Wall clock time and date at job start Tue Mar 31 2020 16:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.46878 * 2 1 4 4 C 1.45649 * 117.70538 * 269.97869 * 3 2 1 5 5 C 1.53465 * 110.73974 * 158.00538 * 4 3 2 6 6 N 1.47269 * 107.93563 * 46.91475 * 5 4 3 7 7 C 1.34769 * 121.35673 * 118.51275 * 6 5 4 8 8 O 1.21277 * 119.99883 * 359.71963 * 7 6 5 9 9 C 1.50705 * 120.00178 * 179.71442 * 7 6 5 10 10 C 1.53000 * 109.47112 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46926 * 305.00317 * 10 9 7 12 12 C 1.50697 * 109.47063 * 65.00193 * 10 9 7 13 13 H 1.08009 * 120.00147 * 234.68680 * 12 10 9 14 14 C 1.37874 * 120.00036 * 54.68444 * 12 10 9 15 15 N 1.31518 * 120.00069 * 4.34387 * 14 12 10 16 16 Si 1.86801 * 120.00245 * 184.33982 * 14 12 10 17 17 H 1.48507 * 109.46882 * 90.00074 * 16 14 12 18 18 H 1.48495 * 109.47509 * 210.00105 * 16 14 12 19 19 H 1.48501 * 109.47149 * 330.00327 * 16 14 12 20 20 C 1.50698 * 109.47184 * 185.00227 * 10 9 7 21 21 C 1.38231 * 119.99939 * 331.77394 * 20 10 9 22 22 C 1.38238 * 119.99947 * 179.97438 * 21 20 10 23 23 C 1.38232 * 120.00231 * 359.97438 * 22 21 20 24 24 C 1.38239 * 119.99711 * 359.97438 * 23 22 21 25 25 C 1.38233 * 119.99999 * 151.75249 * 20 10 9 26 26 C 1.47054 * 117.29203 * 298.24019 * 6 5 4 27 27 C 1.33380 * 117.70652 * 90.00302 * 3 2 1 28 28 O 1.21280 * 118.48864 * 4.27143 * 27 3 2 29 29 H 1.08998 * 109.47438 * 59.99649 * 1 2 3 30 30 H 1.08997 * 109.46876 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46590 * 299.99748 * 1 2 3 32 32 H 1.09001 * 109.47066 * 240.00039 * 2 1 3 33 33 H 1.09000 * 109.47115 * 119.99929 * 2 1 3 34 34 H 1.08997 * 109.22065 * 278.45485 * 4 3 2 35 35 H 1.09002 * 109.21450 * 37.83678 * 4 3 2 36 36 H 1.09005 * 109.84756 * 287.31748 * 5 4 3 37 37 H 1.08996 * 109.84271 * 166.50560 * 5 4 3 38 38 H 1.08998 * 109.46677 * 60.00643 * 9 7 6 39 39 H 1.08994 * 109.47281 * 300.00058 * 9 7 6 40 40 H 0.97001 * 119.99899 * 179.97438 * 15 14 12 41 41 H 1.08002 * 120.00159 * 359.97438 * 21 20 10 42 42 H 1.08001 * 119.99430 * 180.02562 * 22 21 20 43 43 H 1.08000 * 120.00071 * 179.72397 * 23 22 21 44 44 H 1.07998 * 120.00075 * 179.97438 * 24 23 22 45 45 H 1.08000 * 120.00386 * 359.97438 * 25 20 10 46 46 H 1.08993 * 109.57104 * 162.80665 * 26 6 5 47 47 H 1.09002 * 109.56995 * 283.16490 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2444 2.0195 -1.2895 5 6 2.2145 3.5477 -1.1521 6 7 3.0473 3.9154 0.0055 7 6 4.1403 4.6912 -0.1351 8 8 4.4585 5.0974 -1.2326 9 6 4.9670 5.0541 1.0716 10 6 6.1404 5.9357 0.6394 11 1 6.7086 5.4279 -0.1401 12 6 5.6161 7.2444 0.1072 13 1 5.9007 7.5791 -0.8795 14 6 4.7730 8.0146 0.8799 15 7 4.4944 7.6503 2.1125 16 14 4.0266 9.5757 0.1760 17 1 2.7313 9.2548 -0.4757 18 1 3.8011 10.5537 1.2704 19 1 4.9538 10.1595 -0.8263 20 6 7.0350 6.1972 1.8236 21 6 6.5073 6.1998 3.1012 22 6 7.3281 6.4392 4.1875 23 6 8.6766 6.6755 3.9963 24 6 9.2045 6.6718 2.7186 25 6 8.3834 6.4341 1.6322 26 6 2.6342 3.4067 1.3220 27 6 2.2250 1.9659 1.1809 28 8 2.0759 1.3057 2.1872 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.2153 1.7111 -1.6772 35 1 1.4651 1.7085 -1.9853 36 1 1.1905 3.8848 -0.9905 37 1 2.6157 4.0082 -2.0549 38 1 5.3474 4.1453 1.5379 39 1 4.3485 5.5975 1.7857 40 1 3.9016 8.1925 2.6562 41 1 5.4538 6.0149 3.2508 42 1 6.9158 6.4409 5.1857 43 1 9.3169 6.8669 4.8446 44 1 10.2579 6.8568 2.5691 45 1 8.7959 6.4313 0.6341 46 1 3.4674 3.4828 2.0206 47 1 1.7914 3.9911 1.6912 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356757152.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:57 Heat of formation + Delta-G solvation = -45.717962 kcal Electronic energy + Delta-G solvation = -29131.852015 eV Core-core repulsion = 25279.297764 eV Total energy + Delta-G solvation = -3852.554251 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.82907 -40.46506 -39.59387 -37.52455 -36.29055 -35.97922 -33.03077 -32.29324 -31.40480 -30.96690 -29.97616 -28.36180 -27.45833 -25.20464 -24.24397 -23.63354 -22.93224 -21.60641 -20.80552 -19.33790 -18.49092 -18.30393 -17.83693 -17.34294 -17.15937 -16.85600 -16.44113 -16.27518 -16.03150 -15.48116 -15.34656 -14.98266 -14.73162 -14.70288 -14.54414 -14.05207 -13.80575 -13.71939 -13.36638 -13.30166 -13.17630 -13.17330 -13.02671 -12.86956 -12.78464 -12.67751 -12.44888 -12.24207 -11.91723 -11.85927 -11.68269 -11.35725 -11.07620 -11.04316 -10.59960 -10.28852 -9.86174 -9.61095 -9.39662 -9.11254 -7.93250 -6.09436 0.89235 1.00324 1.38026 1.41434 1.43091 1.49020 1.74224 1.94505 2.11292 2.46470 3.21150 3.36991 3.38083 3.68558 3.90680 4.07328 4.14708 4.21530 4.32868 4.34957 4.41622 4.42659 4.48194 4.51264 4.54471 4.66908 4.69934 4.79325 4.82781 4.88612 4.90589 5.02654 5.08280 5.13667 5.25945 5.29796 5.38805 5.54079 5.56671 5.63517 5.67825 5.89877 5.94985 6.09272 6.30147 6.31975 6.39689 6.43727 6.58567 6.85200 6.98750 7.42806 7.53559 8.96180 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012828 B = 0.003942 C = 0.003404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.250771 B = 7101.112230 C = 8223.491536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.096 3.904 3 N -0.597 5.597 4 C 0.107 3.893 5 C 0.092 3.908 6 N -0.628 5.628 7 C 0.531 3.469 8 O -0.557 6.557 9 C -0.130 4.130 10 C 0.089 3.911 11 H 0.016 0.984 12 C -0.490 4.490 13 H 0.030 0.970 14 C 0.036 3.964 15 N -0.885 5.885 16 Si 0.930 3.070 17 H -0.283 1.283 18 H -0.281 1.281 19 H -0.284 1.284 20 C -0.052 4.052 21 C -0.082 4.082 22 C -0.148 4.148 23 C -0.149 4.149 24 C -0.140 4.140 25 C -0.151 4.151 26 C 0.104 3.896 27 C 0.512 3.488 28 O -0.581 6.581 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.124 0.876 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.126 0.874 40 H 0.262 0.738 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.135 0.865 44 H 0.132 0.868 45 H 0.104 0.896 46 H 0.117 0.883 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.974 -12.567 -1.823 14.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.026 4.026 3 N -0.329 5.329 4 C -0.016 4.016 5 C -0.031 4.031 6 N -0.366 5.366 7 C 0.322 3.678 8 O -0.434 6.434 9 C -0.169 4.169 10 C 0.070 3.930 11 H 0.035 0.965 12 C -0.528 4.528 13 H 0.049 0.951 14 C -0.164 4.164 15 N -0.524 5.524 16 Si 0.758 3.242 17 H -0.210 1.210 18 H -0.207 1.207 19 H -0.210 1.210 20 C -0.053 4.053 21 C -0.101 4.101 22 C -0.166 4.166 23 C -0.167 4.167 24 C -0.158 4.158 25 C -0.169 4.169 26 C -0.022 4.022 27 C 0.299 3.701 28 O -0.461 6.461 29 H 0.088 0.912 30 H 0.102 0.898 31 H 0.054 0.946 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.142 0.858 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.086 0.914 39 H 0.143 0.857 40 H 0.072 0.928 41 H 0.147 0.853 42 H 0.143 0.857 43 H 0.153 0.847 44 H 0.150 0.850 45 H 0.122 0.878 46 H 0.135 0.865 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -5.963 -12.582 -1.782 14.037 hybrid contribution -0.413 1.362 -0.469 1.499 sum -6.377 -11.220 -2.251 13.100 Atomic orbital electron populations 1.22039 0.94542 1.03246 1.01799 1.21699 0.95454 0.81525 1.03915 1.47412 1.64227 1.15394 1.05859 1.21978 1.03636 0.91727 0.84237 1.22136 0.95845 0.94405 0.90675 1.48315 1.27610 1.52312 1.08344 1.21070 0.79960 0.75469 0.91271 1.90592 1.70501 1.53163 1.29095 1.21814 0.99673 0.99058 0.96402 1.17531 0.90840 0.93920 0.90695 0.96511 1.20940 1.27098 1.04989 0.99776 0.95133 1.25221 0.96815 0.99251 0.95084 1.69750 1.36561 1.39099 1.07034 0.85993 0.78705 0.81396 0.78075 1.20964 1.20680 1.20984 1.20322 0.93317 0.95878 0.95735 1.21318 0.99810 0.97353 0.91576 1.21367 0.94335 1.01936 0.98942 1.21196 0.95535 1.02776 0.97184 1.21161 0.99825 1.02063 0.92741 1.21080 0.94141 1.03079 0.98614 1.21831 1.03711 0.90189 0.86489 1.20381 0.76617 0.89677 0.83382 1.90708 1.54418 1.64093 1.36893 0.91173 0.89819 0.94554 0.87731 0.91340 0.91242 0.85793 0.89246 0.88157 0.91409 0.85673 0.92827 0.85261 0.85701 0.84693 0.84998 0.87759 0.86504 0.87008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 10.23 71.98 0.74 -1.54 16 2 C 0.10 1.64 5.92 86.38 0.51 2.16 16 3 N -0.60 -12.91 2.80 -825.44 -2.32 -15.22 16 4 C 0.11 1.90 6.51 86.70 0.56 2.46 16 5 C 0.09 2.19 6.56 86.39 0.57 2.76 16 6 N -0.63 -19.85 2.97 -822.34 -2.44 -22.30 16 7 C 0.53 21.92 7.47 87.66 0.65 22.58 16 8 O -0.56 -26.79 14.47 -3.02 -0.04 -26.84 16 9 C -0.13 -5.54 2.52 29.85 0.08 -5.46 16 10 C 0.09 4.36 1.97 -12.29 -0.02 4.33 16 11 H 0.02 0.84 7.91 -2.38 -0.02 0.83 16 12 C -0.49 -26.61 7.27 25.60 0.19 -26.43 16 13 H 0.03 1.78 7.82 -2.91 -0.02 1.76 16 14 C 0.04 1.87 5.13 84.65 0.43 2.30 16 15 N -0.89 -44.32 7.99 21.45 0.17 -44.15 16 16 Si 0.93 43.54 29.54 68.60 2.03 45.57 16 17 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 20 C -0.05 -2.39 4.69 -19.87 -0.09 -2.48 16 21 C -0.08 -3.55 7.47 22.27 0.17 -3.38 16 22 C -0.15 -5.56 10.05 22.27 0.22 -5.34 16 23 C -0.15 -5.14 10.05 22.27 0.22 -4.92 16 24 C -0.14 -5.07 10.05 22.27 0.22 -4.84 16 25 C -0.15 -6.41 9.71 22.27 0.22 -6.19 16 26 C 0.10 2.94 6.40 85.45 0.55 3.49 16 27 C 0.51 14.30 7.57 87.79 0.66 14.97 16 28 O -0.58 -19.66 16.18 -3.03 -0.05 -19.71 16 29 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 1.20 8.01 -2.39 -0.02 1.18 16 33 H 0.07 1.48 7.10 -2.39 -0.02 1.46 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.12 1.27 8.07 -2.39 -0.02 1.25 16 36 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.10 2.68 7.06 -2.39 -0.02 2.66 16 38 H 0.07 2.63 7.57 -2.39 -0.02 2.61 16 39 H 0.13 5.63 4.67 -2.39 -0.01 5.62 16 40 H 0.26 12.72 8.31 -92.71 -0.77 11.95 16 41 H 0.13 5.76 5.18 -2.91 -0.02 5.74 16 42 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 43 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 44 H 0.13 3.90 8.06 -2.91 -0.02 3.87 16 45 H 0.10 4.30 8.06 -2.91 -0.02 4.28 16 46 H 0.12 3.47 6.27 -2.39 -0.01 3.46 16 47 H 0.11 2.91 8.14 -2.39 -0.02 2.89 16 Total: -1.00 -67.17 373.87 4.19 -62.98 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.97 Total: 25.20 kcal Atomic # 6 Polarization: -11.41 SS G_CDS: 5.88 Total: -5.54 kcal Atomic # 7 Polarization: -77.08 SS G_CDS: -4.59 Total: -81.66 kcal Atomic # 8 Polarization: -46.45 SS G_CDS: -0.09 Total: -46.55 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -67.17 4.19 -62.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356757152.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.261 kcal (2) G-P(sol) polarization free energy of solvation -67.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds