Wall clock time and date at job start Tue Mar 31 2020 15:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47262 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.46882 * 119.99668 * 8 6 4 11 11 H 1.48501 * 109.47152 * 239.99726 * 8 6 4 12 12 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 13 13 C 1.34777 * 120.00376 * 275.00479 * 12 2 1 14 14 O 1.21279 * 119.99824 * 359.97438 * 13 12 2 15 15 C 1.50699 * 120.00179 * 179.97438 * 13 12 2 16 16 H 1.09007 * 109.47009 * 344.99735 * 15 13 12 17 17 F 1.39903 * 109.47347 * 104.99362 * 15 13 12 18 18 C 1.53001 * 109.47076 * 224.99841 * 15 13 12 19 19 C 1.53942 * 113.73950 * 276.67009 * 18 15 13 20 20 N 1.47583 * 86.11893 * 222.04726 * 19 18 15 21 21 C 1.34773 * 134.49527 * 204.64083 * 20 19 18 22 22 O 1.21511 * 119.99895 * 180.02562 * 21 20 19 23 23 O 1.34636 * 119.99856 * 0.02562 * 21 20 19 24 24 C 1.45202 * 116.99994 * 179.97438 * 23 21 20 25 25 C 1.53001 * 109.47182 * 59.99730 * 24 23 21 26 26 C 1.53004 * 109.47163 * 179.97438 * 24 23 21 27 27 C 1.53003 * 109.47140 * 299.99797 * 24 23 21 28 28 C 1.47579 * 91.01318 * 24.64540 * 20 19 18 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 31 31 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 32 32 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 33 33 H 0.97006 * 119.99921 * 94.99902 * 12 2 1 34 34 H 1.09002 * 112.94447 * 48.41119 * 18 15 13 35 35 H 1.09000 * 113.77416 * 336.35022 * 19 18 15 36 36 H 1.09002 * 113.76837 * 107.75065 * 19 18 15 37 37 H 1.09007 * 109.46949 * 60.00171 * 25 24 23 38 38 H 1.08997 * 109.47228 * 179.97438 * 25 24 23 39 39 H 1.08993 * 109.47376 * 300.00113 * 25 24 23 40 40 H 1.09003 * 109.47043 * 60.00232 * 26 24 23 41 41 H 1.08997 * 109.47162 * 180.02562 * 26 24 23 42 42 H 1.09000 * 109.46785 * 299.99979 * 26 24 23 43 43 H 1.09006 * 109.46695 * 60.00031 * 27 24 23 44 44 H 1.08997 * 109.47095 * 179.97438 * 27 24 23 45 45 H 1.08999 * 109.47128 * 300.00386 * 27 24 23 46 46 H 1.08997 * 113.77019 * 221.05668 * 28 20 19 47 47 H 1.08999 * 113.77148 * 89.65792 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1456 -2.2877 -3.6037 10 1 1.1661 -1.5867 -4.8160 11 1 3.1467 -0.1874 -4.8164 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1587 2.4115 15 6 2.6488 -0.7286 3.5878 16 1 2.6013 -1.8062 3.4300 17 9 3.9729 -0.3518 3.8366 18 6 1.7768 -0.3499 4.7866 19 6 2.1813 0.9780 5.4522 20 7 1.9607 0.2854 6.7367 21 6 1.6577 0.6877 7.9868 22 8 1.5334 -0.1318 8.8753 23 8 1.4926 1.9975 8.2510 24 6 1.1669 2.3580 9.6194 25 6 2.2863 1.8885 10.5507 26 6 1.0195 3.8772 9.7252 27 6 -0.1478 1.6881 10.0241 28 6 2.2052 -1.0245 6.1024 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 0.5139 0.8900 32 1 0.7089 1.1612 -3.4844 33 1 2.2490 -1.6317 1.1527 34 1 0.7099 -0.4315 4.5787 35 1 3.2199 1.2587 5.2772 36 1 1.4820 1.7932 5.2669 37 1 3.2230 2.3658 10.2623 38 1 2.0421 2.1595 11.5778 39 1 2.3918 0.8063 10.4754 40 1 0.2221 4.2120 9.0617 41 1 0.7755 4.1479 10.7525 42 1 1.9564 4.3541 9.4370 43 1 -0.0423 0.6058 9.9488 44 1 -0.3920 1.9584 11.0514 45 1 -0.9453 2.0225 9.3606 46 1 1.5250 -1.8080 6.4362 47 1 3.2508 -1.3320 6.1184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368016623.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:25 Heat of formation + Delta-G solvation = -153.769452 kcal Electronic energy + Delta-G solvation = -28895.599995 eV Core-core repulsion = 24607.591054 eV Total energy + Delta-G solvation = -4288.008940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.179 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.97294 -41.92088 -40.67289 -39.94239 -37.64186 -36.72917 -35.08591 -34.36857 -32.50243 -30.90081 -28.38090 -28.32873 -28.18535 -27.37675 -27.30559 -23.97182 -22.79656 -21.58000 -21.16509 -20.28627 -19.34297 -18.94393 -18.08174 -17.85935 -17.69211 -17.41873 -16.95121 -16.75145 -16.21461 -16.04446 -15.54011 -15.35738 -15.07232 -14.95902 -14.50822 -14.38394 -14.24864 -13.92550 -13.80424 -13.51869 -13.35924 -13.31201 -13.05951 -13.00003 -12.92336 -12.89370 -12.85976 -12.75437 -12.50360 -12.39082 -12.26347 -12.13547 -12.11898 -11.90690 -11.42344 -11.11615 -11.08079 -10.68135 -10.54861 -9.91791 -9.80597 -8.16869 -6.33884 0.91215 1.45620 1.47458 1.56316 1.59065 1.68461 2.19542 2.45997 2.61763 3.13029 3.15300 3.37246 3.65087 3.73007 3.74566 3.77996 3.87330 3.92528 4.08994 4.20443 4.41564 4.51209 4.52233 4.59238 4.59922 4.63569 4.74156 4.77891 4.80139 4.85067 4.88141 4.94728 5.05844 5.09545 5.10889 5.25873 5.30161 5.43668 5.44416 5.58827 5.68988 5.89473 6.11162 6.49201 6.73737 6.85127 7.17469 7.30948 7.46221 8.89300 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.028677 B = 0.002183 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.169724 B =12826.112518 C =13242.793636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.268 3.732 3 H 0.000 1.000 4 C -0.545 4.545 5 H 0.076 0.924 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.970 3.030 9 H -0.258 1.258 10 H -0.280 1.280 11 H -0.287 1.287 12 N -0.693 5.693 13 C 0.476 3.524 14 O -0.576 6.576 15 C 0.104 3.896 16 H 0.156 0.844 17 F -0.194 7.194 18 C -0.131 4.131 19 C 0.120 3.880 20 N -0.639 5.639 21 C 0.668 3.332 22 O -0.590 6.590 23 O -0.373 6.373 24 C 0.120 3.880 25 C -0.177 4.177 26 C -0.136 4.136 27 C -0.178 4.178 28 C 0.147 3.853 29 H 0.044 0.956 30 H 0.064 0.936 31 H 0.016 0.984 32 H 0.265 0.735 33 H 0.410 0.590 34 H 0.130 0.870 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.094 0.906 45 H 0.057 0.943 46 H 0.110 0.890 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.245 -2.938 22.547 22.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.017 0.983 4 C -0.583 4.583 5 H 0.094 0.906 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.795 3.205 9 H -0.182 1.182 10 H -0.206 1.206 11 H -0.213 1.213 12 N -0.342 5.342 13 C 0.260 3.740 14 O -0.455 6.455 15 C 0.064 3.936 16 H 0.173 0.827 17 F -0.175 7.175 18 C -0.151 4.151 19 C -0.002 4.002 20 N -0.381 5.381 21 C 0.425 3.575 22 O -0.482 6.482 23 O -0.288 6.288 24 C 0.084 3.916 25 C -0.234 4.234 26 C -0.193 4.193 27 C -0.235 4.235 28 C 0.027 3.973 29 H 0.063 0.937 30 H 0.083 0.917 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.246 0.754 34 H 0.148 0.852 35 H 0.112 0.888 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.125 0.875 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.113 0.887 45 H 0.077 0.923 46 H 0.128 0.872 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 0.883 -2.103 22.983 23.096 hybrid contribution 0.333 -0.214 -1.112 1.180 sum 1.216 -2.316 21.871 22.027 Atomic orbital electron populations 1.21893 0.97902 0.99750 0.99752 1.18395 0.91361 0.91969 0.81765 0.98250 1.21584 1.32439 1.13573 0.90696 0.90590 1.25781 0.94935 0.95594 1.02343 1.70051 1.37033 1.23958 1.24519 0.85318 0.78042 0.78556 0.78536 1.18208 1.20576 1.21275 1.46358 1.63901 1.14546 1.09432 1.21472 0.79002 0.87663 0.85857 1.90687 1.51560 1.17722 1.85565 1.21520 0.77787 1.02694 0.91611 0.82664 1.92854 1.36192 1.93629 1.94819 1.23581 1.02120 0.96966 0.92395 1.23186 1.02558 0.96774 0.77730 1.48814 1.71498 1.12551 1.05261 1.17661 0.76368 0.81581 0.81869 1.90868 1.58528 1.54450 1.44365 1.86354 1.83203 1.24003 1.35245 1.22499 0.95769 0.97089 0.76272 1.22453 0.97650 1.02851 1.00446 1.21892 1.03308 0.89682 1.04448 1.22461 0.95528 1.02154 1.03328 1.23402 1.03664 0.85272 0.84983 0.93712 0.91727 0.96474 0.92612 0.75407 0.85190 0.88788 0.90218 0.92235 0.88660 0.91905 0.91633 0.87463 0.91502 0.91858 0.88676 0.92346 0.87198 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.35 9.26 71.98 0.67 -5.69 16 2 C 0.27 13.04 2.56 44.24 0.11 13.15 16 3 H 0.00 -0.02 7.58 -2.39 -0.02 -0.04 16 4 C -0.54 -27.37 8.73 25.60 0.22 -27.15 16 5 H 0.08 3.53 7.74 -2.91 -0.02 3.51 16 6 C 0.01 0.70 5.30 84.66 0.45 1.15 16 7 N -0.92 -51.18 11.32 21.45 0.24 -50.93 16 8 Si 0.97 40.69 29.54 68.60 2.03 42.72 16 9 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 10 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 11 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 12 N -0.69 -25.40 5.07 -446.11 -2.26 -27.66 16 13 C 0.48 16.39 7.13 87.66 0.63 17.02 16 14 O -0.58 -25.17 15.92 -3.03 -0.05 -25.22 16 15 C 0.10 2.29 3.78 29.85 0.11 2.40 16 16 H 0.16 1.98 8.00 -2.38 -0.02 1.96 16 17 F -0.19 -4.88 15.52 44.97 0.70 -4.18 16 18 C -0.13 -2.67 3.56 -10.13 -0.04 -2.71 16 19 C 0.12 2.99 7.83 86.48 0.68 3.67 16 20 N -0.64 -15.82 3.61 -967.01 -3.49 -19.31 16 21 C 0.67 18.92 8.22 129.79 1.07 19.99 16 22 O -0.59 -18.25 12.61 19.80 0.25 -18.00 16 23 O -0.37 -9.98 9.87 -55.45 -0.55 -10.52 16 24 C 0.12 2.41 1.13 -10.79 -0.01 2.40 16 25 C -0.18 -3.31 8.37 71.98 0.60 -2.70 16 26 C -0.14 -1.95 8.85 71.98 0.64 -1.31 16 27 C -0.18 -3.38 8.37 71.98 0.60 -2.78 16 28 C 0.15 2.58 8.32 86.48 0.72 3.30 16 29 H 0.04 1.91 8.14 -2.39 -0.02 1.90 16 30 H 0.06 3.43 6.07 -2.39 -0.01 3.41 16 31 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 32 H 0.26 14.00 8.31 -92.71 -0.77 13.23 16 33 H 0.41 11.88 8.43 -92.70 -0.78 11.10 16 34 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.09 2.41 7.13 -2.39 -0.02 2.39 16 36 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 1.51 5.88 -2.39 -0.01 1.49 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.06 1.54 5.88 -2.38 -0.01 1.52 16 44 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 47 H 0.11 1.63 7.91 -2.39 -0.02 1.61 16 Total: -1.00 -71.01 386.82 3.52 -67.49 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.20 Total: 24.87 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 6.45 Total: 20.74 kcal Atomic # 7 Polarization: -92.40 SS G_CDS: -5.51 Total: -97.90 kcal Atomic # 8 Polarization: -53.39 SS G_CDS: -0.35 Total: -53.74 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.70 Total: -4.18 kcal Atomic # 14 Polarization: 40.69 SS G_CDS: 2.03 Total: 42.72 kcal Total: -71.01 3.52 -67.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368016623.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.280 kcal (2) G-P(sol) polarization free energy of solvation -71.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds