Wall clock time and date at job start Tue Mar 31 2020 15:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.46722 * 2 1 4 4 C 1.50692 * 109.47175 * 119.99620 * 2 1 3 5 5 H 1.07999 * 120.00092 * 120.00313 * 4 2 1 6 6 C 1.37876 * 120.00238 * 300.00579 * 4 2 1 7 7 N 1.31517 * 120.00312 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 119.99962 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.47127 * 90.00255 * 8 6 4 10 10 H 1.48501 * 109.47568 * 210.00053 * 8 6 4 11 11 H 1.48499 * 109.47068 * 330.00226 * 8 6 4 12 12 N 1.46503 * 109.47396 * 239.99935 * 2 1 3 13 13 C 1.34780 * 119.99784 * 84.99954 * 12 2 1 14 14 O 1.21284 * 119.99973 * 359.97438 * 13 12 2 15 15 C 1.50694 * 119.99546 * 180.02562 * 13 12 2 16 16 H 1.08994 * 109.58912 * 351.83511 * 15 13 12 17 17 C 1.53196 * 109.58537 * 231.54886 * 15 13 12 18 18 C 1.53039 * 109.34041 * 185.56395 * 17 15 13 19 19 C 1.53095 * 109.50599 * 61.35002 * 18 17 15 20 20 C 1.53195 * 109.33258 * 298.65787 * 19 18 17 21 21 N 1.46923 * 109.58659 * 112.26361 * 15 13 12 22 22 C 1.34776 * 120.63241 * 353.41560 * 21 15 13 23 23 O 1.21550 * 120.00054 * 5.52059 * 22 21 15 24 24 C 1.47848 * 120.00012 * 185.52795 * 22 21 15 25 25 C 1.39575 * 120.14937 * 101.05767 * 24 22 21 26 26 C 1.37956 * 119.85679 * 179.78830 * 25 24 22 27 27 C 1.38359 * 120.14147 * 0.48771 * 26 25 24 28 28 C 1.38362 * 120.29373 * 359.74349 * 27 26 25 29 29 C 1.37956 * 120.14380 * 0.02562 * 28 27 26 30 30 H 1.08994 * 109.47436 * 300.00324 * 1 2 3 31 31 H 1.09004 * 109.47318 * 60.00597 * 1 2 3 32 32 H 1.09005 * 109.46672 * 179.97438 * 1 2 3 33 33 H 0.97003 * 120.00287 * 179.97438 * 7 6 4 34 34 H 0.96999 * 119.99982 * 264.99974 * 12 2 1 35 35 H 1.09002 * 109.49907 * 305.53081 * 17 15 13 36 36 H 1.09002 * 109.49248 * 65.59665 * 17 15 13 37 37 H 1.09000 * 109.45853 * 181.40761 * 18 17 15 38 38 H 1.08997 * 109.45994 * 301.35813 * 18 17 15 39 39 H 1.09004 * 109.49189 * 178.70094 * 19 18 17 40 40 H 1.09000 * 109.51736 * 58.62800 * 19 18 17 41 41 H 1.09006 * 109.58672 * 294.84880 * 20 19 18 42 42 H 1.09001 * 109.70887 * 174.49241 * 20 19 18 43 43 H 1.08003 * 120.06945 * 0.02562 * 25 24 22 44 44 H 1.07997 * 119.92857 * 180.22764 * 26 25 24 45 45 H 1.08000 * 119.85746 * 179.76397 * 27 26 25 46 46 H 1.08007 * 119.92594 * 179.97438 * 28 27 26 47 47 H 1.08002 * 120.07060 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 1 2.6533 -1.5883 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 2.1371 -0.8595 3.5566 8 14 0.6257 1.2798 2.6540 9 1 -0.8022 0.8744 2.6992 10 1 0.9769 1.9954 3.9070 11 1 0.8489 2.1773 1.4922 12 7 2.0184 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3571 14 8 1.8582 1.1584 -2.4117 15 6 2.6490 -0.7288 -3.5876 16 1 2.9910 -1.7281 -3.3186 17 6 3.8082 0.0630 -4.2010 18 6 4.2220 -0.5867 -5.5234 19 6 3.0435 -0.5535 -6.5001 20 6 1.8756 -1.3522 -5.9129 21 7 1.5667 -0.8252 -4.5766 22 6 0.3144 -0.4370 -4.2641 23 8 0.0912 0.0902 -3.1919 24 6 -0.7879 -0.6527 -5.2255 25 6 -1.6692 -1.7213 -5.0534 26 6 -2.6983 -1.9144 -5.9517 27 6 -2.8517 -1.0574 -7.0270 28 6 -1.9788 0.0010 -7.2062 29 6 -0.9483 0.2080 -6.3126 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.9031 -0.5278 4.4376 34 1 2.2491 -1.6318 -1.1526 35 1 3.4911 1.0897 -4.3836 36 1 4.6543 0.0602 -3.5138 37 1 5.0631 -0.0396 -5.9492 38 1 4.5155 -1.6209 -5.3437 39 1 3.3455 -0.9954 -7.4496 40 1 2.7334 0.4789 -6.6616 41 1 2.1539 -2.4033 -5.8358 42 1 1.0014 -1.2520 -6.5563 43 1 -1.5480 -2.3933 -4.2166 44 1 -3.3830 -2.7387 -5.8175 45 1 -3.6567 -1.2151 -7.7296 46 1 -2.1038 0.6661 -8.0480 47 1 -0.2674 1.0343 -6.4538 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363363019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:49 Heat of formation + Delta-G solvation = -55.238280 kcal Electronic energy + Delta-G solvation = -29480.817619 eV Core-core repulsion = 25627.850536 eV Total energy + Delta-G solvation = -3852.967083 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.10013 -40.28578 -39.08160 -38.32059 -36.69660 -34.38077 -34.06045 -32.94999 -31.94468 -31.81086 -31.21980 -27.28735 -26.99224 -24.96522 -24.61059 -23.51447 -22.90487 -21.96120 -21.25393 -20.30073 -19.34517 -18.41286 -17.67898 -17.48245 -17.30083 -16.96421 -16.50020 -15.98891 -15.94312 -15.45447 -15.37355 -15.13577 -14.80363 -14.76498 -14.64454 -14.52207 -14.39207 -14.06969 -14.01628 -13.73360 -13.59876 -13.42192 -13.07186 -12.82301 -12.59668 -12.49920 -12.18557 -12.08636 -12.03871 -11.75025 -11.64806 -11.61798 -11.27112 -10.91067 -10.73299 -10.47686 -9.95378 -9.85937 -9.81064 -9.65959 -8.41716 -6.45778 0.14144 0.39859 1.22066 1.28689 1.41024 1.45740 1.55050 2.22912 2.32132 2.44402 2.75584 2.94454 3.44077 3.74475 3.82922 3.86898 3.96423 4.00650 4.04678 4.11152 4.20981 4.22634 4.43994 4.47003 4.49673 4.56235 4.60582 4.64523 4.74241 4.80100 4.83797 4.88000 5.03408 5.04245 5.05336 5.11121 5.18949 5.29944 5.40943 5.41469 5.42233 5.44282 5.47873 5.52049 5.75158 5.95966 6.14341 6.24843 6.54546 6.95008 7.06892 7.19177 7.65064 8.73590 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013270 B = 0.004009 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2109.449683 B = 6982.777414 C = 8412.496606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.255 3.745 3 H 0.012 0.988 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.034 3.966 7 N -0.930 5.930 8 Si 0.936 3.064 9 H -0.264 1.264 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.704 5.704 13 C 0.522 3.478 14 O -0.583 6.583 15 C 0.131 3.869 16 H 0.113 0.887 17 C -0.119 4.119 18 C -0.110 4.110 19 C -0.130 4.130 20 C 0.105 3.895 21 N -0.593 5.593 22 C 0.536 3.464 23 O -0.535 6.535 24 C -0.127 4.127 25 C -0.100 4.100 26 C -0.117 4.117 27 C -0.102 4.102 28 C -0.115 4.115 29 C -0.100 4.100 30 H 0.033 0.967 31 H 0.042 0.958 32 H 0.051 0.949 33 H 0.271 0.729 34 H 0.400 0.600 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.055 0.945 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.117 0.883 44 H 0.151 0.849 45 H 0.158 0.842 46 H 0.155 0.845 47 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.557 -5.426 -30.419 31.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.150 3.850 3 H 0.030 0.970 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.166 4.166 7 N -0.569 5.569 8 Si 0.764 3.236 9 H -0.190 1.190 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.354 5.354 13 C 0.310 3.690 14 O -0.463 6.463 15 C 0.024 3.976 16 H 0.131 0.869 17 C -0.157 4.157 18 C -0.147 4.147 19 C -0.168 4.168 20 C -0.016 4.016 21 N -0.328 5.328 22 C 0.324 3.676 23 O -0.412 6.412 24 C -0.130 4.130 25 C -0.118 4.118 26 C -0.135 4.135 27 C -0.120 4.120 28 C -0.133 4.133 29 C -0.119 4.119 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.234 0.766 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.129 0.871 40 H 0.073 0.927 41 H 0.111 0.889 42 H 0.114 0.886 43 H 0.135 0.865 44 H 0.169 0.831 45 H 0.176 0.824 46 H 0.173 0.827 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.870 -4.321 -29.677 30.238 hybrid contribution -0.280 0.498 1.263 1.387 sum -4.150 -3.823 -28.413 28.968 Atomic orbital electron populations 1.22214 0.98605 1.00570 0.98718 1.18535 0.90596 0.92605 0.83304 0.97029 1.21279 1.32189 1.13547 0.89858 0.92206 1.25449 0.96668 0.99055 0.95403 1.69957 1.46678 1.41761 0.98542 0.86048 0.79838 0.80741 0.76946 1.19013 1.21154 1.19851 1.45870 1.66402 1.13647 1.09492 1.20512 0.76398 0.87362 0.84754 1.90586 1.51580 1.19028 1.85126 1.21292 0.88762 1.00879 0.86620 0.86944 1.21824 0.95657 0.98967 0.99298 1.21532 0.98386 1.02154 0.92632 1.21949 0.94447 1.00616 0.99825 1.22111 1.00072 0.98847 0.80569 1.48114 1.06075 1.63850 1.14770 1.19284 0.83746 0.77493 0.87085 1.90982 1.82448 1.42091 1.25662 1.19717 0.97250 0.99469 0.96519 1.21193 0.94874 0.96199 0.99573 1.21405 0.97100 1.00671 0.94278 1.21717 0.99058 0.93690 0.97492 1.21427 0.93896 0.98511 0.99419 1.21239 0.99472 0.98049 0.93118 0.94820 0.93882 0.92944 0.91962 0.76598 0.93092 0.90255 0.89637 0.89529 0.87096 0.92660 0.88867 0.88564 0.86484 0.83099 0.82403 0.82694 0.85983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.49 8.96 71.98 0.65 -6.85 16 2 C 0.25 13.79 2.15 44.24 0.10 13.89 16 3 H 0.01 0.72 6.63 -2.39 -0.02 0.70 16 4 C -0.53 -31.23 9.31 25.60 0.24 -30.99 16 5 H 0.06 3.66 7.98 -2.91 -0.02 3.64 16 6 C 0.03 2.05 5.45 84.65 0.46 2.51 16 7 N -0.93 -58.00 13.96 21.45 0.30 -57.70 16 8 Si 0.94 48.91 24.37 68.60 1.67 50.58 16 9 H -0.26 -13.17 6.87 99.48 0.68 -12.48 16 10 H -0.28 -14.23 7.11 99.48 0.71 -13.53 16 11 H -0.27 -14.70 6.53 99.48 0.65 -14.05 16 12 N -0.70 -32.01 5.07 -446.11 -2.26 -34.28 16 13 C 0.52 22.41 4.30 87.65 0.38 22.79 16 14 O -0.58 -30.53 14.23 20.58 0.29 -30.24 16 15 C 0.13 3.84 3.32 44.23 0.15 3.99 16 16 H 0.11 2.67 7.94 -2.39 -0.02 2.65 16 17 C -0.12 -2.92 5.28 30.67 0.16 -2.76 16 18 C -0.11 -1.57 5.89 30.64 0.18 -1.39 16 19 C -0.13 -1.64 6.08 30.69 0.19 -1.45 16 20 C 0.10 1.63 6.30 86.36 0.54 2.17 16 21 N -0.59 -15.63 2.97 -802.55 -2.39 -18.02 16 22 C 0.54 17.84 7.00 86.79 0.61 18.44 16 23 O -0.54 -24.24 11.29 19.75 0.22 -24.02 16 24 C -0.13 -3.24 4.16 -20.09 -0.08 -3.32 16 25 C -0.10 -2.21 9.79 22.53 0.22 -1.99 16 26 C -0.12 -1.81 10.03 22.23 0.22 -1.58 16 27 C -0.10 -1.26 10.04 22.33 0.22 -1.04 16 28 C -0.11 -1.61 10.03 22.23 0.22 -1.39 16 29 C -0.10 -2.04 8.69 22.53 0.20 -1.85 16 30 H 0.03 1.76 3.27 -2.39 -0.01 1.75 16 31 H 0.04 2.31 6.71 -2.39 -0.02 2.29 16 32 H 0.05 2.60 8.14 -2.38 -0.02 2.58 16 33 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 34 H 0.40 15.96 8.40 -92.71 -0.78 15.19 16 35 H 0.05 1.55 7.83 -2.39 -0.02 1.53 16 36 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 37 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 39 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 40 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.10 1.38 5.57 -2.39 -0.01 1.36 16 43 H 0.12 2.72 8.06 -2.91 -0.02 2.70 16 44 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 45 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 46 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 47 H 0.12 2.48 8.06 -2.91 -0.02 2.45 16 Total: -1.00 -85.17 369.11 2.61 -82.55 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: 0.12 Total: 21.92 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 4.65 Total: 9.19 kcal Atomic # 7 Polarization: -105.64 SS G_CDS: -4.35 Total: -109.99 kcal Atomic # 8 Polarization: -54.77 SS G_CDS: 0.52 Total: -54.26 kcal Atomic # 14 Polarization: 48.91 SS G_CDS: 1.67 Total: 50.58 kcal Total: -85.17 2.61 -82.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363363019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.316 kcal (2) G-P(sol) polarization free energy of solvation -85.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds