Wall clock time and date at job start Tue Mar 31 2020 15:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46722 * 2 1 4 4 C 1.50692 * 109.47175 * 119.99620 * 2 1 3 5 5 H 1.07999 * 120.00092 * 120.00313 * 4 2 1 6 6 C 1.37876 * 120.00238 * 300.00579 * 4 2 1 7 7 N 1.31517 * 120.00312 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99962 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.47127 * 90.00255 * 8 6 4 10 10 H 1.48501 * 109.47568 * 210.00053 * 8 6 4 11 11 H 1.48499 * 109.47068 * 330.00226 * 8 6 4 12 12 N 1.46503 * 109.47396 * 239.99935 * 2 1 3 13 13 C 1.34780 * 119.99784 * 84.99954 * 12 2 1 14 14 O 1.21284 * 119.99973 * 359.97438 * 13 12 2 15 15 C 1.50694 * 119.99546 * 180.02562 * 13 12 2 16 16 H 1.08994 * 109.58912 * 351.83511 * 15 13 12 17 17 C 1.53196 * 109.58537 * 231.54886 * 15 13 12 18 18 C 1.53039 * 109.34041 * 185.56395 * 17 15 13 19 19 C 1.53095 * 109.50599 * 61.35002 * 18 17 15 20 20 C 1.53195 * 109.33258 * 298.65787 * 19 18 17 21 21 N 1.46923 * 109.58659 * 112.26361 * 15 13 12 22 22 C 1.34776 * 120.63241 * 353.41560 * 21 15 13 23 23 O 1.21550 * 120.00054 * 5.52059 * 22 21 15 24 24 C 1.47848 * 120.00012 * 185.52795 * 22 21 15 25 25 C 1.39575 * 120.14937 * 101.05767 * 24 22 21 26 26 C 1.37956 * 119.85679 * 179.78830 * 25 24 22 27 27 C 1.38359 * 120.14147 * 0.48771 * 26 25 24 28 28 C 1.38362 * 120.29373 * 359.74349 * 27 26 25 29 29 C 1.37956 * 120.14380 * 0.02562 * 28 27 26 30 30 H 1.08994 * 109.47436 * 300.00324 * 1 2 3 31 31 H 1.09004 * 109.47318 * 60.00597 * 1 2 3 32 32 H 1.09005 * 109.46672 * 179.97438 * 1 2 3 33 33 H 0.97003 * 120.00287 * 179.97438 * 7 6 4 34 34 H 0.96999 * 119.99982 * 264.99974 * 12 2 1 35 35 H 1.09002 * 109.49907 * 305.53081 * 17 15 13 36 36 H 1.09002 * 109.49248 * 65.59665 * 17 15 13 37 37 H 1.09000 * 109.45853 * 181.40761 * 18 17 15 38 38 H 1.08997 * 109.45994 * 301.35813 * 18 17 15 39 39 H 1.09004 * 109.49189 * 178.70094 * 19 18 17 40 40 H 1.09000 * 109.51736 * 58.62800 * 19 18 17 41 41 H 1.09006 * 109.58672 * 294.84880 * 20 19 18 42 42 H 1.09001 * 109.70887 * 174.49241 * 20 19 18 43 43 H 1.08003 * 120.06945 * 0.02562 * 25 24 22 44 44 H 1.07997 * 119.92857 * 180.22764 * 26 25 24 45 45 H 1.08000 * 119.85746 * 179.76397 * 27 26 25 46 46 H 1.08007 * 119.92594 * 179.97438 * 28 27 26 47 47 H 1.08002 * 120.07060 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6533 -1.5883 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1371 -0.8595 3.5566 8 14 0.6257 1.2798 2.6540 9 1 -0.8022 0.8744 2.6992 10 1 0.9769 1.9954 3.9070 11 1 0.8489 2.1773 1.4922 12 7 2.0184 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8582 1.1584 -2.4117 15 6 2.6490 -0.7288 -3.5876 16 1 2.9910 -1.7281 -3.3186 17 6 3.8082 0.0630 -4.2010 18 6 4.2220 -0.5867 -5.5234 19 6 3.0435 -0.5535 -6.5001 20 6 1.8756 -1.3522 -5.9129 21 7 1.5667 -0.8252 -4.5766 22 6 0.3144 -0.4370 -4.2641 23 8 0.0912 0.0902 -3.1919 24 6 -0.7879 -0.6527 -5.2255 25 6 -1.6692 -1.7213 -5.0534 26 6 -2.6983 -1.9144 -5.9517 27 6 -2.8517 -1.0574 -7.0270 28 6 -1.9788 0.0010 -7.2062 29 6 -0.9483 0.2080 -6.3126 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.9031 -0.5278 4.4376 34 1 2.2491 -1.6318 -1.1526 35 1 3.4911 1.0897 -4.3836 36 1 4.6543 0.0602 -3.5138 37 1 5.0631 -0.0396 -5.9492 38 1 4.5155 -1.6209 -5.3437 39 1 3.3455 -0.9954 -7.4496 40 1 2.7334 0.4789 -6.6616 41 1 2.1539 -2.4033 -5.8358 42 1 1.0014 -1.2520 -6.5563 43 1 -1.5480 -2.3933 -4.2166 44 1 -3.3830 -2.7387 -5.8175 45 1 -3.6567 -1.2151 -7.7296 46 1 -2.1038 0.6661 -8.0480 47 1 -0.2674 1.0343 -6.4538 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363363019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:50 Heat of formation + Delta-G solvation = -30.443930 kcal Electronic energy + Delta-G solvation = -29479.742455 eV Core-core repulsion = 25627.850536 eV Total energy + Delta-G solvation = -3851.891919 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.91991 -39.19257 -37.75138 -37.23243 -34.70996 -33.07339 -32.28408 -31.76504 -31.21366 -30.86209 -29.47112 -26.03954 -24.97458 -23.97752 -23.60858 -22.78113 -21.25113 -21.03532 -19.56042 -19.17833 -17.89876 -16.96833 -16.41811 -16.17811 -15.84971 -15.49353 -15.32853 -14.91308 -14.64261 -14.49571 -13.93836 -13.91716 -13.71048 -13.64715 -13.59884 -13.13060 -12.89359 -12.77458 -12.65589 -12.39492 -11.91932 -11.88416 -11.61444 -11.55472 -11.33440 -11.22899 -11.02979 -10.97402 -10.82927 -10.64526 -10.02466 -9.57632 -9.46616 -9.22002 -9.04079 -9.00405 -8.82870 -8.65576 -8.60737 -7.84275 -6.10098 -4.10795 0.91699 1.12812 2.64445 2.68844 3.34986 3.44585 3.48001 3.53415 3.79829 3.96227 4.43190 4.44309 4.57307 4.65248 4.69298 4.72529 4.79198 4.85697 4.96402 5.10709 5.16117 5.26039 5.27910 5.31131 5.32005 5.51282 5.56507 5.59807 5.70900 5.72333 5.75275 5.88895 5.93428 6.11883 6.19223 6.21629 6.25457 6.40356 6.57018 6.65282 6.72748 6.86647 7.17776 7.30979 7.41493 7.53374 7.77023 8.23017 8.33383 8.74061 8.89006 9.26559 9.53764 11.02240 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013270 B = 0.004009 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.449683 B = 6982.777414 C = 8412.496606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.245 3.755 3 H 0.044 0.956 4 C -0.531 4.531 5 H 0.078 0.922 6 C 0.077 3.923 7 N -0.897 5.897 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.296 1.296 11 H -0.262 1.262 12 N -0.701 5.701 13 C 0.525 3.475 14 O -0.538 6.538 15 C 0.127 3.873 16 H 0.085 0.915 17 C -0.122 4.122 18 C -0.117 4.117 19 C -0.135 4.135 20 C 0.110 3.890 21 N -0.599 5.599 22 C 0.544 3.456 23 O -0.469 6.469 24 C -0.106 4.106 25 C -0.083 4.083 26 C -0.119 4.119 27 C -0.110 4.110 28 C -0.121 4.121 29 C -0.091 4.091 30 H 0.038 0.962 31 H 0.050 0.950 32 H 0.044 0.956 33 H 0.265 0.735 34 H 0.388 0.612 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.087 0.913 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.124 0.876 46 H 0.127 0.873 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.819 -4.219 -26.843 27.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.142 3.858 3 H 0.062 0.938 4 C -0.569 4.569 5 H 0.096 0.904 6 C -0.126 4.126 7 N -0.535 5.535 8 Si 0.717 3.283 9 H -0.204 1.204 10 H -0.224 1.224 11 H -0.187 1.187 12 N -0.350 5.350 13 C 0.309 3.691 14 O -0.415 6.415 15 C 0.020 3.980 16 H 0.103 0.897 17 C -0.160 4.160 18 C -0.155 4.155 19 C -0.173 4.173 20 C -0.013 4.013 21 N -0.335 5.335 22 C 0.330 3.670 23 O -0.341 6.341 24 C -0.109 4.109 25 C -0.102 4.102 26 C -0.137 4.137 27 C -0.128 4.128 28 C -0.139 4.139 29 C -0.110 4.110 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.221 0.779 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.146 0.854 44 H 0.146 0.854 45 H 0.142 0.858 46 H 0.144 0.856 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.165 -3.062 -26.037 26.406 hybrid contribution -0.522 0.157 0.246 0.598 sum -3.687 -2.905 -25.790 26.214 Atomic orbital electron populations 1.22372 0.99215 1.00405 0.99433 1.18953 0.90265 0.94225 0.82378 0.93846 1.21116 1.32806 1.14194 0.88783 0.90420 1.24813 0.95505 0.96717 0.95532 1.69880 1.45376 1.40272 0.97947 0.86852 0.80568 0.83740 0.77144 1.20442 1.22413 1.18667 1.46010 1.65925 1.13150 1.09907 1.19586 0.77931 0.87738 0.83831 1.90626 1.49845 1.16683 1.84356 1.21314 0.87885 1.00061 0.88740 0.89695 1.21808 0.96813 1.00498 0.96898 1.21527 0.97621 1.01272 0.95081 1.21937 0.95502 1.01238 0.98663 1.21753 0.98992 0.97601 0.82931 1.47929 1.07243 1.64899 1.13470 1.18615 0.82370 0.78653 0.87340 1.91035 1.81391 1.38842 1.22797 1.19883 0.97379 0.97674 0.96004 1.21149 0.93917 0.96251 0.98884 1.21106 0.97863 0.99903 0.94808 1.21290 0.98917 0.94894 0.97740 1.21087 0.95134 0.98169 0.99496 1.21176 0.98379 0.98402 0.92999 0.94332 0.93084 0.93653 0.92474 0.77926 0.90165 0.90233 0.91261 0.91568 0.90635 0.91324 0.91228 0.89467 0.85441 0.85448 0.85790 0.85553 0.85629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.97 8.96 37.16 0.33 -3.64 16 2 C 0.25 6.39 2.15 -69.09 -0.15 6.25 16 3 H 0.04 1.25 6.63 -51.93 -0.34 0.91 16 4 C -0.53 -15.19 9.31 -34.44 -0.32 -15.51 16 5 H 0.08 2.31 7.98 -52.49 -0.42 1.89 16 6 C 0.08 2.28 5.45 -17.82 -0.10 2.18 16 7 N -0.90 -27.60 13.96 55.43 0.77 -26.83 16 8 Si 0.89 23.34 24.37 -169.99 -4.14 19.20 16 9 H -0.28 -7.13 6.87 56.52 0.39 -6.74 16 10 H -0.30 -7.66 7.11 56.52 0.40 -7.26 16 11 H -0.26 -6.96 6.53 56.52 0.37 -6.60 16 12 N -0.70 -15.34 5.07 -54.94 -0.28 -15.61 16 13 C 0.52 10.80 4.30 -10.99 -0.05 10.75 16 14 O -0.54 -13.27 14.23 -19.16 -0.27 -13.55 16 15 C 0.13 1.86 3.32 -68.75 -0.23 1.63 16 16 H 0.09 1.07 7.94 -51.93 -0.41 0.66 16 17 C -0.12 -1.52 5.28 -26.61 -0.14 -1.66 16 18 C -0.12 -1.01 5.89 -26.66 -0.16 -1.17 16 19 C -0.14 -1.05 6.08 -26.58 -0.16 -1.22 16 20 C 0.11 0.99 6.30 -3.70 -0.02 0.96 16 21 N -0.60 -7.98 2.97 -167.63 -0.50 -8.48 16 22 C 0.54 8.77 7.00 -12.33 -0.09 8.68 16 23 O -0.47 -10.04 11.29 -19.39 -0.22 -10.26 16 24 C -0.11 -1.36 4.16 -104.97 -0.44 -1.80 16 25 C -0.08 -0.95 9.79 -39.19 -0.38 -1.33 16 26 C -0.12 -1.07 10.03 -39.64 -0.40 -1.47 16 27 C -0.11 -0.89 10.04 -39.49 -0.40 -1.29 16 28 C -0.12 -1.03 10.03 -39.64 -0.40 -1.43 16 29 C -0.09 -0.98 8.69 -39.19 -0.34 -1.32 16 30 H 0.04 1.00 3.27 -51.93 -0.17 0.83 16 31 H 0.05 1.31 6.71 -51.93 -0.35 0.96 16 32 H 0.04 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.27 7.68 8.31 -40.82 -0.34 7.34 16 34 H 0.39 7.54 8.40 -40.82 -0.34 7.19 16 35 H 0.08 1.18 7.83 -51.93 -0.41 0.77 16 36 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 0.72 5.57 -51.93 -0.29 0.43 16 43 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 44 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 46 H 0.13 0.78 8.06 -52.48 -0.42 0.35 16 47 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 LS Contribution 369.11 15.07 5.56 5.56 Total: -1.00 -36.84 369.11 -9.49 -46.33 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.99 Total: 5.01 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -3.43 Total: -1.37 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: 0.00 Total: -50.92 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: -0.49 Total: -23.81 kcal Atomic # 14 Polarization: 23.34 SS G_CDS: -4.14 Total: 19.20 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.84 -9.49 -46.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363363019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.886 kcal (2) G-P(sol) polarization free energy of solvation -36.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds