -0.13 -2.41 16 24 C -0.07 -1.03 9.70 22.18 0.22 -0.82 16 25 C -0.11 -1.48 6.88 29.46 0.20 -1.28 16 26 C 0.52 10.03 8.71 87.94 0.77 10.80 16 27 O -0.55 -14.73 18.03 -3.04 -0.05 -14.79 16 28 N -0.65 -10.20 5.88 -303.21 -1.78 -11.98 16 29 H 0.05 2.06 7.67 -2.39 -0.02 2.04 16 30 H 0.06 3.51 6.07 -2.39 -0.01 3.50 16 31 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 33 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.10 1.94 6.44 -2.38 -0.02 1.92 16 35 H 0.06 2.05 7.02 -2.39 -0.02 2.03 16 36 H 0.12 2.04 7.40 -2.39 -0.02 2.02 16 37 H 0.12 1.99 8.11 -2.39 -0.02 1.97 16 38 H 0.05 1.29 8.10 -2.39 -0.02 1.27 16 39 H 0.05 1.25 8.10 -2.39 -0.02 1.23 16 40 H 0.09 0.92 8.09 -2.39 -0.02 0.90 16 41 H 0.09 0.90 8.09 -2.39 -0.02 0.88 16 42 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 43 H 0.14 1.42 8.06 -2.91 -0.02 1.40 16 44 H 0.15 1.61 8.06 -2.92 -0.02 1.59 16 45 H 0.14 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.13 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.42 4.97 8.96 -92.71 -0.83 4.14 16 Total: -1.00 -78.96 387.01 3.63 -75.34 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: 0.15 Total: 15.57 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 5.36 Total: 1.91 kcal Atomic # 7 Polarization: -88.24 SS G_CDS: -3.82 Total: -92.06 kcal Atomic # 8 Polarization: -45.46 SS G_CDS: -0.10 Total: -45.56 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -78.96 3.63 -75.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354876421.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.287 kcal (2) G-P(sol) polarization free energy of solvation -78.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds