Wall clock time and date at job start Tue Mar 31 2020 15:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46945 * 2 1 4 4 C 1.50693 * 109.47108 * 119.99954 * 2 1 3 5 5 H 1.08004 * 120.00607 * 120.00053 * 4 2 1 6 6 C 1.37880 * 120.00122 * 299.99657 * 4 2 1 7 7 N 1.31520 * 119.99868 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00355 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47078 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47243 * 119.99980 * 8 6 4 11 11 H 1.48500 * 109.47731 * 240.00091 * 8 6 4 12 12 N 1.46505 * 109.46886 * 239.99822 * 2 1 3 13 13 C 1.34768 * 119.99925 * 85.00243 * 12 2 1 14 14 O 1.21282 * 120.00223 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99931 * 180.02562 * 13 12 2 16 16 H 1.09002 * 109.47060 * 344.99856 * 15 13 12 17 17 F 1.39904 * 109.47245 * 105.00039 * 15 13 12 18 18 C 1.52997 * 109.47212 * 224.99800 * 15 13 12 19 19 C 1.53948 * 113.74309 * 276.67459 * 18 15 13 20 20 N 1.47578 * 86.11700 * 222.04479 * 19 18 15 21 21 C 1.34781 * 134.49101 * 204.63711 * 20 19 18 22 22 O 1.21511 * 119.99701 * 180.02562 * 21 20 19 23 23 O 1.34633 * 120.00083 * 0.02562 * 21 20 19 24 24 C 1.45198 * 116.99850 * 179.97438 * 23 21 20 25 25 C 1.53000 * 109.47249 * 59.99949 * 24 23 21 26 26 C 1.53000 * 109.46959 * 179.97438 * 24 23 21 27 27 C 1.52998 * 109.47052 * 299.99648 * 24 23 21 28 28 C 1.47582 * 91.01395 * 24.63772 * 20 19 18 29 29 H 1.08998 * 109.47606 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47036 * 300.00244 * 1 2 3 31 31 H 1.08996 * 109.47369 * 60.00121 * 1 2 3 32 32 H 0.97000 * 119.99516 * 179.97438 * 7 6 4 33 33 H 0.96996 * 119.99473 * 265.00155 * 12 2 1 34 34 H 1.09007 * 112.94504 * 48.40315 * 18 15 13 35 35 H 1.08997 * 113.76595 * 336.34823 * 19 18 15 36 36 H 1.09004 * 113.77048 * 107.74437 * 19 18 15 37 37 H 1.09000 * 109.46976 * 60.00162 * 25 24 23 38 38 H 1.09003 * 109.47199 * 179.97438 * 25 24 23 39 39 H 1.09001 * 109.46972 * 299.99742 * 25 24 23 40 40 H 1.09002 * 109.47223 * 60.00468 * 26 24 23 41 41 H 1.09004 * 109.47264 * 179.97438 * 26 24 23 42 42 H 1.09000 * 109.47558 * 300.00018 * 26 24 23 43 43 H 1.09001 * 109.47197 * 60.00241 * 27 24 23 44 44 H 1.09003 * 109.46868 * 180.02562 * 27 24 23 45 45 H 1.08994 * 109.47308 * 299.99902 * 27 24 23 46 46 H 1.09003 * 113.76788 * 221.05462 * 28 20 19 47 47 H 1.09005 * 113.76678 * 89.66193 * 28 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8298 2.6034 8 14 2.3213 -1.1202 4.0080 9 1 3.1464 -2.2870 3.6038 10 1 3.1466 -0.1872 4.8165 11 1 1.1661 -1.5865 4.8162 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0184 -2.3571 14 8 1.8582 1.1583 -2.4117 15 6 2.6487 -0.7290 -3.5877 16 1 3.1009 -1.6782 -3.3002 17 9 1.5792 -0.9665 -4.4578 18 6 3.6931 0.1417 -4.2892 19 6 3.0871 1.2101 -5.2172 20 7 4.1579 0.8490 -6.1664 21 6 4.7800 1.4888 -7.1765 22 8 5.6532 0.9253 -7.8062 23 8 4.4339 2.7521 -7.4878 24 6 5.1464 3.3789 -8.5867 25 6 4.9295 2.5664 -9.8648 26 6 4.6194 4.8007 -8.7912 27 6 6.6408 3.4302 -8.2624 28 6 4.2738 -0.4939 -5.5654 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 0.7082 1.1610 3.4844 33 1 2.2489 -1.6318 -1.1525 34 1 4.4508 0.5286 -3.6078 35 1 2.0854 0.9671 -5.5716 36 1 3.1678 2.2257 -4.8295 37 1 3.8648 2.5300 -10.0959 38 1 5.4640 3.0373 -10.6899 39 1 5.3046 1.5534 -9.7194 40 1 4.7737 5.3799 -7.8808 41 1 5.1546 5.2715 -9.6159 42 1 3.5549 4.7639 -9.0224 43 1 7.0160 2.4171 -8.1170 44 1 7.1756 3.9012 -9.0872 45 1 6.7953 4.0091 -7.3519 46 1 5.3019 -0.8389 -5.4558 47 1 3.6206 -1.2375 -6.0222 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368016625.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:33 Heat of formation + Delta-G solvation = -153.729651 kcal Electronic energy + Delta-G solvation = -28891.978194 eV Core-core repulsion = 24603.970980 eV Total energy + Delta-G solvation = -4288.007214 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.97304 -41.92147 -40.67142 -39.94431 -37.64279 -36.72994 -35.08698 -34.36545 -32.50880 -30.89704 -28.38226 -28.32907 -28.18250 -27.37793 -27.31018 -23.99620 -22.79259 -21.54362 -21.18514 -20.28626 -19.34226 -18.94272 -18.10825 -17.87610 -17.68559 -17.46442 -16.85814 -16.75775 -16.23106 -16.00288 -15.50490 -15.28189 -15.24679 -14.95585 -14.49749 -14.41168 -14.25145 -13.96805 -13.67348 -13.56714 -13.36087 -13.32091 -13.06249 -12.99716 -12.92306 -12.89440 -12.86176 -12.75001 -12.50814 -12.39599 -12.27002 -12.14140 -12.11664 -11.90649 -11.42424 -11.11561 -11.08298 -10.68034 -10.54868 -9.91812 -9.80746 -8.16465 -6.33477 0.91152 1.46230 1.48111 1.56554 1.59383 1.68437 2.19157 2.46510 2.61768 3.13493 3.15459 3.37095 3.64883 3.72821 3.74185 3.77905 3.87312 3.92452 4.09003 4.20326 4.41411 4.51249 4.52270 4.59174 4.59851 4.63652 4.74093 4.76327 4.80067 4.84947 4.88083 4.93406 5.05735 5.09433 5.10523 5.25807 5.30097 5.42642 5.44335 5.59076 5.68220 5.88458 6.10224 6.49195 6.74144 6.85127 7.17423 7.31193 7.46383 8.89862 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.023046 B = 0.002221 C = 0.002187 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.645849 B =12603.799118 C =12800.456872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.269 3.731 3 H 0.004 0.996 4 C -0.543 4.543 5 H 0.078 0.922 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.971 3.029 9 H -0.257 1.257 10 H -0.286 1.286 11 H -0.282 1.282 12 N -0.693 5.693 13 C 0.476 3.524 14 O -0.576 6.576 15 C 0.104 3.896 16 H 0.156 0.844 17 F -0.193 7.193 18 C -0.132 4.132 19 C 0.120 3.880 20 N -0.639 5.639 21 C 0.668 3.332 22 O -0.590 6.590 23 O -0.373 6.373 24 C 0.120 3.880 25 C -0.177 4.177 26 C -0.136 4.136 27 C -0.178 4.178 28 C 0.147 3.853 29 H 0.041 0.959 30 H 0.066 0.934 31 H 0.012 0.988 32 H 0.264 0.736 33 H 0.410 0.590 34 H 0.128 0.872 35 H 0.095 0.905 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.107 0.893 42 H 0.066 0.934 43 H 0.062 0.938 44 H 0.095 0.905 45 H 0.057 0.943 46 H 0.109 0.891 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.535 -1.101 -20.676 22.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.166 3.834 3 H 0.022 0.978 4 C -0.581 4.581 5 H 0.096 0.904 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.796 3.204 9 H -0.181 1.181 10 H -0.212 1.212 11 H -0.208 1.208 12 N -0.342 5.342 13 C 0.260 3.740 14 O -0.455 6.455 15 C 0.065 3.935 16 H 0.173 0.827 17 F -0.174 7.174 18 C -0.152 4.152 19 C -0.002 4.002 20 N -0.381 5.381 21 C 0.425 3.575 22 O -0.482 6.482 23 O -0.288 6.288 24 C 0.084 3.916 25 C -0.234 4.234 26 C -0.193 4.193 27 C -0.235 4.235 28 C 0.027 3.973 29 H 0.060 0.940 30 H 0.084 0.916 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.246 0.754 34 H 0.146 0.854 35 H 0.114 0.886 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.125 0.875 42 H 0.085 0.915 43 H 0.081 0.919 44 H 0.113 0.887 45 H 0.076 0.924 46 H 0.127 0.873 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 8.602 -0.156 -21.003 22.697 hybrid contribution -0.098 -0.315 1.013 1.065 sum 8.504 -0.470 -19.990 21.729 Atomic orbital electron populations 1.21918 0.98413 0.99566 0.99611 1.18393 0.91036 0.92191 0.81818 0.97822 1.21581 1.32419 1.13566 0.90556 0.90370 1.25794 0.94942 0.95584 1.02381 1.70061 1.37056 1.24023 1.24509 0.85309 0.78001 0.78584 0.78506 1.18070 1.21225 1.20780 1.46355 1.63876 1.14434 1.09574 1.21470 0.78926 0.87669 0.85923 1.90688 1.51500 1.17859 1.85494 1.21494 0.84750 1.02049 0.85249 0.82697 1.92854 1.58644 1.95552 1.70320 1.23579 0.98159 0.96709 0.96750 1.23185 0.91697 1.00358 0.84950 1.48814 1.39410 1.17750 1.32161 1.17662 0.80316 0.80599 0.78909 1.90868 1.34948 1.68765 1.53623 1.86352 1.62762 1.26464 1.53222 1.22496 0.91986 0.93610 0.83531 1.22452 1.02630 1.01590 0.96709 1.21893 1.02523 0.91183 1.03732 1.22462 0.94368 1.03532 1.03134 1.23400 1.03921 0.83490 0.86476 0.94016 0.91557 0.96881 0.92633 0.75397 0.85399 0.88650 0.90287 0.92198 0.88663 0.91906 0.91671 0.87462 0.91458 0.91860 0.88667 0.92393 0.87286 0.87025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.63 9.26 71.98 0.67 -5.96 16 2 C 0.27 13.05 2.56 44.24 0.11 13.17 16 3 H 0.00 0.22 7.58 -2.39 -0.02 0.21 16 4 C -0.54 -27.00 8.73 25.60 0.22 -26.78 16 5 H 0.08 3.56 7.74 -2.91 -0.02 3.54 16 6 C 0.01 0.67 5.30 84.65 0.45 1.12 16 7 N -0.92 -51.13 11.32 21.45 0.24 -50.89 16 8 Si 0.97 40.39 29.54 68.60 2.03 42.41 16 9 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 10 H -0.29 -11.98 7.11 99.48 0.71 -11.28 16 11 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 12 N -0.69 -25.37 5.07 -446.10 -2.26 -27.63 16 13 C 0.48 16.39 7.13 87.66 0.63 17.01 16 14 O -0.58 -25.17 15.92 -3.04 -0.05 -25.22 16 15 C 0.10 2.30 3.78 29.85 0.11 2.41 16 16 H 0.16 1.99 7.99 -2.39 -0.02 1.97 16 17 F -0.19 -4.73 15.51 44.97 0.70 -4.03 16 18 C -0.13 -2.75 3.56 -10.14 -0.04 -2.79 16 19 C 0.12 3.02 7.83 86.48 0.68 3.70 16 20 N -0.64 -15.95 3.61 -967.03 -3.49 -19.44 16 21 C 0.67 19.05 8.22 129.79 1.07 20.11 16 22 O -0.59 -18.36 12.61 19.81 0.25 -18.11 16 23 O -0.37 -10.04 9.87 -55.42 -0.55 -10.58 16 24 C 0.12 2.43 1.13 -10.79 -0.01 2.42 16 25 C -0.18 -3.31 8.37 71.98 0.60 -2.71 16 26 C -0.14 -1.96 8.85 71.98 0.64 -1.32 16 27 C -0.18 -3.44 8.37 71.98 0.60 -2.83 16 28 C 0.15 2.62 8.32 86.48 0.72 3.34 16 29 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.07 3.57 6.07 -2.38 -0.01 3.56 16 31 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 33 H 0.41 11.86 8.43 -92.71 -0.78 11.08 16 34 H 0.13 2.66 8.14 -2.38 -0.02 2.64 16 35 H 0.10 2.42 7.13 -2.39 -0.02 2.41 16 36 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 37 H 0.06 1.09 8.14 -2.39 -0.02 1.08 16 38 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 1.51 5.88 -2.39 -0.01 1.50 16 40 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 1.55 5.88 -2.39 -0.01 1.54 16 44 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 47 H 0.11 1.64 7.91 -2.38 -0.02 1.63 16 Total: -1.00 -70.59 386.81 3.52 -67.07 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: 0.20 Total: 25.54 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: 6.45 Total: 20.88 kcal Atomic # 7 Polarization: -92.46 SS G_CDS: -5.51 Total: -97.97 kcal Atomic # 8 Polarization: -53.57 SS G_CDS: -0.35 Total: -53.91 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 0.70 Total: -4.03 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.41 kcal Total: -70.59 3.52 -67.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368016625.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.658 kcal (2) G-P(sol) polarization free energy of solvation -70.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds