Wall clock time and date at job start Tue Mar 31 2020 17:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.47324 * 2 1 4 4 C 1.37096 * 119.99634 * 275.99452 * 3 2 1 5 5 H 1.08009 * 119.99536 * 145.68069 * 4 3 2 6 6 C 1.38946 * 120.00286 * 325.68401 * 4 3 2 7 7 N 1.31408 * 119.99816 * 336.56790 * 6 4 3 8 8 Si 1.86796 * 120.00045 * 156.57362 * 6 4 3 9 9 H 1.48503 * 109.47289 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47259 * 119.99648 * 8 6 4 11 11 H 1.48506 * 109.47131 * 239.99639 * 8 6 4 12 12 C 1.34772 * 119.99836 * 95.99381 * 3 2 1 13 13 O 1.21294 * 120.00034 * 180.02562 * 12 3 2 14 14 C 1.50701 * 120.00271 * 359.97438 * 12 3 2 15 15 F 1.39894 * 110.64467 * 308.31743 * 14 12 3 16 16 C 1.55156 * 110.71835 * 184.97742 * 14 12 3 17 17 C 1.54913 * 101.58075 * 206.13777 * 16 14 12 18 18 N 1.47744 * 104.83915 * 37.09445 * 17 16 14 19 19 C 1.34778 * 125.81954 * 155.83339 * 18 17 16 20 20 O 1.21516 * 120.00115 * 179.90883 * 19 18 17 21 21 O 1.34634 * 120.00277 * 359.90654 * 19 18 17 22 22 C 1.45198 * 117.00251 * 180.02562 * 21 19 18 23 23 C 1.53007 * 109.47421 * 59.99775 * 22 21 19 24 24 C 1.53007 * 109.47375 * 179.97438 * 22 21 19 25 25 C 1.52998 * 109.47145 * 299.99815 * 22 21 19 26 26 C 1.47018 * 108.53422 * 335.75149 * 18 17 16 27 27 H 1.09000 * 109.47096 * 59.99521 * 1 2 3 28 28 H 1.08998 * 109.47404 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46715 * 299.99971 * 1 2 3 30 30 H 1.08997 * 109.47400 * 240.00256 * 2 1 3 31 31 H 1.09004 * 109.47637 * 119.99988 * 2 1 3 32 32 H 0.97002 * 120.00224 * 179.97438 * 7 6 4 33 33 H 1.09000 * 111.00681 * 324.20660 * 16 14 12 34 34 H 1.08997 * 111.00589 * 88.06884 * 16 14 12 35 35 H 1.08992 * 110.36898 * 155.84820 * 17 16 14 36 36 H 1.08997 * 110.36397 * 278.06487 * 17 16 14 37 37 H 1.09003 * 109.46750 * 59.99689 * 23 22 21 38 38 H 1.08997 * 109.47496 * 179.97438 * 23 22 21 39 39 H 1.08998 * 109.46764 * 300.00417 * 23 22 21 40 40 H 1.08995 * 109.46306 * 59.99811 * 24 22 21 41 41 H 1.09003 * 109.46779 * 179.97438 * 24 22 21 42 42 H 1.08991 * 109.46748 * 300.00105 * 24 22 21 43 43 H 1.09006 * 109.46947 * 59.99982 * 25 22 21 44 44 H 1.09001 * 109.47528 * 180.02562 * 25 22 21 45 45 H 1.09000 * 109.46984 * 299.99926 * 25 22 21 46 46 H 1.08998 * 109.88679 * 241.69198 * 26 18 17 47 47 H 1.09001 * 109.88360 * 120.67455 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1300 2.0688 -1.1808 5 1 1.9405 3.1318 -1.2067 6 6 2.4867 1.3982 -2.3443 7 7 3.1488 0.2653 -2.2729 8 14 2.0254 2.1070 -4.0098 9 1 1.2878 3.3816 -3.8182 10 1 3.2579 2.3615 -4.7981 11 1 1.1631 1.1412 -4.7372 12 6 2.3579 1.9759 1.1608 13 8 2.7618 3.1196 1.1609 14 6 2.2347 1.2203 2.4589 15 9 0.9569 0.6654 2.5871 16 6 2.5606 2.1421 3.6636 17 6 3.0426 1.1156 4.7190 18 7 3.7970 0.1060 3.9480 19 6 4.7613 -0.6998 4.4352 20 8 5.3141 -1.4970 3.7034 21 8 5.1122 -0.6215 5.7326 22 6 6.1585 -1.5193 6.1879 23 6 7.4411 -1.2500 5.3982 24 6 6.4188 -1.2856 7.6774 25 6 5.7189 -2.9681 5.9677 26 6 3.3179 0.1256 2.5582 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.3975 -0.2031 -3.0850 33 1 3.3537 2.8466 3.4133 34 1 1.6687 2.6660 4.0072 35 1 3.6934 1.5983 5.4481 36 1 2.1897 0.6562 5.2185 37 1 7.7543 -0.2178 5.5550 38 1 8.2267 -1.9236 5.7402 39 1 7.2559 -1.4162 4.3370 40 1 5.5053 -1.4772 8.2402 41 1 7.2041 -1.9600 8.0192 42 1 6.7322 -0.2535 7.8338 43 1 5.5338 -3.1344 4.9064 44 1 6.5042 -3.6422 6.3099 45 1 4.8053 -3.1600 6.5304 46 1 2.8905 -0.8432 2.2997 47 1 4.1430 0.3582 1.8850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000368541120.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:59 Heat of formation + Delta-G solvation = -144.767664 kcal Electronic energy + Delta-G solvation = -30635.484018 eV Core-core repulsion = 26347.865424 eV Total energy + Delta-G solvation = -4287.618593 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -47.53756 -40.73450 -38.95296 -37.76823 -36.24871 -35.15080 -34.08571 -32.09832 -31.00353 -29.52011 -29.16710 -27.54879 -27.47148 -25.53647 -24.29624 -22.48872 -21.90496 -21.27804 -19.52817 -19.11023 -17.81563 -17.14471 -16.73489 -16.54327 -16.18629 -15.57337 -15.51989 -15.05341 -14.68704 -14.61204 -14.10831 -13.92854 -13.84263 -13.53988 -13.22950 -13.10558 -12.74456 -12.65492 -12.56604 -12.34914 -12.18470 -12.01037 -11.98072 -11.87461 -11.81346 -11.50961 -11.42682 -11.32027 -11.27956 -11.10500 -10.94200 -10.57163 -10.45301 -10.41857 -10.31990 -10.00617 -9.97490 -9.11279 -8.71857 -8.56662 -7.61067 -6.42912 -4.06761 2.03922 2.90575 3.08043 3.22326 3.28459 3.53749 3.81047 4.01744 4.41316 4.42579 4.48770 4.59601 4.63438 4.78016 4.88471 4.97953 5.20738 5.31018 5.33495 5.39567 5.40598 5.42509 5.54482 5.56541 5.63059 5.74862 5.80249 5.82768 5.87440 5.99263 6.10900 6.13744 6.20417 6.27034 6.29016 6.34098 6.42202 6.44566 6.62255 6.93601 7.26510 7.49410 7.51360 8.08236 8.34554 8.38122 9.00536 9.24623 9.78609 10.57996 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018936 B = 0.003342 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.320613 B = 8376.416695 C = 8855.127735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.082 3.918 3 N -0.416 5.416 4 C -0.313 4.313 5 H 0.097 0.903 6 C 0.041 3.959 7 N -0.858 5.858 8 Si 0.919 3.081 9 H -0.266 1.266 10 H -0.280 1.280 11 H -0.278 1.278 12 C 0.440 3.560 13 O -0.566 6.566 14 C 0.098 3.902 15 F -0.188 7.188 16 C -0.134 4.134 17 C 0.103 3.897 18 N -0.602 5.602 19 C 0.669 3.331 20 O -0.563 6.563 21 O -0.362 6.362 22 C 0.135 3.865 23 C -0.185 4.185 24 C -0.139 4.139 25 C -0.184 4.184 26 C 0.117 3.883 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.115 0.885 31 H 0.052 0.948 32 H 0.271 0.729 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.066 0.934 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.090 0.910 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.938 -5.071 16.090 16.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.042 4.042 3 N -0.132 5.132 4 C -0.440 4.440 5 H 0.114 0.886 6 C -0.165 4.165 7 N -0.495 5.495 8 Si 0.745 3.255 9 H -0.190 1.190 10 H -0.206 1.206 11 H -0.204 1.204 12 C 0.225 3.775 13 O -0.450 6.450 14 C 0.075 3.925 15 F -0.168 7.168 16 C -0.172 4.172 17 C -0.020 4.020 18 N -0.343 5.343 19 C 0.425 3.575 20 O -0.452 6.452 21 O -0.277 6.277 22 C 0.098 3.902 23 C -0.242 4.242 24 C -0.196 4.196 25 C -0.241 4.241 26 C -0.005 4.005 27 H 0.075 0.925 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.133 0.867 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.128 0.872 34 H 0.117 0.883 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.108 0.892 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.085 0.915 43 H 0.108 0.892 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.108 0.892 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.469 -5.020 15.788 16.750 hybrid contribution -0.305 -0.062 -0.787 0.846 sum 2.164 -5.083 15.001 15.986 Atomic orbital electron populations 1.22144 0.97279 1.00386 1.02038 1.21898 0.93197 0.84926 1.04144 1.43571 1.52578 1.12167 1.04918 1.19520 1.46281 0.94840 0.83402 0.88582 1.25377 0.94413 0.96461 1.00205 1.69890 1.32601 1.17286 1.29679 0.85994 0.78613 0.79402 0.81485 1.19021 1.20628 1.20406 1.19925 0.84443 0.88651 0.84458 1.90551 1.50726 1.17865 1.85838 1.22133 0.79251 0.93270 0.97809 1.92853 1.40410 1.86593 1.96993 1.23234 1.04404 0.97224 0.92386 1.22489 0.96043 0.88717 0.94736 1.47166 1.37285 1.38576 1.11322 1.17369 0.79196 0.80025 0.80951 1.90922 1.55741 1.39443 1.59110 1.86288 1.55112 1.60872 1.25398 1.22064 0.85261 0.88496 0.94357 1.22529 0.96020 1.02124 1.03502 1.21844 1.02530 1.03053 0.92183 1.22520 1.01751 0.94510 1.05299 1.22546 0.97451 0.99298 0.81218 0.92548 0.93307 0.92857 0.86720 0.92975 0.91913 0.87221 0.88277 0.89541 0.90729 0.92145 0.91230 0.89204 0.91541 0.90226 0.91486 0.89241 0.91230 0.92235 0.89156 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 9.91 37.16 0.37 -2.71 16 2 C 0.08 1.80 5.22 -4.04 -0.02 1.78 16 3 N -0.42 -10.33 2.55 -114.80 -0.29 -10.62 16 4 C -0.31 -8.44 8.92 -14.94 -0.13 -8.57 16 5 H 0.10 2.71 7.72 -52.48 -0.41 2.30 16 6 C 0.04 1.06 4.99 -17.47 -0.09 0.97 16 7 N -0.86 -22.48 11.30 55.50 0.63 -21.85 16 8 Si 0.92 20.04 29.61 -169.99 -5.03 15.00 16 9 H -0.27 -5.79 7.11 56.52 0.40 -5.38 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 12 C 0.44 10.47 6.64 -10.99 -0.07 10.40 16 13 O -0.57 -15.03 15.50 5.55 0.09 -14.95 16 14 C 0.10 1.84 0.94 -89.93 -0.08 1.75 16 15 F -0.19 -3.42 13.38 2.25 0.03 -3.39 16 16 C -0.13 -2.06 6.03 -24.58 -0.15 -2.21 16 17 C 0.10 1.37 6.94 -2.35 -0.02 1.35 16 18 N -0.60 -9.80 3.34 -176.04 -0.59 -10.39 16 19 C 0.67 11.12 7.93 54.06 0.43 11.55 16 20 O -0.56 -10.54 12.21 -19.29 -0.24 -10.78 16 21 O -0.36 -5.09 9.43 -40.31 -0.38 -5.47 16 22 C 0.13 1.54 1.13 -90.61 -0.10 1.44 16 23 C -0.18 -2.13 8.37 37.16 0.31 -1.82 16 24 C -0.14 -1.13 8.85 37.16 0.33 -0.80 16 25 C -0.18 -2.04 8.37 37.16 0.31 -1.73 16 26 C 0.12 2.14 5.33 -3.06 -0.02 2.12 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 1.00 6.36 -51.93 -0.33 0.67 16 30 H 0.12 2.76 5.36 -51.93 -0.28 2.48 16 31 H 0.05 1.06 3.97 -51.93 -0.21 0.85 16 32 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 33 H 0.11 1.83 7.33 -51.93 -0.38 1.45 16 34 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 35 H 0.09 1.00 8.05 -51.93 -0.42 0.58 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 1.30 5.88 -51.93 -0.31 1.00 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.09 1.25 5.88 -51.93 -0.31 0.94 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.09 1.64 6.63 -51.93 -0.34 1.29 16 47 H 0.10 1.99 7.81 -51.93 -0.41 1.58 16 LS Contribution 371.09 15.07 5.59 5.59 Total: -1.00 -30.62 371.09 -6.29 -36.91 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: -7.16 Total: 6.43 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: 1.07 Total: 13.52 kcal Atomic # 7 Polarization: -42.62 SS G_CDS: -0.25 Total: -42.87 kcal Atomic # 8 Polarization: -30.66 SS G_CDS: -0.53 Total: -31.19 kcal Atomic # 9 Polarization: -3.42 SS G_CDS: 0.03 Total: -3.39 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.00 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.62 -6.29 -36.91 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368541120.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.859 kcal (2) G-P(sol) polarization free energy of solvation -30.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds