Wall clock time and date at job start Tue Mar 31 2020 15:38:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50699 * 119.99955 * 2 1 4 4 N 1.46501 * 109.47113 * 125.00470 * 3 2 1 5 5 C 1.46505 * 119.99572 * 270.00092 * 4 3 2 6 6 C 1.50700 * 109.46797 * 269.99890 * 5 4 3 7 7 H 1.07996 * 120.00698 * 0.02562 * 6 5 4 8 8 C 1.37880 * 119.99730 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00064 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99896 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47119 * 0.02562 * 10 8 6 12 12 H 1.48505 * 109.46751 * 119.99892 * 10 8 6 13 13 H 1.48499 * 109.47092 * 239.99798 * 10 8 6 14 14 C 1.34771 * 120.00297 * 89.99764 * 4 3 2 15 15 O 1.21279 * 119.99941 * 180.02562 * 14 4 3 16 16 C 1.50706 * 119.99858 * 0.02562 * 14 4 3 17 17 C 1.52999 * 109.46603 * 179.97438 * 16 14 4 18 18 H 1.08999 * 109.47014 * 55.00679 * 17 16 14 19 19 C 1.53008 * 109.46675 * 175.00260 * 17 16 14 20 20 N 1.46499 * 109.47493 * 295.00080 * 17 16 14 21 21 C 1.34777 * 119.99665 * 155.28120 * 20 17 16 22 22 O 1.21553 * 120.00289 * 359.72074 * 21 20 17 23 23 C 1.47846 * 119.99557 * 179.72375 * 21 20 17 24 24 C 1.39575 * 120.14570 * 359.72055 * 23 21 20 25 25 C 1.37955 * 119.85022 * 179.78726 * 24 23 21 26 26 C 1.38362 * 120.14738 * 0.49095 * 25 24 23 27 27 C 1.38361 * 120.29120 * 359.74322 * 26 25 24 28 28 C 1.37957 * 120.14182 * 0.02562 * 27 26 25 29 29 H 1.08002 * 120.00204 * 179.97438 * 1 2 3 30 30 H 1.07999 * 120.00217 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.00217 * 180.02562 * 2 1 3 32 32 H 1.08997 * 109.46999 * 5.00435 * 3 2 1 33 33 H 1.08997 * 109.47038 * 245.00517 * 3 2 1 34 34 H 1.08999 * 109.47584 * 29.99736 * 5 4 3 35 35 H 1.09002 * 109.47000 * 149.99988 * 5 4 3 36 36 H 0.97007 * 119.99654 * 180.02562 * 9 8 6 37 37 H 1.08998 * 109.46851 * 59.99874 * 16 14 4 38 38 H 1.08993 * 109.47183 * 299.99659 * 16 14 4 39 39 H 1.09005 * 109.46722 * 300.00264 * 19 17 16 40 40 H 1.09000 * 109.47169 * 59.99905 * 19 17 16 41 41 H 1.08995 * 109.47066 * 180.02562 * 19 17 16 42 42 H 0.97001 * 119.99790 * 334.99833 * 20 17 16 43 43 H 1.08001 * 120.07522 * 0.02562 * 24 23 21 44 44 H 1.08007 * 119.92736 * 180.22839 * 25 24 23 45 45 H 1.08004 * 119.85306 * 179.71843 * 26 25 24 46 46 H 1.07995 * 119.92745 * 180.02562 * 27 26 25 47 47 H 1.08008 * 120.06811 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.5589 1.8648 2.4248 6 6 2.8443 3.3435 2.4804 7 1 3.3032 3.8371 1.6365 8 6 2.5193 4.0664 3.6086 9 7 1.9609 3.4654 4.6365 10 14 2.8737 5.8992 3.6778 11 1 3.5014 6.3305 2.4029 12 1 1.6035 6.6417 3.8796 13 1 3.7973 6.1826 4.8056 14 6 4.2497 0.8661 0.9823 15 8 5.0197 0.8879 1.9191 16 6 4.6972 0.3183 -0.3484 17 6 6.1537 -0.1393 -0.2477 18 1 6.2550 -0.8511 0.5716 19 6 6.5697 -0.8086 -1.5592 20 7 7.0136 1.0199 0.0033 21 6 8.2061 0.8556 0.6094 22 8 8.5659 -0.2537 0.9524 23 6 9.0766 2.0246 0.8571 24 6 8.6690 3.2989 0.4594 25 6 9.4842 4.3861 0.6975 26 6 10.7078 4.2140 1.3200 27 6 11.1200 2.9529 1.7125 28 6 10.3122 1.8579 1.4845 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3585 2.1316 0.0896 33 1 2.6212 1.4026 -0.9314 34 1 1.4888 1.6966 2.5460 35 1 3.0990 1.3602 3.2259 36 1 1.7319 3.9741 5.4301 37 1 4.6125 1.0953 -1.1082 38 1 4.0681 -0.5284 -0.6229 39 1 5.9298 -1.6711 -1.7459 40 1 6.4683 -0.0968 -2.3785 41 1 7.6072 -1.1350 -1.4873 42 1 6.7265 1.9050 -0.2705 43 1 7.7159 3.4340 -0.0303 44 1 9.1684 5.3732 0.3935 45 1 11.3442 5.0679 1.5000 46 1 12.0760 2.8254 2.1983 47 1 10.6353 0.8739 1.7910 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359382649.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:03 Heat of formation + Delta-G solvation = -50.536788 kcal Electronic energy + Delta-G solvation = -28304.438858 eV Core-core repulsion = 24451.675647 eV Total energy + Delta-G solvation = -3852.763211 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.43232 -40.61227 -39.22854 -37.35157 -36.62585 -35.09882 -33.63561 -33.35721 -31.90504 -31.41723 -30.14132 -28.39997 -26.81253 -25.34529 -24.65796 -23.51906 -22.34423 -21.44035 -21.11062 -19.95442 -19.02003 -18.62505 -17.84050 -17.54734 -17.28531 -16.82818 -16.26775 -16.19349 -16.03518 -15.79291 -15.52315 -15.34220 -14.76296 -14.63958 -14.43011 -14.28808 -14.15371 -13.93491 -13.60921 -13.37897 -13.25994 -13.07155 -12.94299 -12.79314 -12.73773 -12.62161 -12.58335 -12.22535 -12.15094 -12.06829 -11.91627 -11.63180 -10.99771 -10.65355 -10.56983 -10.28327 -10.18234 -9.96821 -9.84185 -9.41850 -8.21573 -6.36227 -0.12500 0.39695 1.34860 1.36605 1.38325 1.49651 1.86248 1.91161 2.21637 2.34382 2.51838 2.91437 3.08641 3.62323 3.67567 3.77829 3.90207 4.00682 4.10295 4.16731 4.22083 4.28012 4.40609 4.45363 4.51010 4.54204 4.62808 4.66801 4.81119 4.84617 4.89003 5.02734 5.03800 5.07375 5.09429 5.24584 5.31885 5.34220 5.43450 5.47485 5.53428 5.55003 5.74433 5.78401 5.94220 5.99145 6.07518 6.50601 6.72186 6.83148 7.20850 7.30306 7.54228 8.85878 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.008471 B = 0.004400 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3304.532321 B = 6362.370170 C = 8951.517067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.183 4.183 3 C 0.133 3.867 4 N -0.599 5.599 5 C 0.265 3.735 6 C -0.534 4.534 7 H 0.059 0.941 8 C 0.004 3.996 9 N -0.932 5.932 10 Si 0.966 3.034 11 H -0.259 1.259 12 H -0.271 1.271 13 H -0.286 1.286 14 C 0.491 3.509 15 O -0.588 6.588 16 C -0.134 4.134 17 C 0.155 3.845 18 H 0.053 0.947 19 C -0.149 4.149 20 N -0.699 5.699 21 C 0.556 3.444 22 O -0.587 6.587 23 C -0.157 4.157 24 C -0.092 4.092 25 C -0.131 4.131 26 C -0.092 4.092 27 C -0.130 4.130 28 C -0.084 4.084 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.074 0.926 33 H 0.115 0.885 34 H 0.016 0.984 35 H -0.011 1.011 36 H 0.265 0.735 37 H 0.131 0.869 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.042 0.958 42 H 0.405 0.595 43 H 0.135 0.865 44 H 0.154 0.846 45 H 0.160 0.840 46 H 0.155 0.845 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.119 -0.669 -17.638 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.202 4.202 3 C 0.011 3.989 4 N -0.329 5.329 5 C 0.144 3.856 6 C -0.573 4.573 7 H 0.077 0.923 8 C -0.194 4.194 9 N -0.572 5.572 10 Si 0.790 3.210 11 H -0.183 1.183 12 H -0.197 1.197 13 H -0.212 1.212 14 C 0.280 3.720 15 O -0.469 6.469 16 C -0.174 4.174 17 C 0.050 3.950 18 H 0.072 0.928 19 C -0.207 4.207 20 N -0.349 5.349 21 C 0.345 3.655 22 O -0.469 6.469 23 C -0.160 4.160 24 C -0.111 4.111 25 C -0.149 4.149 26 C -0.110 4.110 27 C -0.147 4.147 28 C -0.103 4.103 29 H 0.132 0.868 30 H 0.115 0.885 31 H 0.135 0.865 32 H 0.092 0.908 33 H 0.133 0.867 34 H 0.034 0.966 35 H 0.007 0.993 36 H 0.074 0.926 37 H 0.149 0.851 38 H 0.155 0.845 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.241 0.759 43 H 0.153 0.847 44 H 0.172 0.828 45 H 0.178 0.822 46 H 0.172 0.828 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.637 -1.411 -16.761 19.385 hybrid contribution -0.391 0.915 0.999 1.411 sum 9.245 -0.496 -15.761 18.280 Atomic orbital electron populations 1.24034 0.95770 1.02685 0.98747 1.23388 0.96734 0.98592 1.01478 1.20855 0.92763 0.96017 0.89303 1.48214 1.11843 1.60010 1.12850 1.18627 0.93452 0.92827 0.80723 1.21729 1.40079 0.94196 1.01279 0.92266 1.25893 0.94803 1.03770 0.94950 1.70083 1.43230 1.38049 1.05854 0.85390 0.78102 0.79109 0.78375 1.18269 1.19676 1.21250 1.21386 0.81407 0.77828 0.91351 1.90712 1.53901 1.57904 1.44363 1.22133 0.96062 1.04881 0.94294 1.20757 0.87933 0.87604 0.98692 0.92837 1.22090 1.01621 1.01740 0.95230 1.45753 1.17840 1.11554 1.59761 1.18598 0.81984 0.88530 0.76425 1.90680 1.74975 1.27607 1.53615 1.20061 0.96851 0.93657 1.05427 1.21536 0.99932 0.91594 0.97994 1.21513 0.94652 0.99386 0.99318 1.21804 0.96136 0.98029 0.95060 1.21469 1.00774 0.92074 1.00410 1.21394 0.92767 1.00337 0.95789 0.86835 0.88511 0.86527 0.90779 0.86677 0.96613 0.99300 0.92622 0.85150 0.84529 0.89138 0.89817 0.93833 0.75863 0.84746 0.82788 0.82210 0.82780 0.86005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.97 14.32 67.78 0.97 -3.00 16 2 C -0.18 -4.50 9.74 25.65 0.25 -4.25 16 3 C 0.13 3.75 5.65 85.63 0.48 4.24 16 4 N -0.60 -24.08 2.44 -830.50 -2.03 -26.10 16 5 C 0.27 14.24 5.16 85.63 0.44 14.68 16 6 C -0.53 -30.15 9.39 25.60 0.24 -29.91 16 7 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 8 C 0.00 0.25 5.46 84.66 0.46 0.71 16 9 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 10 Si 0.97 44.28 29.54 68.60 2.03 46.31 16 11 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 12 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 13 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 14 C 0.49 19.20 7.53 87.66 0.66 19.86 16 15 O -0.59 -30.18 14.93 -3.03 -0.05 -30.22 16 16 C -0.13 -3.21 3.80 29.85 0.11 -3.10 16 17 C 0.15 4.29 2.13 44.99 0.10 4.39 16 18 H 0.05 1.96 7.39 -2.39 -0.02 1.94 16 19 C -0.15 -2.90 9.48 71.98 0.68 -2.21 16 20 N -0.70 -21.13 4.17 -445.40 -1.86 -22.98 16 21 C 0.56 19.88 7.74 86.79 0.67 20.56 16 22 O -0.59 -25.01 16.01 -3.88 -0.06 -25.07 16 23 C -0.16 -4.85 5.87 -20.09 -0.12 -4.96 16 24 C -0.09 -2.32 9.54 22.53 0.21 -2.11 16 25 C -0.13 -2.65 10.03 22.23 0.22 -2.43 16 26 C -0.09 -1.68 10.04 22.33 0.22 -1.45 16 27 C -0.13 -2.71 10.03 22.23 0.22 -2.49 16 28 C -0.08 -2.37 9.60 22.53 0.22 -2.15 16 29 H 0.11 2.13 8.06 -2.91 -0.02 2.11 16 30 H 0.10 2.23 7.84 -2.91 -0.02 2.20 16 31 H 0.12 2.58 7.83 -2.91 -0.02 2.56 16 32 H 0.07 2.28 7.72 -2.39 -0.02 2.26 16 33 H 0.12 2.27 6.44 -2.39 -0.02 2.25 16 34 H 0.02 0.88 8.07 -2.39 -0.02 0.86 16 35 H -0.01 -0.71 7.42 -2.39 -0.02 -0.73 16 36 H 0.26 15.20 8.31 -92.70 -0.77 14.43 16 37 H 0.13 2.19 7.40 -2.39 -0.02 2.17 16 38 H 0.14 2.40 7.78 -2.39 -0.02 2.39 16 39 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 40 H 0.08 1.20 8.14 -2.39 -0.02 1.19 16 41 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.40 10.50 6.64 -92.71 -0.62 9.88 16 43 H 0.13 2.97 6.41 -2.91 -0.02 2.96 16 44 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 45 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 46 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 47 H 0.12 3.60 7.65 -2.91 -0.02 3.58 16 Total: -1.00 -85.37 398.58 4.73 -80.64 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.35 Total: 27.73 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 6.06 Total: 6.37 kcal Atomic # 7 Polarization: -102.16 SS G_CDS: -3.60 Total: -105.76 kcal Atomic # 8 Polarization: -55.19 SS G_CDS: -0.11 Total: -55.30 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -85.37 4.73 -80.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359382649.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.105 kcal (2) G-P(sol) polarization free energy of solvation -85.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds