Wall clock time and date at job start Tue Mar 31 2020 17:19:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46508 * 109.47324 * 2 1 4 4 C 1.37096 * 119.99634 * 275.99452 * 3 2 1 5 5 H 1.08009 * 119.99536 * 145.68069 * 4 3 2 6 6 C 1.38946 * 120.00286 * 325.68401 * 4 3 2 7 7 N 1.31408 * 119.99816 * 336.56790 * 6 4 3 8 8 Si 1.86796 * 120.00045 * 156.57362 * 6 4 3 9 9 H 1.48503 * 109.47289 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47259 * 119.99648 * 8 6 4 11 11 H 1.48506 * 109.47131 * 239.99639 * 8 6 4 12 12 C 1.34772 * 119.99836 * 95.99381 * 3 2 1 13 13 O 1.21294 * 120.00034 * 180.02562 * 12 3 2 14 14 C 1.50701 * 120.00271 * 359.97438 * 12 3 2 15 15 F 1.39894 * 110.64467 * 308.31743 * 14 12 3 16 16 C 1.55156 * 110.71835 * 184.97742 * 14 12 3 17 17 C 1.54913 * 101.58075 * 206.13777 * 16 14 12 18 18 N 1.47744 * 104.83915 * 37.09445 * 17 16 14 19 19 C 1.34778 * 125.81954 * 155.83339 * 18 17 16 20 20 O 1.21516 * 120.00115 * 179.90883 * 19 18 17 21 21 O 1.34634 * 120.00277 * 359.90654 * 19 18 17 22 22 C 1.45198 * 117.00251 * 180.02562 * 21 19 18 23 23 C 1.53007 * 109.47421 * 59.99775 * 22 21 19 24 24 C 1.53007 * 109.47375 * 179.97438 * 22 21 19 25 25 C 1.52998 * 109.47145 * 299.99815 * 22 21 19 26 26 C 1.47018 * 108.53422 * 335.75149 * 18 17 16 27 27 H 1.09000 * 109.47096 * 59.99521 * 1 2 3 28 28 H 1.08998 * 109.47404 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46715 * 299.99971 * 1 2 3 30 30 H 1.08997 * 109.47400 * 240.00256 * 2 1 3 31 31 H 1.09004 * 109.47637 * 119.99988 * 2 1 3 32 32 H 0.97002 * 120.00224 * 179.97438 * 7 6 4 33 33 H 1.09000 * 111.00681 * 324.20660 * 16 14 12 34 34 H 1.08997 * 111.00589 * 88.06884 * 16 14 12 35 35 H 1.08992 * 110.36898 * 155.84820 * 17 16 14 36 36 H 1.08997 * 110.36397 * 278.06487 * 17 16 14 37 37 H 1.09003 * 109.46750 * 59.99689 * 23 22 21 38 38 H 1.08997 * 109.47496 * 179.97438 * 23 22 21 39 39 H 1.08998 * 109.46764 * 300.00417 * 23 22 21 40 40 H 1.08995 * 109.46306 * 59.99811 * 24 22 21 41 41 H 1.09003 * 109.46779 * 179.97438 * 24 22 21 42 42 H 1.08991 * 109.46748 * 300.00105 * 24 22 21 43 43 H 1.09006 * 109.46947 * 59.99982 * 25 22 21 44 44 H 1.09001 * 109.47528 * 180.02562 * 25 22 21 45 45 H 1.09000 * 109.46984 * 299.99926 * 25 22 21 46 46 H 1.08998 * 109.88679 * 241.69198 * 26 18 17 47 47 H 1.09001 * 109.88360 * 120.67455 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1300 2.0688 -1.1808 5 1 1.9405 3.1318 -1.2067 6 6 2.4867 1.3982 -2.3443 7 7 3.1488 0.2653 -2.2729 8 14 2.0254 2.1070 -4.0098 9 1 1.2878 3.3816 -3.8182 10 1 3.2579 2.3615 -4.7981 11 1 1.1631 1.1412 -4.7372 12 6 2.3579 1.9759 1.1608 13 8 2.7618 3.1196 1.1609 14 6 2.2347 1.2203 2.4589 15 9 0.9569 0.6654 2.5871 16 6 2.5606 2.1421 3.6636 17 6 3.0426 1.1156 4.7190 18 7 3.7970 0.1060 3.9480 19 6 4.7613 -0.6998 4.4352 20 8 5.3141 -1.4970 3.7034 21 8 5.1122 -0.6215 5.7326 22 6 6.1585 -1.5193 6.1879 23 6 7.4411 -1.2500 5.3982 24 6 6.4188 -1.2856 7.6774 25 6 5.7189 -2.9681 5.9677 26 6 3.3179 0.1256 2.5582 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.3975 -0.2031 -3.0850 33 1 3.3537 2.8466 3.4133 34 1 1.6687 2.6660 4.0072 35 1 3.6934 1.5983 5.4481 36 1 2.1897 0.6562 5.2185 37 1 7.7543 -0.2178 5.5550 38 1 8.2267 -1.9236 5.7402 39 1 7.2559 -1.4162 4.3370 40 1 5.5053 -1.4772 8.2402 41 1 7.2041 -1.9600 8.0192 42 1 6.7322 -0.2535 7.8338 43 1 5.5338 -3.1344 4.9064 44 1 6.5042 -3.6422 6.3099 45 1 4.8053 -3.1600 6.5304 46 1 2.8905 -0.8432 2.2997 47 1 4.1430 0.3582 1.8850 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000368541120.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:58 Heat of formation + Delta-G solvation = -163.122371 kcal Electronic energy + Delta-G solvation = -30636.279937 eV Core-core repulsion = 26347.865424 eV Total energy + Delta-G solvation = -4288.414513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -49.05900 -41.93139 -40.63965 -39.14824 -37.56885 -37.02096 -35.08259 -34.04981 -32.36994 -31.27579 -30.56688 -28.36141 -28.27002 -27.38460 -25.75509 -24.13649 -23.25918 -22.60657 -20.98018 -20.44249 -19.10698 -18.94729 -18.43353 -17.74604 -17.52640 -17.26454 -16.97143 -16.54745 -16.05126 -15.79372 -15.73244 -15.32349 -15.12270 -14.98465 -14.75412 -14.43759 -14.36709 -13.91826 -13.74436 -13.67806 -13.52056 -13.33820 -13.10418 -12.93813 -12.88249 -12.86118 -12.76569 -12.70473 -12.64687 -12.45843 -12.31070 -12.28944 -12.11420 -11.98331 -11.73033 -11.41264 -11.18882 -11.03469 -10.49804 -9.99921 -9.57182 -8.40088 -6.13224 0.81687 1.31429 1.41724 1.55459 1.62614 1.73619 2.20964 2.63904 2.80721 2.88251 2.99338 3.08508 3.48345 3.69535 3.75964 3.80556 3.90590 3.95450 4.03196 4.21999 4.35570 4.46511 4.51727 4.61222 4.62157 4.62755 4.67929 4.77573 4.79579 4.81855 4.85264 4.89989 4.91734 5.01980 5.04892 5.15786 5.26845 5.29473 5.34512 5.40979 5.41322 5.56036 6.09839 6.24028 6.37867 7.03137 7.12924 7.30364 7.84498 8.59959 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.018936 B = 0.003342 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.320613 B = 8376.416695 C = 8855.127735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.082 3.918 3 N -0.429 5.429 4 C -0.347 4.347 5 H 0.072 0.928 6 C 0.009 3.991 7 N -0.879 5.879 8 Si 0.983 3.017 9 H -0.268 1.268 10 H -0.278 1.278 11 H -0.263 1.263 12 C 0.428 3.572 13 O -0.604 6.604 14 C 0.107 3.893 15 F -0.181 7.181 16 C -0.128 4.128 17 C 0.109 3.891 18 N -0.606 5.606 19 C 0.668 3.332 20 O -0.591 6.591 21 O -0.356 6.356 22 C 0.122 3.878 23 C -0.183 4.183 24 C -0.132 4.132 25 C -0.180 4.180 26 C 0.127 3.873 27 H 0.043 0.957 28 H 0.079 0.921 29 H 0.057 0.943 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.277 0.723 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.104 0.896 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.094 0.906 45 H 0.065 0.935 46 H 0.090 0.910 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.497 -5.876 18.220 19.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.041 4.041 3 N -0.145 5.145 4 C -0.475 4.475 5 H 0.090 0.910 6 C -0.195 4.195 7 N -0.516 5.516 8 Si 0.806 3.194 9 H -0.192 1.192 10 H -0.203 1.203 11 H -0.188 1.188 12 C 0.214 3.786 13 O -0.490 6.490 14 C 0.085 3.915 15 F -0.161 7.161 16 C -0.166 4.166 17 C -0.012 4.012 18 N -0.347 5.347 19 C 0.424 3.576 20 O -0.482 6.482 21 O -0.271 6.271 22 C 0.086 3.914 23 C -0.240 4.240 24 C -0.189 4.189 25 C -0.237 4.237 26 C 0.004 3.996 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.112 0.888 34 H 0.141 0.859 35 H 0.129 0.871 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.114 0.886 39 H 0.072 0.928 40 H 0.092 0.908 41 H 0.123 0.877 42 H 0.089 0.911 43 H 0.074 0.926 44 H 0.113 0.887 45 H 0.084 0.916 46 H 0.108 0.892 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.020 -5.848 17.954 18.990 hybrid contribution -0.081 0.153 -1.421 1.432 sum 1.939 -5.695 16.533 17.593 Atomic orbital electron populations 1.22059 0.94974 1.02257 1.01580 1.21955 0.95056 0.83399 1.03705 1.43828 1.52753 1.13034 1.04884 1.19480 1.48395 0.94370 0.85208 0.90988 1.26129 0.93586 0.96701 1.03045 1.69960 1.32615 1.18116 1.30891 0.85051 0.78391 0.78838 0.77121 1.19218 1.20330 1.18772 1.20722 0.83322 0.88546 0.85967 1.90508 1.52032 1.19568 1.86880 1.21824 0.79599 0.93702 0.96386 1.92861 1.39905 1.86502 1.96823 1.23264 1.04993 0.97059 0.91289 1.22679 0.97037 0.87505 0.93965 1.47169 1.37634 1.39273 1.10639 1.17498 0.78857 0.79617 0.81674 1.90921 1.56581 1.40601 1.60080 1.86310 1.55831 1.61507 1.23442 1.22534 0.84295 0.88266 0.96347 1.22501 0.97124 1.02946 1.01400 1.21871 1.03763 1.04027 0.89195 1.22479 1.03052 0.94981 1.03217 1.22180 0.96176 0.98922 0.82316 0.93795 0.90222 0.92441 0.88798 0.91684 0.91320 0.88816 0.85913 0.87070 0.88195 0.91975 0.88626 0.92750 0.90802 0.87709 0.91105 0.92580 0.88726 0.91551 0.89206 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.68 9.91 71.98 0.71 -4.97 16 2 C 0.08 3.64 5.22 86.38 0.45 4.09 16 3 N -0.43 -22.02 2.55 -635.52 -1.62 -23.64 16 4 C -0.35 -19.43 8.92 84.04 0.75 -18.68 16 5 H 0.07 4.29 7.72 -2.91 -0.02 4.26 16 6 C 0.01 0.49 4.99 84.93 0.42 0.92 16 7 N -0.88 -47.01 11.30 21.66 0.24 -46.76 16 8 Si 0.98 41.57 29.61 68.60 2.03 43.60 16 9 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 10 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 11 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 12 C 0.43 21.02 6.64 87.66 0.58 21.60 16 13 O -0.60 -33.39 15.50 -3.07 -0.05 -33.44 16 14 C 0.11 4.02 0.94 -10.35 -0.01 4.01 16 15 F -0.18 -6.33 13.38 44.97 0.60 -5.73 16 16 C -0.13 -3.78 6.03 31.99 0.19 -3.59 16 17 C 0.11 2.64 6.94 86.79 0.60 3.25 16 18 N -0.61 -19.32 3.34 -941.28 -3.14 -22.46 16 19 C 0.67 21.97 7.93 129.79 1.03 23.00 16 20 O -0.59 -22.73 12.21 19.79 0.24 -22.49 16 21 O -0.36 -9.45 9.43 -55.43 -0.52 -9.97 16 22 C 0.12 2.55 1.13 -10.79 -0.01 2.53 16 23 C -0.18 -4.02 8.37 71.98 0.60 -3.41 16 24 C -0.13 -1.68 8.85 71.98 0.64 -1.05 16 25 C -0.18 -3.72 8.37 71.98 0.60 -3.12 16 26 C 0.13 4.74 5.33 86.73 0.46 5.20 16 27 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.06 2.10 6.36 -2.39 -0.02 2.08 16 30 H 0.09 4.62 5.36 -2.39 -0.01 4.61 16 31 H 0.06 2.67 3.97 -2.38 -0.01 2.66 16 32 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 33 H 0.09 3.12 7.33 -2.39 -0.02 3.10 16 34 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 35 H 0.11 2.20 8.05 -2.39 -0.02 2.19 16 36 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.05 1.61 5.88 -2.39 -0.01 1.60 16 40 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.06 1.57 5.88 -2.38 -0.01 1.55 16 44 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.09 3.31 6.63 -2.39 -0.02 3.29 16 47 H 0.06 2.77 7.81 -2.39 -0.02 2.75 16 Total: -1.00 -69.87 371.09 5.79 -64.08 By element: Atomic # 1 Polarization: 26.07 SS G_CDS: 0.98 Total: 27.05 kcal Atomic # 6 Polarization: 22.75 SS G_CDS: 7.03 Total: 29.78 kcal Atomic # 7 Polarization: -88.35 SS G_CDS: -4.52 Total: -92.87 kcal Atomic # 8 Polarization: -65.58 SS G_CDS: -0.33 Total: -65.91 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 0.60 Total: -5.73 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -69.87 5.79 -64.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000368541120.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.047 kcal (2) G-P(sol) polarization free energy of solvation -69.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds