Wall clock time and date at job start Tue Mar 31 2020 16:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46878 * 2 1 4 4 C 1.45649 * 117.70538 * 269.97869 * 3 2 1 5 5 C 1.53465 * 110.73974 * 158.00538 * 4 3 2 6 6 N 1.47269 * 107.93563 * 46.91475 * 5 4 3 7 7 C 1.34769 * 121.35673 * 118.51275 * 6 5 4 8 8 O 1.21277 * 119.99883 * 359.71963 * 7 6 5 9 9 C 1.50705 * 120.00178 * 179.71442 * 7 6 5 10 10 C 1.53000 * 109.47112 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46926 * 305.00317 * 10 9 7 12 12 C 1.50697 * 109.47063 * 65.00193 * 10 9 7 13 13 H 1.08009 * 120.00147 * 234.68680 * 12 10 9 14 14 C 1.37874 * 120.00036 * 54.68444 * 12 10 9 15 15 N 1.31518 * 120.00069 * 4.34387 * 14 12 10 16 16 Si 1.86801 * 120.00245 * 184.33982 * 14 12 10 17 17 H 1.48507 * 109.46882 * 90.00074 * 16 14 12 18 18 H 1.48495 * 109.47509 * 210.00105 * 16 14 12 19 19 H 1.48501 * 109.47149 * 330.00327 * 16 14 12 20 20 C 1.50698 * 109.47184 * 185.00227 * 10 9 7 21 21 C 1.38231 * 119.99939 * 331.77394 * 20 10 9 22 22 C 1.38238 * 119.99947 * 179.97438 * 21 20 10 23 23 C 1.38232 * 120.00231 * 359.97438 * 22 21 20 24 24 C 1.38239 * 119.99711 * 359.97438 * 23 22 21 25 25 C 1.38233 * 119.99999 * 151.75249 * 20 10 9 26 26 C 1.47054 * 117.29203 * 298.24019 * 6 5 4 27 27 C 1.33380 * 117.70652 * 90.00302 * 3 2 1 28 28 O 1.21280 * 118.48864 * 4.27143 * 27 3 2 29 29 H 1.08998 * 109.47438 * 59.99649 * 1 2 3 30 30 H 1.08997 * 109.46876 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46590 * 299.99748 * 1 2 3 32 32 H 1.09001 * 109.47066 * 240.00039 * 2 1 3 33 33 H 1.09000 * 109.47115 * 119.99929 * 2 1 3 34 34 H 1.08997 * 109.22065 * 278.45485 * 4 3 2 35 35 H 1.09002 * 109.21450 * 37.83678 * 4 3 2 36 36 H 1.09005 * 109.84756 * 287.31748 * 5 4 3 37 37 H 1.08996 * 109.84271 * 166.50560 * 5 4 3 38 38 H 1.08998 * 109.46677 * 60.00643 * 9 7 6 39 39 H 1.08994 * 109.47281 * 300.00058 * 9 7 6 40 40 H 0.97001 * 119.99899 * 179.97438 * 15 14 12 41 41 H 1.08002 * 120.00159 * 359.97438 * 21 20 10 42 42 H 1.08001 * 119.99430 * 180.02562 * 22 21 20 43 43 H 1.08000 * 120.00071 * 179.72397 * 23 22 21 44 44 H 1.07998 * 120.00075 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.00386 * 359.97438 * 25 20 10 46 46 H 1.08993 * 109.57104 * 162.80665 * 26 6 5 47 47 H 1.09002 * 109.56995 * 283.16490 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2444 2.0195 -1.2895 5 6 2.2145 3.5477 -1.1521 6 7 3.0473 3.9154 0.0055 7 6 4.1403 4.6912 -0.1351 8 8 4.4585 5.0974 -1.2326 9 6 4.9670 5.0541 1.0716 10 6 6.1404 5.9357 0.6394 11 1 6.7086 5.4279 -0.1401 12 6 5.6161 7.2444 0.1072 13 1 5.9007 7.5791 -0.8795 14 6 4.7730 8.0146 0.8799 15 7 4.4944 7.6503 2.1125 16 14 4.0266 9.5757 0.1760 17 1 2.7313 9.2548 -0.4757 18 1 3.8011 10.5537 1.2704 19 1 4.9538 10.1595 -0.8263 20 6 7.0350 6.1972 1.8236 21 6 6.5073 6.1998 3.1012 22 6 7.3281 6.4392 4.1875 23 6 8.6766 6.6755 3.9963 24 6 9.2045 6.6718 2.7186 25 6 8.3834 6.4341 1.6322 26 6 2.6342 3.4067 1.3220 27 6 2.2250 1.9659 1.1809 28 8 2.0759 1.3057 2.1872 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2153 1.7111 -1.6772 35 1 1.4651 1.7085 -1.9853 36 1 1.1905 3.8848 -0.9905 37 1 2.6157 4.0082 -2.0549 38 1 5.3474 4.1453 1.5379 39 1 4.3485 5.5975 1.7857 40 1 3.9016 8.1925 2.6562 41 1 5.4538 6.0149 3.2508 42 1 6.9158 6.4409 5.1857 43 1 9.3169 6.8669 4.8446 44 1 10.2579 6.8568 2.5691 45 1 8.7959 6.4313 0.6341 46 1 3.4674 3.4828 2.0206 47 1 1.7914 3.9911 1.6912 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356757152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:58 Heat of formation + Delta-G solvation = -29.905472 kcal Electronic energy + Delta-G solvation = -29131.166334 eV Core-core repulsion = 25279.297764 eV Total energy + Delta-G solvation = -3851.868570 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.67319 -38.96707 -38.05261 -36.35282 -35.05324 -34.24485 -31.49963 -31.02390 -29.95220 -29.77999 -28.43334 -27.02534 -25.87026 -23.97545 -23.06028 -22.32644 -21.39141 -20.11674 -19.35385 -18.15130 -17.16144 -16.95832 -16.22510 -16.08370 -15.74313 -15.26357 -15.20219 -14.93942 -14.64158 -13.91994 -13.88575 -13.79479 -13.57991 -13.32438 -13.20550 -12.74971 -12.39753 -12.35633 -12.25849 -12.20302 -11.90387 -11.70837 -11.55059 -11.46827 -11.33042 -11.15539 -10.91975 -10.83217 -10.47005 -10.18811 -10.12616 -9.95695 -9.33525 -9.23728 -8.88966 -8.86322 -8.46728 -8.32003 -7.80769 -7.45103 -6.00735 -4.10892 2.49345 2.55703 2.57795 2.79694 3.28702 3.32420 3.35289 3.40388 3.49675 4.40588 4.40782 4.68122 4.85685 4.95686 4.96804 5.09243 5.19126 5.19804 5.22614 5.33058 5.44045 5.51536 5.56472 5.76741 5.81398 5.81643 5.87289 5.92625 5.96588 6.01713 6.25611 6.30288 6.41509 6.53712 6.64376 6.73317 6.76580 7.09018 7.13926 7.24962 7.33007 7.42441 7.52833 7.65753 7.81681 7.90725 8.06938 8.10624 8.16651 8.31258 8.85264 8.98139 9.52740 10.93479 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012828 B = 0.003942 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.250771 B = 7101.112230 C = 8223.491536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.100 3.900 3 N -0.602 5.602 4 C 0.101 3.899 5 C 0.098 3.902 6 N -0.634 5.634 7 C 0.534 3.466 8 O -0.517 6.517 9 C -0.140 4.140 10 C 0.088 3.912 11 H 0.037 0.963 12 C -0.471 4.471 13 H 0.059 0.941 14 C 0.061 3.939 15 N -0.889 5.889 16 Si 0.892 3.108 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.275 1.275 20 C -0.028 4.028 21 C -0.069 4.069 22 C -0.142 4.142 23 C -0.153 4.153 24 C -0.141 4.141 25 C -0.131 4.131 26 C 0.104 3.896 27 C 0.512 3.488 28 O -0.549 6.549 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.111 0.889 38 H 0.054 0.946 39 H 0.136 0.864 40 H 0.261 0.739 41 H 0.139 0.861 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.101 0.899 45 H 0.105 0.895 46 H 0.124 0.876 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.461 -11.728 -2.349 13.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.023 4.023 3 N -0.335 5.335 4 C -0.023 4.023 5 C -0.026 4.026 6 N -0.374 5.374 7 C 0.325 3.675 8 O -0.390 6.390 9 C -0.179 4.179 10 C 0.069 3.931 11 H 0.056 0.944 12 C -0.509 4.509 13 H 0.078 0.922 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.721 3.279 17 H -0.209 1.209 18 H -0.214 1.214 19 H -0.200 1.200 20 C -0.029 4.029 21 C -0.088 4.088 22 C -0.161 4.161 23 C -0.172 4.172 24 C -0.160 4.160 25 C -0.149 4.149 26 C -0.022 4.022 27 C 0.300 3.700 28 O -0.427 6.427 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.129 0.871 38 H 0.072 0.928 39 H 0.153 0.847 40 H 0.072 0.928 41 H 0.157 0.843 42 H 0.120 0.880 43 H 0.117 0.883 44 H 0.119 0.881 45 H 0.123 0.877 46 H 0.142 0.858 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.416 -11.705 -2.303 13.101 hybrid contribution -0.603 1.152 -0.305 1.335 sum -6.018 -10.553 -2.607 12.425 Atomic orbital electron populations 1.22092 0.95796 1.02144 1.02291 1.21504 0.94484 0.82918 1.03399 1.47312 1.65479 1.14551 1.06167 1.21906 1.02016 0.93885 0.84456 1.21876 0.95779 0.92446 0.92481 1.48434 1.28595 1.53734 1.06605 1.21231 0.78993 0.75081 0.92180 1.90614 1.69141 1.51219 1.28069 1.22020 1.00563 0.99119 0.96247 1.17635 0.89980 0.94830 0.90628 0.94428 1.20983 1.25793 1.03419 1.00683 0.92231 1.24883 0.96619 0.97801 0.94621 1.69656 1.36924 1.39054 1.07265 0.86572 0.79589 0.83139 0.78650 1.20923 1.21397 1.19997 1.20317 0.92655 0.94193 0.95710 1.21354 0.99850 0.96325 0.91228 1.21055 0.93784 1.02743 0.98478 1.20773 0.95567 1.04619 0.96213 1.20802 0.98499 1.03476 0.93198 1.20887 0.94136 1.02299 0.97618 1.21770 1.03492 0.89508 0.87438 1.20524 0.76588 0.90051 0.82871 1.90719 1.52666 1.63619 1.35672 0.92638 0.91637 0.92228 0.90688 0.89405 0.91217 0.89938 0.91142 0.87111 0.92772 0.84701 0.92849 0.84308 0.88028 0.88276 0.88086 0.87660 0.85847 0.88248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.40 10.23 37.16 0.38 -1.02 16 2 C 0.10 0.97 5.92 -4.04 -0.02 0.95 16 3 N -0.60 -7.08 2.80 -174.59 -0.49 -7.56 16 4 C 0.10 1.03 6.51 -4.26 -0.03 1.00 16 5 C 0.10 1.23 6.56 -3.38 -0.02 1.21 16 6 N -0.63 -10.05 2.97 -173.85 -0.52 -10.57 16 7 C 0.53 10.71 7.47 -10.99 -0.08 10.63 16 8 O -0.52 -11.96 14.47 5.56 0.08 -11.88 16 9 C -0.14 -2.89 2.52 -27.88 -0.07 -2.96 16 10 C 0.09 2.07 1.97 -92.93 -0.18 1.88 16 11 H 0.04 0.89 7.91 -51.93 -0.41 0.48 16 12 C -0.47 -12.28 7.27 -34.44 -0.25 -12.53 16 13 H 0.06 1.64 7.82 -52.48 -0.41 1.23 16 14 C 0.06 1.55 5.13 -17.82 -0.09 1.46 16 15 N -0.89 -22.08 7.99 55.43 0.44 -21.64 16 16 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.03 -0.63 4.69 -104.63 -0.49 -1.12 16 21 C -0.07 -1.50 7.47 -39.58 -0.30 -1.79 16 22 C -0.14 -2.81 10.05 -39.58 -0.40 -3.21 16 23 C -0.15 -2.88 10.05 -39.58 -0.40 -3.27 16 24 C -0.14 -2.71 10.05 -39.58 -0.40 -3.10 16 25 C -0.13 -2.77 9.71 -39.58 -0.38 -3.16 16 26 C 0.10 1.49 6.40 -5.02 -0.03 1.46 16 27 C 0.51 7.33 7.57 -11.73 -0.09 7.24 16 28 O -0.55 -9.31 16.18 5.56 0.09 -9.22 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.57 8.01 -51.93 -0.42 0.15 16 33 H 0.09 1.00 7.10 -51.93 -0.37 0.63 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.60 8.07 -51.93 -0.42 0.19 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.11 1.50 7.06 -51.93 -0.37 1.14 16 38 H 0.05 1.01 7.57 -51.93 -0.39 0.62 16 39 H 0.14 2.95 4.67 -51.93 -0.24 2.71 16 40 H 0.26 6.38 8.31 -40.82 -0.34 6.04 16 41 H 0.14 3.06 5.18 -52.49 -0.27 2.79 16 42 H 0.10 1.78 8.06 -52.49 -0.42 1.35 16 43 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 45 H 0.11 2.11 8.06 -52.49 -0.42 1.68 16 46 H 0.12 1.80 6.27 -51.93 -0.33 1.48 16 47 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 LS Contribution 373.87 15.07 5.63 5.63 Total: -1.00 -30.15 373.87 -9.62 -39.78 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -6.99 Total: 5.81 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -2.86 Total: -6.35 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: -0.56 Total: -39.77 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.17 Total: -21.10 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.15 -9.62 -39.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356757152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.871 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds