Wall clock time and date at job start Tue Mar 31 2020 15:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 119.99955 * 2 1 4 4 N 1.46501 * 109.47113 * 125.00470 * 3 2 1 5 5 C 1.46505 * 119.99572 * 270.00092 * 4 3 2 6 6 C 1.50700 * 109.46797 * 269.99890 * 5 4 3 7 7 H 1.07996 * 120.00698 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99730 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00064 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99896 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47119 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46751 * 119.99892 * 10 8 6 13 13 H 1.48499 * 109.47092 * 239.99798 * 10 8 6 14 14 C 1.34771 * 120.00297 * 89.99764 * 4 3 2 15 15 O 1.21279 * 119.99941 * 180.02562 * 14 4 3 16 16 C 1.50706 * 119.99858 * 0.02562 * 14 4 3 17 17 C 1.52999 * 109.46603 * 179.97438 * 16 14 4 18 18 H 1.08999 * 109.47014 * 55.00679 * 17 16 14 19 19 C 1.53008 * 109.46675 * 175.00260 * 17 16 14 20 20 N 1.46499 * 109.47493 * 295.00080 * 17 16 14 21 21 C 1.34777 * 119.99665 * 155.28120 * 20 17 16 22 22 O 1.21553 * 120.00289 * 359.72074 * 21 20 17 23 23 C 1.47846 * 119.99557 * 179.72375 * 21 20 17 24 24 C 1.39575 * 120.14570 * 359.72055 * 23 21 20 25 25 C 1.37955 * 119.85022 * 179.78726 * 24 23 21 26 26 C 1.38362 * 120.14738 * 0.49095 * 25 24 23 27 27 C 1.38361 * 120.29120 * 359.74322 * 26 25 24 28 28 C 1.37957 * 120.14182 * 0.02562 * 27 26 25 29 29 H 1.08002 * 120.00204 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.00217 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.00217 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.46999 * 5.00435 * 3 2 1 33 33 H 1.08997 * 109.47038 * 245.00517 * 3 2 1 34 34 H 1.08999 * 109.47584 * 29.99736 * 5 4 3 35 35 H 1.09002 * 109.47000 * 149.99988 * 5 4 3 36 36 H 0.97007 * 119.99654 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.46851 * 59.99874 * 16 14 4 38 38 H 1.08993 * 109.47183 * 299.99659 * 16 14 4 39 39 H 1.09005 * 109.46722 * 300.00264 * 19 17 16 40 40 H 1.09000 * 109.47169 * 59.99905 * 19 17 16 41 41 H 1.08995 * 109.47066 * 180.02562 * 19 17 16 42 42 H 0.97001 * 119.99790 * 334.99833 * 20 17 16 43 43 H 1.08001 * 120.07522 * 0.02562 * 24 23 21 44 44 H 1.08007 * 119.92736 * 180.22839 * 25 24 23 45 45 H 1.08004 * 119.85306 * 179.71843 * 26 25 24 46 46 H 1.07995 * 119.92745 * 180.02562 * 27 26 25 47 47 H 1.08008 * 120.06811 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8648 2.4248 6 6 2.8443 3.3435 2.4804 7 1 3.3032 3.8371 1.6365 8 6 2.5193 4.0664 3.6086 9 7 1.9609 3.4654 4.6365 10 14 2.8737 5.8992 3.6778 11 1 3.5014 6.3305 2.4029 12 1 1.6035 6.6417 3.8796 13 1 3.7973 6.1826 4.8056 14 6 4.2497 0.8661 0.9823 15 8 5.0197 0.8879 1.9191 16 6 4.6972 0.3183 -0.3484 17 6 6.1537 -0.1393 -0.2477 18 1 6.2550 -0.8511 0.5716 19 6 6.5697 -0.8086 -1.5592 20 7 7.0136 1.0199 0.0033 21 6 8.2061 0.8556 0.6094 22 8 8.5659 -0.2537 0.9524 23 6 9.0766 2.0246 0.8571 24 6 8.6690 3.2989 0.4594 25 6 9.4842 4.3861 0.6975 26 6 10.7078 4.2140 1.3200 27 6 11.1200 2.9529 1.7125 28 6 10.3122 1.8579 1.4845 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6212 1.4026 -0.9314 34 1 1.4888 1.6966 2.5460 35 1 3.0990 1.3602 3.2259 36 1 1.7319 3.9741 5.4301 37 1 4.6125 1.0953 -1.1082 38 1 4.0681 -0.5284 -0.6229 39 1 5.9298 -1.6711 -1.7459 40 1 6.4683 -0.0968 -2.3785 41 1 7.6072 -1.1350 -1.4873 42 1 6.7265 1.9050 -0.2705 43 1 7.7159 3.4340 -0.0303 44 1 9.1684 5.3732 0.3935 45 1 11.3442 5.0679 1.5000 46 1 12.0760 2.8254 2.1983 47 1 10.6353 0.8739 1.7910 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359382649.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:03 Heat of formation + Delta-G solvation = -27.931047 kcal Electronic energy + Delta-G solvation = -28303.458600 eV Core-core repulsion = 24451.675647 eV Total energy + Delta-G solvation = -3851.782953 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.21432 -39.20883 -38.12839 -35.95419 -35.27392 -33.21822 -32.28745 -32.04215 -30.97041 -30.33581 -28.63091 -26.93539 -25.39429 -24.18910 -22.93326 -22.53608 -21.17950 -20.25677 -19.97883 -18.55264 -17.89761 -16.64067 -16.40354 -16.28111 -15.99780 -15.48503 -15.06652 -14.75973 -14.66637 -14.56269 -14.33609 -14.01801 -13.67204 -13.46076 -13.25286 -12.99997 -12.87206 -12.45707 -12.41011 -12.19945 -11.87496 -11.72645 -11.71197 -11.64660 -11.27538 -11.16158 -11.04528 -10.90524 -10.86775 -10.61635 -10.21593 -9.72786 -9.65049 -9.22095 -9.09228 -9.03650 -8.94123 -8.74891 -8.45759 -7.69999 -6.06285 -4.11133 0.87582 1.32138 2.41458 3.01663 3.26682 3.28905 3.34139 3.36427 3.44001 3.92568 3.94741 4.41649 4.69715 4.75969 4.86407 4.89101 4.93230 5.07474 5.17280 5.24354 5.28085 5.31829 5.35492 5.43541 5.45299 5.53302 5.63657 5.64487 5.73386 5.75961 5.91415 5.97727 6.07698 6.15635 6.23285 6.28383 6.35857 6.37385 6.66085 6.75842 6.83247 6.87889 7.06908 7.44309 7.53089 7.68514 7.89931 8.21384 8.39155 8.42387 8.88182 9.07763 9.53947 11.01872 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.008471 B = 0.004400 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3304.532321 B = 6362.370170 C = 8951.517067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.169 4.169 3 C 0.136 3.864 4 N -0.595 5.595 5 C 0.248 3.752 6 C -0.524 4.524 7 H 0.056 0.944 8 C 0.061 3.939 9 N -0.893 5.893 10 Si 0.896 3.104 11 H -0.274 1.274 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.499 3.501 15 O -0.527 6.527 16 C -0.153 4.153 17 C 0.159 3.841 18 H 0.096 0.904 19 C -0.161 4.161 20 N -0.705 5.705 21 C 0.567 3.433 22 O -0.543 6.543 23 C -0.127 4.127 24 C -0.082 4.082 25 C -0.128 4.128 26 C -0.099 4.099 27 C -0.131 4.131 28 C -0.063 4.063 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.062 0.938 42 H 0.397 0.603 43 H 0.126 0.874 44 H 0.128 0.872 45 H 0.124 0.876 46 H 0.127 0.873 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.034 -2.694 -14.758 17.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.188 4.188 3 C 0.012 3.988 4 N -0.326 5.326 5 C 0.128 3.872 6 C -0.563 4.563 7 H 0.075 0.925 8 C -0.141 4.141 9 N -0.532 5.532 10 Si 0.724 3.276 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.285 3.715 15 O -0.404 6.404 16 C -0.194 4.194 17 C 0.054 3.946 18 H 0.114 0.886 19 C -0.220 4.220 20 N -0.355 5.355 21 C 0.354 3.646 22 O -0.421 6.421 23 C -0.130 4.130 24 C -0.101 4.101 25 C -0.146 4.146 26 C -0.118 4.118 27 C -0.149 4.149 28 C -0.081 4.081 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.122 0.878 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.120 0.880 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.081 0.919 42 H 0.232 0.768 43 H 0.143 0.857 44 H 0.145 0.855 45 H 0.142 0.858 46 H 0.145 0.855 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 9.598 -3.441 -13.805 17.162 hybrid contribution -0.328 1.559 0.062 1.594 sum 9.270 -1.883 -13.742 16.683 Atomic orbital electron populations 1.23820 0.95882 1.01758 1.00550 1.23432 0.96409 0.99056 0.99932 1.20571 0.93150 0.95294 0.89750 1.48242 1.10492 1.60369 1.13512 1.19255 0.95314 0.93729 0.78852 1.21432 1.40457 0.93296 1.01130 0.92525 1.24934 0.95109 0.98662 0.95380 1.69947 1.42094 1.36022 1.05149 0.86480 0.77926 0.85118 0.78094 1.19849 1.20979 1.20892 1.20282 0.82466 0.79054 0.89649 1.90731 1.52302 1.55647 1.41703 1.22133 0.96671 1.02844 0.97755 1.20673 0.87289 0.88381 0.98258 0.88564 1.22192 1.02444 1.00585 0.96757 1.45719 1.18406 1.10811 1.60590 1.18111 0.81277 0.88340 0.76871 1.90726 1.73872 1.25915 1.51600 1.20018 0.96277 0.93491 1.03239 1.21349 0.99078 0.91894 0.97749 1.21117 0.94655 0.98846 0.99938 1.21344 0.96195 0.97347 0.96874 1.21134 1.00202 0.92534 1.01031 1.21280 0.92300 0.99713 0.94855 0.88799 0.88311 0.87790 0.89559 0.90848 0.95123 0.93971 0.92779 0.89053 0.88027 0.91519 0.92492 0.91869 0.76814 0.85651 0.85450 0.85761 0.85501 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.26 14.32 29.02 0.42 -1.85 16 2 C -0.17 -2.26 9.74 -36.03 -0.35 -2.61 16 3 C 0.14 2.06 5.65 -5.19 -0.03 2.03 16 4 N -0.59 -11.92 2.44 -176.43 -0.43 -12.35 16 5 C 0.25 6.37 5.16 -5.19 -0.03 6.34 16 6 C -0.52 -14.51 9.39 -34.44 -0.32 -14.83 16 7 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -26.50 13.29 55.43 0.74 -25.77 16 10 Si 0.90 21.58 29.54 -169.99 -5.02 16.55 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 12 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.50 9.71 7.53 -10.98 -0.08 9.62 16 15 O -0.53 -12.84 14.93 5.56 0.08 -12.76 16 16 C -0.15 -2.02 3.80 -27.88 -0.11 -2.12 16 17 C 0.16 2.23 2.13 -67.93 -0.14 2.08 16 18 H 0.10 1.66 7.39 -51.93 -0.38 1.28 16 19 C -0.16 -1.73 9.48 37.16 0.35 -1.38 16 20 N -0.70 -10.46 4.17 -54.75 -0.23 -10.69 16 21 C 0.57 9.55 7.74 -12.33 -0.10 9.45 16 22 O -0.54 -10.67 16.01 5.32 0.09 -10.59 16 23 C -0.13 -1.89 5.87 -104.97 -0.62 -2.51 16 24 C -0.08 -1.06 9.54 -39.19 -0.37 -1.43 16 25 C -0.13 -1.44 10.03 -39.64 -0.40 -1.84 16 26 C -0.10 -1.04 10.04 -39.49 -0.40 -1.44 16 27 C -0.13 -1.45 10.03 -39.64 -0.40 -1.85 16 28 C -0.06 -0.85 9.60 -39.19 -0.38 -1.23 16 29 H 0.09 1.01 8.06 -52.49 -0.42 0.58 16 30 H 0.10 1.21 7.84 -52.49 -0.41 0.80 16 31 H 0.10 1.30 7.83 -52.49 -0.41 0.89 16 32 H 0.09 1.38 7.72 -51.93 -0.40 0.98 16 33 H 0.07 0.88 6.44 -51.93 -0.33 0.54 16 34 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 37 H 0.09 0.98 7.40 -51.93 -0.38 0.60 16 38 H 0.10 1.10 7.78 -51.93 -0.40 0.69 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.40 5.23 6.64 -40.82 -0.27 4.95 16 43 H 0.13 1.43 6.41 -52.49 -0.34 1.10 16 44 H 0.13 1.16 8.06 -52.48 -0.42 0.73 16 45 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 46 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 47 H 0.13 1.81 7.65 -52.48 -0.40 1.40 16 LS Contribution 398.58 15.07 6.01 6.01 Total: -1.00 -35.64 398.58 -8.86 -44.50 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -7.05 Total: 7.00 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -3.05 Total: -1.92 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: 0.08 Total: -48.81 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: 0.17 Total: -23.34 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.64 -8.86 -44.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359382649.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.572 kcal (2) G-P(sol) polarization free energy of solvation -35.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds