Wall clock time and date at job start Tue Mar 31 2020 15:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46945 * 2 1 4 4 C 1.50693 * 109.47108 * 119.99954 * 2 1 3 5 5 H 1.08004 * 120.00607 * 120.00053 * 4 2 1 6 6 C 1.37880 * 120.00122 * 299.99657 * 4 2 1 7 7 N 1.31520 * 119.99868 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00355 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47078 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47243 * 119.99980 * 8 6 4 11 11 H 1.48500 * 109.47731 * 240.00091 * 8 6 4 12 12 N 1.46505 * 109.46886 * 239.99822 * 2 1 3 13 13 C 1.34768 * 119.99925 * 85.00243 * 12 2 1 14 14 O 1.21282 * 120.00223 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99931 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.47060 * 344.99856 * 15 13 12 17 17 F 1.39904 * 109.47245 * 105.00039 * 15 13 12 18 18 C 1.52997 * 109.47212 * 224.99800 * 15 13 12 19 19 C 1.53948 * 113.74309 * 276.67459 * 18 15 13 20 20 N 1.47578 * 86.11700 * 222.04479 * 19 18 15 21 21 C 1.34781 * 134.49101 * 204.63711 * 20 19 18 22 22 O 1.21511 * 119.99701 * 180.02562 * 21 20 19 23 23 O 1.34633 * 120.00083 * 0.02562 * 21 20 19 24 24 C 1.45198 * 116.99850 * 179.97438 * 23 21 20 25 25 C 1.53000 * 109.47249 * 59.99949 * 24 23 21 26 26 C 1.53000 * 109.46959 * 179.97438 * 24 23 21 27 27 C 1.52998 * 109.47052 * 299.99648 * 24 23 21 28 28 C 1.47582 * 91.01395 * 24.63772 * 20 19 18 29 29 H 1.08998 * 109.47606 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47036 * 300.00244 * 1 2 3 31 31 H 1.08996 * 109.47369 * 60.00121 * 1 2 3 32 32 H 0.97000 * 119.99516 * 179.97438 * 7 6 4 33 33 H 0.96996 * 119.99473 * 265.00155 * 12 2 1 34 34 H 1.09007 * 112.94504 * 48.40315 * 18 15 13 35 35 H 1.08997 * 113.76595 * 336.34823 * 19 18 15 36 36 H 1.09004 * 113.77048 * 107.74437 * 19 18 15 37 37 H 1.09000 * 109.46976 * 60.00162 * 25 24 23 38 38 H 1.09003 * 109.47199 * 179.97438 * 25 24 23 39 39 H 1.09001 * 109.46972 * 299.99742 * 25 24 23 40 40 H 1.09002 * 109.47223 * 60.00468 * 26 24 23 41 41 H 1.09004 * 109.47264 * 179.97438 * 26 24 23 42 42 H 1.09000 * 109.47558 * 300.00018 * 26 24 23 43 43 H 1.09001 * 109.47197 * 60.00241 * 27 24 23 44 44 H 1.09003 * 109.46868 * 180.02562 * 27 24 23 45 45 H 1.08994 * 109.47308 * 299.99902 * 27 24 23 46 46 H 1.09003 * 113.76788 * 221.05462 * 28 20 19 47 47 H 1.09005 * 113.76678 * 89.66193 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.1464 -2.2870 3.6038 10 1 3.1466 -0.1872 4.8165 11 1 1.1661 -1.5865 4.8162 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3571 14 8 1.8582 1.1583 -2.4117 15 6 2.6487 -0.7290 -3.5877 16 1 3.1009 -1.6782 -3.3002 17 9 1.5792 -0.9665 -4.4578 18 6 3.6931 0.1417 -4.2892 19 6 3.0871 1.2101 -5.2172 20 7 4.1579 0.8490 -6.1664 21 6 4.7800 1.4888 -7.1765 22 8 5.6532 0.9253 -7.8062 23 8 4.4339 2.7521 -7.4878 24 6 5.1464 3.3789 -8.5867 25 6 4.9295 2.5664 -9.8648 26 6 4.6194 4.8007 -8.7912 27 6 6.6408 3.4302 -8.2624 28 6 4.2738 -0.4939 -5.5654 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.7082 1.1610 3.4844 33 1 2.2489 -1.6318 -1.1525 34 1 4.4508 0.5286 -3.6078 35 1 2.0854 0.9671 -5.5716 36 1 3.1678 2.2257 -4.8295 37 1 3.8648 2.5300 -10.0959 38 1 5.4640 3.0373 -10.6899 39 1 5.3046 1.5534 -9.7194 40 1 4.7737 5.3799 -7.8808 41 1 5.1546 5.2715 -9.6159 42 1 3.5549 4.7639 -9.0224 43 1 7.0160 2.4171 -8.1170 44 1 7.1756 3.9012 -9.0872 45 1 6.7953 4.0091 -7.3519 46 1 5.3019 -0.8389 -5.4558 47 1 3.6206 -1.2375 -6.0222 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368016625.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:34 Heat of formation + Delta-G solvation = -133.232102 kcal Electronic energy + Delta-G solvation = -28891.089353 eV Core-core repulsion = 24603.970980 eV Total energy + Delta-G solvation = -4287.118374 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.179 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -47.90682 -40.93793 -39.49158 -38.65177 -36.63195 -34.95256 -34.21369 -32.56141 -31.34469 -29.23714 -27.64186 -27.60279 -26.99908 -26.44236 -25.33120 -22.76887 -21.42782 -20.36794 -19.72624 -19.34260 -17.96701 -17.84784 -17.04627 -16.78121 -16.47539 -15.95938 -15.72500 -15.37811 -15.05031 -14.55921 -14.53581 -14.26629 -13.87232 -13.60712 -13.41306 -13.33996 -12.92800 -12.74150 -12.62066 -12.51761 -12.30680 -12.18017 -12.11480 -12.09083 -11.77486 -11.64590 -11.52994 -11.28653 -11.14083 -11.03928 -10.98254 -10.79834 -10.54450 -10.37465 -10.31323 -10.12382 -9.18613 -9.12529 -8.92198 -8.64604 -8.10264 -6.20132 -4.30117 1.82199 2.72952 2.99076 3.19092 3.26992 3.29111 3.50330 3.56615 4.12129 4.29278 4.38713 4.48786 4.53467 4.64399 4.66997 4.68174 4.95467 5.04977 5.12253 5.19233 5.21787 5.23097 5.29745 5.35851 5.45197 5.50061 5.52987 5.61778 5.62087 5.71603 5.76988 5.97704 6.05431 6.09358 6.34989 6.73326 6.86867 7.04787 7.27162 7.41322 7.50620 7.59105 7.80084 8.05328 8.20444 8.44509 8.63861 8.88036 9.37391 10.85778 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023046 B = 0.002221 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.645849 B =12603.799118 C =12800.456872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.263 3.737 3 H 0.051 0.949 4 C -0.536 4.536 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.882 5.882 8 Si 0.903 3.097 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.696 5.696 13 C 0.481 3.519 14 O -0.532 6.532 15 C 0.088 3.912 16 H 0.106 0.894 17 F -0.190 7.190 18 C -0.139 4.139 19 C 0.125 3.875 20 N -0.634 5.634 21 C 0.676 3.324 22 O -0.573 6.573 23 O -0.359 6.359 24 C 0.134 3.866 25 C -0.183 4.183 26 C -0.141 4.141 27 C -0.183 4.183 28 C 0.140 3.860 29 H 0.028 0.972 30 H 0.091 0.909 31 H 0.016 0.984 32 H 0.265 0.735 33 H 0.391 0.609 34 H 0.126 0.874 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.087 0.913 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.067 0.933 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.092 0.908 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.349 0.597 -19.797 21.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.161 3.839 3 H 0.069 0.931 4 C -0.574 4.574 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.519 5.519 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.344 5.344 13 C 0.263 3.737 14 O -0.410 6.410 15 C 0.047 3.953 16 H 0.123 0.877 17 F -0.171 7.171 18 C -0.159 4.159 19 C 0.003 3.997 20 N -0.376 5.376 21 C 0.432 3.568 22 O -0.463 6.463 23 O -0.274 6.274 24 C 0.098 3.902 25 C -0.240 4.240 26 C -0.198 4.198 27 C -0.240 4.240 28 C 0.018 3.982 29 H 0.047 0.953 30 H 0.110 0.890 31 H 0.035 0.965 32 H 0.075 0.925 33 H 0.224 0.776 34 H 0.144 0.856 35 H 0.116 0.884 36 H 0.112 0.888 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.106 0.894 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.110 0.890 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 7.405 1.587 -20.098 21.477 hybrid contribution 0.292 -0.925 0.792 1.252 sum 7.697 0.661 -19.306 20.794 Atomic orbital electron populations 1.22084 0.98185 0.99323 1.01082 1.18842 0.91241 0.94045 0.79723 0.93107 1.21223 1.32665 1.13338 0.90196 0.91902 1.24898 0.94743 0.94937 0.99142 1.69910 1.35679 1.22409 1.23927 0.86373 0.78624 0.79507 0.82469 1.19703 1.20849 1.20834 1.46642 1.63724 1.13634 1.10429 1.20520 0.80279 0.88040 0.84905 1.90701 1.50035 1.15582 1.84652 1.21514 0.85175 1.00457 0.88107 0.87651 1.92849 1.58143 1.95571 1.70529 1.23633 0.98549 0.97244 0.96489 1.23201 0.91608 1.00529 0.84348 1.48630 1.39740 1.16647 1.32608 1.17455 0.80292 0.80306 0.78710 1.90880 1.34180 1.68307 1.52949 1.86343 1.62150 1.26738 1.52159 1.22083 0.91722 0.92415 0.84016 1.22511 1.02433 1.02866 0.96168 1.21859 1.02233 0.92864 1.02835 1.22516 0.94403 1.04903 1.02203 1.23242 1.02577 0.84329 0.88011 0.95323 0.89002 0.96517 0.92522 0.77572 0.85615 0.88429 0.88754 0.92189 0.91180 0.89465 0.91356 0.90174 0.91422 0.89433 0.91201 0.92094 0.88996 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.26 37.16 0.34 -3.20 16 2 C 0.26 6.31 2.56 -69.08 -0.18 6.13 16 3 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 4 C -0.54 -13.49 8.73 -34.44 -0.30 -13.79 16 5 H 0.06 1.50 7.74 -52.48 -0.41 1.09 16 6 C 0.07 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.88 -24.06 11.32 55.43 0.63 -23.43 16 8 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 9 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 12 N -0.70 -13.14 5.07 -54.93 -0.28 -13.41 16 13 C 0.48 8.49 7.13 -10.99 -0.08 8.41 16 14 O -0.53 -11.41 15.92 5.56 0.09 -11.32 16 15 C 0.09 1.08 3.78 -27.88 -0.11 0.98 16 16 H 0.11 0.93 7.99 -51.93 -0.42 0.52 16 17 F -0.19 -2.56 15.51 2.25 0.03 -2.53 16 18 C -0.14 -1.57 3.56 -89.70 -0.32 -1.89 16 19 C 0.13 1.58 7.83 -2.97 -0.02 1.56 16 20 N -0.63 -8.14 3.61 -184.18 -0.66 -8.80 16 21 C 0.68 9.65 8.22 54.06 0.44 10.09 16 22 O -0.57 -8.92 12.61 -19.28 -0.24 -9.16 16 23 O -0.36 -4.80 9.87 -40.30 -0.40 -5.19 16 24 C 0.13 1.41 1.13 -90.62 -0.10 1.31 16 25 C -0.18 -1.80 8.37 37.16 0.31 -1.48 16 26 C -0.14 -1.12 8.85 37.16 0.33 -0.79 16 27 C -0.18 -1.83 8.37 37.16 0.31 -1.52 16 28 C 0.14 1.41 8.32 -2.98 -0.02 1.39 16 29 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.09 2.40 6.07 -51.93 -0.32 2.09 16 31 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.39 6.17 8.43 -40.82 -0.34 5.83 16 34 H 0.13 1.40 8.14 -51.93 -0.42 0.98 16 35 H 0.10 1.25 7.13 -51.93 -0.37 0.88 16 36 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.09 1.05 5.88 -51.93 -0.31 0.75 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 1.07 5.88 -51.93 -0.31 0.77 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 47 H 0.09 0.85 7.91 -51.93 -0.41 0.44 16 LS Contribution 386.81 15.07 5.83 5.83 Total: -1.00 -31.40 386.81 -6.98 -38.38 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -7.47 Total: 5.92 kcal Atomic # 6 Polarization: 8.30 SS G_CDS: 0.51 Total: 8.81 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.32 Total: -45.65 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.55 Total: -25.68 kcal Atomic # 9 Polarization: -2.56 SS G_CDS: 0.03 Total: -2.53 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.40 -6.98 -38.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368016625.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.849 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds