Wall clock time and date at job start Tue Mar 31 2020 15:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48501 * 109.47152 * 239.99726 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00479 * 12 2 1 14 14 O 1.21279 * 119.99824 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 2 16 16 H 1.09007 * 109.47009 * 344.99735 * 15 13 12 17 17 F 1.39903 * 109.47347 * 104.99362 * 15 13 12 18 18 C 1.53001 * 109.47076 * 224.99841 * 15 13 12 19 19 C 1.53942 * 113.73950 * 276.67009 * 18 15 13 20 20 N 1.47583 * 86.11893 * 222.04726 * 19 18 15 21 21 C 1.34773 * 134.49527 * 204.64083 * 20 19 18 22 22 O 1.21511 * 119.99895 * 180.02562 * 21 20 19 23 23 O 1.34636 * 119.99856 * 0.02562 * 21 20 19 24 24 C 1.45202 * 116.99994 * 179.97438 * 23 21 20 25 25 C 1.53001 * 109.47182 * 59.99730 * 24 23 21 26 26 C 1.53004 * 109.47163 * 179.97438 * 24 23 21 27 27 C 1.53003 * 109.47140 * 299.99797 * 24 23 21 28 28 C 1.47579 * 91.01318 * 24.64540 * 20 19 18 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 33 33 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 34 34 H 1.09002 * 112.94447 * 48.41119 * 18 15 13 35 35 H 1.09000 * 113.77416 * 336.35022 * 19 18 15 36 36 H 1.09002 * 113.76837 * 107.75065 * 19 18 15 37 37 H 1.09007 * 109.46949 * 60.00171 * 25 24 23 38 38 H 1.08997 * 109.47228 * 179.97438 * 25 24 23 39 39 H 1.08993 * 109.47376 * 300.00113 * 25 24 23 40 40 H 1.09003 * 109.47043 * 60.00232 * 26 24 23 41 41 H 1.08997 * 109.47162 * 180.02562 * 26 24 23 42 42 H 1.09000 * 109.46785 * 299.99979 * 26 24 23 43 43 H 1.09006 * 109.46695 * 60.00031 * 27 24 23 44 44 H 1.08997 * 109.47095 * 179.97438 * 27 24 23 45 45 H 1.08999 * 109.47128 * 300.00386 * 27 24 23 46 46 H 1.08997 * 113.77019 * 221.05668 * 28 20 19 47 47 H 1.08999 * 113.77148 * 89.65792 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1874 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1587 2.4115 15 6 2.6488 -0.7286 3.5878 16 1 2.6013 -1.8062 3.4300 17 9 3.9729 -0.3518 3.8366 18 6 1.7768 -0.3499 4.7866 19 6 2.1813 0.9780 5.4522 20 7 1.9607 0.2854 6.7367 21 6 1.6577 0.6877 7.9868 22 8 1.5334 -0.1318 8.8753 23 8 1.4926 1.9975 8.2510 24 6 1.1669 2.3580 9.6194 25 6 2.2863 1.8885 10.5507 26 6 1.0195 3.8772 9.7252 27 6 -0.1478 1.6881 10.0241 28 6 2.2052 -1.0245 6.1024 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 0.7089 1.1612 -3.4844 33 1 2.2490 -1.6317 1.1527 34 1 0.7099 -0.4315 4.5787 35 1 3.2199 1.2587 5.2772 36 1 1.4820 1.7932 5.2669 37 1 3.2230 2.3658 10.2623 38 1 2.0421 2.1595 11.5778 39 1 2.3918 0.8063 10.4754 40 1 0.2221 4.2120 9.0617 41 1 0.7755 4.1479 10.7525 42 1 1.9564 4.3541 9.4370 43 1 -0.0423 0.6058 9.9488 44 1 -0.3920 1.9584 11.0514 45 1 -0.9453 2.0225 9.3606 46 1 1.5250 -1.8080 6.4362 47 1 3.2508 -1.3320 6.1184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368016623.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:26 Heat of formation + Delta-G solvation = -133.123131 kcal Electronic energy + Delta-G solvation = -28894.704703 eV Core-core repulsion = 24607.591054 eV Total energy + Delta-G solvation = -4287.113648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -47.89670 -40.94444 -39.49796 -38.65440 -36.63814 -34.95447 -34.21919 -32.55940 -31.34611 -29.24919 -27.64697 -27.60824 -27.01141 -26.44967 -25.33217 -22.76116 -21.42099 -20.41256 -19.71653 -19.35096 -17.97492 -17.84855 -17.04216 -16.78672 -16.41025 -15.96860 -15.76116 -15.36522 -15.10968 -14.57236 -14.51697 -14.29084 -13.86709 -13.61872 -13.35481 -13.33907 -12.91076 -12.74710 -12.63618 -12.51167 -12.34185 -12.19120 -12.12030 -12.10107 -11.80496 -11.64387 -11.53298 -11.26638 -11.16351 -11.03154 -10.99708 -10.79415 -10.55037 -10.38153 -10.31391 -10.13032 -9.18795 -9.12666 -8.92878 -8.64338 -8.10447 -6.19736 -4.29556 1.81536 2.72285 2.98905 3.19704 3.27700 3.29967 3.49860 3.56159 4.11608 4.29831 4.38182 4.48232 4.52929 4.63664 4.66501 4.67589 4.94403 5.04429 5.12923 5.18658 5.21442 5.22683 5.29253 5.35063 5.44737 5.49621 5.52471 5.61126 5.61511 5.70998 5.76485 5.96624 6.04880 6.08707 6.34356 6.71241 6.83641 7.03003 7.26587 7.40541 7.49883 7.59394 7.79895 8.05029 8.19748 8.44499 8.64345 8.88159 9.37940 10.86218 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.028677 B = 0.002183 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.169724 B =12826.112518 C =13242.793636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.262 3.738 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.696 5.696 13 C 0.481 3.519 14 O -0.532 6.532 15 C 0.088 3.912 16 H 0.105 0.895 17 F -0.189 7.189 18 C -0.139 4.139 19 C 0.125 3.875 20 N -0.634 5.634 21 C 0.676 3.324 22 O -0.573 6.573 23 O -0.359 6.359 24 C 0.134 3.866 25 C -0.183 4.183 26 C -0.141 4.141 27 C -0.183 4.183 28 C 0.139 3.861 29 H 0.028 0.972 30 H 0.092 0.908 31 H 0.015 0.985 32 H 0.265 0.735 33 H 0.391 0.609 34 H 0.125 0.875 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.092 0.908 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.693 -1.113 21.529 21.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.344 5.344 13 C 0.263 3.737 14 O -0.410 6.410 15 C 0.048 3.952 16 H 0.123 0.877 17 F -0.170 7.170 18 C -0.159 4.159 19 C 0.003 3.997 20 N -0.376 5.376 21 C 0.432 3.568 22 O -0.463 6.463 23 O -0.274 6.274 24 C 0.098 3.902 25 C -0.240 4.240 26 C -0.198 4.198 27 C -0.240 4.240 28 C 0.018 3.982 29 H 0.047 0.953 30 H 0.110 0.890 31 H 0.034 0.966 32 H 0.075 0.925 33 H 0.224 0.776 34 H 0.143 0.857 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.110 0.890 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.312 -0.236 21.943 21.947 hybrid contribution 0.507 -0.868 -0.843 1.312 sum 0.818 -1.104 21.100 21.145 Atomic orbital electron populations 1.22084 0.98167 0.99258 1.01082 1.18842 0.91186 0.94099 0.79760 0.93135 1.21225 1.32618 1.13356 0.90195 0.91897 1.24893 0.94737 0.94940 0.99141 1.69900 1.35735 1.22408 1.23930 0.86371 0.78616 0.79530 0.82453 1.19692 1.20849 1.20829 1.46642 1.63734 1.13744 1.10304 1.20523 0.80302 0.88053 0.84871 1.90700 1.50103 1.15452 1.84704 1.21516 0.78373 1.00900 0.94445 0.87687 1.92853 1.35788 1.93348 1.95035 1.23632 1.02038 0.97845 0.92396 1.23202 1.03117 0.96182 0.77184 1.48631 1.71951 1.11357 1.05692 1.17454 0.76310 0.81389 0.81610 1.90881 1.57641 1.53987 1.43820 1.86345 1.83275 1.24370 1.33397 1.22087 0.95394 0.95446 0.77314 1.22511 0.97775 1.04602 0.99097 1.21858 1.03389 0.91750 1.02791 1.22516 0.95803 1.03874 1.01823 1.23243 1.02242 0.85955 0.86723 0.95323 0.88985 0.96580 0.92525 0.77574 0.85692 0.88386 0.88761 0.92179 0.91177 0.89468 0.91354 0.90170 0.91420 0.89444 0.91196 0.92099 0.89015 0.88753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 9.26 37.16 0.34 -3.10 16 2 C 0.26 6.30 2.56 -69.09 -0.18 6.12 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 4 C -0.54 -13.58 8.73 -34.44 -0.30 -13.88 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.63 16 7 N -0.88 -24.11 11.32 55.43 0.63 -23.48 16 8 Si 0.90 20.04 29.54 -169.99 -5.02 15.02 16 9 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.70 -13.14 5.07 -54.94 -0.28 -13.42 16 13 C 0.48 8.49 7.13 -10.99 -0.08 8.41 16 14 O -0.53 -11.41 15.92 5.56 0.09 -11.32 16 15 C 0.09 1.09 3.78 -27.88 -0.11 0.98 16 16 H 0.11 0.92 8.00 -51.92 -0.42 0.51 16 17 F -0.19 -2.59 15.52 2.25 0.03 -2.56 16 18 C -0.14 -1.55 3.56 -89.69 -0.32 -1.87 16 19 C 0.13 1.58 7.83 -2.98 -0.02 1.55 16 20 N -0.63 -8.09 3.61 -184.17 -0.66 -8.75 16 21 C 0.68 9.59 8.22 54.05 0.44 10.04 16 22 O -0.57 -8.87 12.61 -19.28 -0.24 -9.12 16 23 O -0.36 -4.77 9.87 -40.31 -0.40 -5.17 16 24 C 0.13 1.40 1.13 -90.62 -0.10 1.30 16 25 C -0.18 -1.79 8.37 37.16 0.31 -1.48 16 26 C -0.14 -1.11 8.85 37.16 0.33 -0.78 16 27 C -0.18 -1.81 8.37 37.16 0.31 -1.50 16 28 C 0.14 1.40 8.32 -2.97 -0.02 1.37 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.39 6.17 8.43 -40.82 -0.34 5.83 16 34 H 0.13 1.36 8.14 -51.93 -0.42 0.93 16 35 H 0.10 1.26 7.13 -51.93 -0.37 0.89 16 36 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 1.05 5.88 -51.93 -0.31 0.75 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.09 1.06 5.88 -51.93 -0.31 0.76 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.09 0.85 7.91 -51.93 -0.41 0.44 16 LS Contribution 386.82 15.07 5.83 5.83 Total: -1.00 -31.51 386.82 -6.98 -38.50 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -7.47 Total: 5.68 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 0.51 Total: 8.80 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.32 Total: -45.65 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.55 Total: -25.61 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.03 Total: -2.56 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.51 -6.98 -38.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368016623.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.628 kcal (2) G-P(sol) polarization free energy of solvation -31.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds