Wall clock time and date at job start Tue Mar 31 2020 15:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47436 * 2 1 4 4 N 1.46504 * 109.47244 * 239.99955 * 2 1 3 5 5 C 1.34777 * 119.99797 * 110.01673 * 4 2 1 6 6 O 1.21583 * 120.00315 * 0.27274 * 5 4 2 7 7 N 1.34772 * 119.99682 * 180.27469 * 5 4 2 8 8 C 1.46500 * 119.99858 * 179.97438 * 7 5 4 9 9 C 1.53011 * 109.47114 * 180.34226 * 8 7 5 10 10 C 1.50701 * 115.54253 * 54.79952 * 9 8 7 11 11 H 1.07998 * 119.99792 * 264.67811 * 10 9 8 12 12 C 1.37875 * 120.00037 * 84.68698 * 10 9 8 13 13 N 1.31518 * 119.99977 * 356.78205 * 12 10 9 14 14 Si 1.86805 * 120.00063 * 176.78854 * 12 10 9 15 15 H 1.48497 * 109.47207 * 89.99508 * 14 12 10 16 16 H 1.48497 * 109.47000 * 209.99670 * 14 12 10 17 17 H 1.48498 * 109.46748 * 329.99474 * 14 12 10 18 18 C 1.52998 * 117.50337 * 269.12971 * 9 8 7 19 19 C 1.52992 * 117.49872 * 200.46706 * 9 8 7 20 20 C 1.52997 * 109.47360 * 119.99678 * 2 1 3 21 21 H 1.09001 * 110.83048 * 298.67973 * 20 2 1 22 22 C 1.54711 * 110.93466 * 62.42317 * 20 2 1 23 23 O 1.43780 * 102.78367 * 143.44456 * 22 20 2 24 24 C 1.36135 * 109.23942 * 332.26200 * 23 22 20 25 25 C 1.39284 * 129.88520 * 198.43795 * 24 23 22 26 26 C 1.37930 * 120.23741 * 180.98716 * 25 24 23 27 27 C 1.38282 * 120.35515 * 359.95422 * 26 25 24 28 28 C 1.38348 * 119.76456 * 359.85556 * 27 26 25 29 29 C 1.37743 * 119.97871 * 0.02562 * 28 27 26 30 30 H 1.09003 * 109.47124 * 55.97181 * 1 2 3 31 31 H 1.08994 * 109.47098 * 175.97249 * 1 2 3 32 32 H 1.08999 * 109.47328 * 295.97548 * 1 2 3 33 33 H 0.96995 * 119.99802 * 290.29491 * 4 2 1 34 34 H 0.97005 * 119.99983 * 0.02562 * 7 5 4 35 35 H 1.08997 * 109.47619 * 300.34806 * 8 7 5 36 36 H 1.09000 * 109.47194 * 60.35386 * 8 7 5 37 37 H 0.97001 * 119.99639 * 185.01071 * 13 12 10 38 38 H 1.09003 * 117.49388 * 359.97438 * 18 9 8 39 39 H 1.08999 * 117.50121 * 145.01813 * 18 9 8 40 40 H 1.09000 * 117.49848 * 214.97956 * 19 9 8 41 41 H 1.09003 * 117.50330 * 359.97438 * 19 9 8 42 42 H 1.09001 * 110.74887 * 261.76666 * 22 20 2 43 43 H 1.09000 * 110.75076 * 25.12103 * 22 20 2 44 44 H 1.08000 * 119.88585 * 0.98726 * 25 24 23 45 45 H 1.08010 * 119.82432 * 179.97438 * 26 25 24 46 46 H 1.08002 * 120.11870 * 179.87431 * 27 26 25 47 47 H 1.08007 * 120.01481 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.6197 0.0081 -2.1794 6 8 2.7613 1.2108 -2.0715 7 7 3.0640 -0.6265 -3.2823 8 6 3.7171 0.1331 -4.3513 9 6 4.1147 -0.8173 -5.4826 10 6 2.9990 -1.6591 -6.0464 11 1 2.8414 -2.6625 -5.6796 12 6 2.1797 -1.1482 -7.0306 13 7 2.3313 0.0948 -7.4327 14 14 0.8543 -2.2214 -7.7929 15 1 -0.4043 -2.0791 -7.0179 16 1 0.6216 -1.7981 -9.1971 17 1 1.2923 -3.6402 -7.7696 18 6 5.5101 -1.4418 -5.4231 19 6 5.2037 -0.3482 -6.4494 20 6 2.0400 -0.7212 1.2492 21 1 1.7083 -0.2113 2.1537 22 6 1.5936 -2.2025 1.2534 23 8 2.7261 -2.8744 1.8307 24 6 3.8544 -2.1601 1.5661 25 6 5.1901 -2.5530 1.6058 26 6 6.1893 -1.6477 1.3150 27 6 5.8749 -0.3432 0.9808 28 6 4.5504 0.0539 0.9352 29 6 3.5508 -0.8491 1.2228 30 1 -0.3633 0.5751 -0.8517 31 1 -0.3633 -1.0251 -0.0722 32 1 -0.3634 0.4501 0.9238 33 1 1.9053 -1.6501 -1.2823 34 1 2.9506 -1.5860 -3.3685 35 1 3.0289 0.8864 -4.7345 36 1 4.6082 0.6218 -3.9575 37 1 1.7097 0.4770 -8.0719 38 1 6.1451 -1.1753 -4.5782 39 1 5.6214 -2.4614 -5.7922 40 1 5.1135 -0.6488 -7.4932 41 1 5.6367 0.6376 -6.2798 42 1 0.7074 -2.3370 1.8735 43 1 1.4126 -2.5541 0.2377 44 1 5.4444 -3.5700 1.8652 45 1 7.2229 -1.9594 1.3483 46 1 6.6604 0.3630 0.7558 47 1 4.3002 1.0717 0.6742 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373793362.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:42 Heat of formation + Delta-G solvation = -11.243410 kcal Electronic energy + Delta-G solvation = -28946.563380 eV Core-core repulsion = 25095.504058 eV Total energy + Delta-G solvation = -3851.059322 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.46929 -39.34112 -37.47387 -36.90356 -35.83246 -33.24025 -32.09936 -31.94890 -30.48295 -29.98572 -28.46012 -26.15384 -25.15361 -24.34435 -22.84251 -21.99023 -21.20579 -20.70755 -19.89471 -19.38474 -17.91102 -17.43794 -16.75319 -16.36449 -16.00702 -15.60576 -15.49082 -14.82792 -14.60609 -14.30197 -14.04830 -13.94726 -13.71027 -13.48877 -13.31071 -12.97804 -12.87641 -12.65907 -12.54171 -12.36043 -12.05885 -11.81107 -11.58945 -11.54132 -11.02641 -11.00576 -10.93695 -10.81583 -10.71768 -10.53731 -10.24235 -9.69772 -9.46678 -8.98117 -8.94399 -8.84274 -8.49481 -8.26601 -8.19892 -7.91076 -6.08222 -4.17333 1.26211 1.36189 3.13120 3.22408 3.23931 3.32217 3.33633 3.68703 3.82476 4.18684 4.33942 4.43565 4.61290 4.76799 4.85030 4.97201 5.03208 5.14275 5.20857 5.27398 5.30073 5.36616 5.37654 5.40908 5.52804 5.60889 5.65664 5.93023 5.99472 6.05836 6.12098 6.28006 6.35105 6.39221 6.48579 6.50287 6.54248 6.59541 6.72733 6.81262 6.89016 7.10962 7.12120 7.36525 7.43191 7.44177 7.63484 7.80121 8.34188 8.70568 8.83750 9.25193 9.49752 10.99709 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013012 B = 0.003680 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.358607 B = 7607.535105 C = 8431.688503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.168 3.832 3 H 0.107 0.893 4 N -0.746 5.746 5 C 0.703 3.297 6 O -0.606 6.606 7 N -0.716 5.716 8 C 0.185 3.815 9 C 0.027 3.973 10 C -0.498 4.498 11 H 0.058 0.942 12 C 0.075 3.925 13 N -0.873 5.873 14 Si 0.889 3.111 15 H -0.281 1.281 16 H -0.286 1.286 17 H -0.274 1.274 18 C -0.211 4.211 19 C -0.147 4.147 20 C -0.089 4.089 21 H 0.105 0.895 22 C 0.056 3.944 23 O -0.306 6.306 24 C 0.101 3.899 25 C -0.142 4.142 26 C -0.087 4.087 27 C -0.146 4.146 28 C -0.056 4.056 29 C -0.155 4.155 30 H 0.066 0.934 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.390 0.610 34 H 0.396 0.604 35 H 0.067 0.933 36 H 0.033 0.967 37 H 0.261 0.739 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.083 0.917 41 H 0.064 0.936 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.124 0.876 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.660 -3.209 18.753 19.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.061 3.939 3 H 0.125 0.875 4 N -0.403 5.403 5 C 0.403 3.597 6 O -0.486 6.486 7 N -0.368 5.368 8 C 0.061 3.939 9 C 0.026 3.974 10 C -0.536 4.536 11 H 0.077 0.923 12 C -0.129 4.129 13 N -0.509 5.509 14 Si 0.716 3.284 15 H -0.207 1.207 16 H -0.212 1.212 17 H -0.199 1.199 18 C -0.248 4.248 19 C -0.185 4.185 20 C -0.108 4.108 21 H 0.123 0.877 22 C -0.019 4.019 23 O -0.220 6.220 24 C 0.056 3.944 25 C -0.160 4.160 26 C -0.105 4.105 27 C -0.164 4.164 28 C -0.074 4.074 29 C -0.156 4.156 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.224 0.776 34 H 0.230 0.770 35 H 0.085 0.915 36 H 0.051 0.949 37 H 0.071 0.929 38 H 0.083 0.917 39 H 0.095 0.905 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.125 0.875 43 H 0.094 0.906 44 H 0.142 0.858 45 H 0.146 0.854 46 H 0.144 0.856 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.740 -2.169 18.729 18.869 hybrid contribution -1.006 -1.290 -0.760 1.803 sum -0.265 -3.459 17.969 18.301 Atomic orbital electron populations 1.22236 0.95021 1.02374 1.02754 1.20588 0.93280 0.98025 0.81983 0.87492 1.45124 1.65019 1.10524 1.19601 1.15976 0.78257 0.85319 0.80174 1.90838 1.64143 1.12781 1.80797 1.45086 1.62228 1.11594 1.17889 1.20755 0.94715 0.93531 0.84921 1.19042 0.87576 0.96482 0.94275 1.20302 1.13868 0.99395 1.20052 0.92346 1.24972 0.97157 0.95034 0.95757 1.69979 1.35936 1.13027 1.31991 0.86650 0.82076 0.80873 0.78755 1.20725 1.21181 1.19857 1.23043 1.02466 0.97732 1.01571 1.22470 1.04268 0.95663 0.96097 1.21878 0.91813 0.96857 1.00238 0.87659 1.23901 0.88558 0.90065 0.99376 1.86817 1.14141 1.48971 1.72080 1.19539 0.88242 0.89942 0.96681 1.20203 0.88812 1.00606 1.06416 1.20848 0.98653 0.93065 0.97900 1.21048 0.96083 0.96531 1.02763 1.20364 0.91544 0.99310 0.96204 1.20541 0.94823 0.94075 1.06168 0.91489 0.92409 0.91561 0.77601 0.76999 0.91486 0.94908 0.92891 0.91674 0.90481 0.89816 0.91721 0.87509 0.90581 0.85766 0.85382 0.85637 0.85728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.59 9.25 37.16 0.34 -1.25 16 2 C 0.17 1.96 2.68 -67.93 -0.18 1.78 16 3 H 0.11 1.50 6.96 -51.93 -0.36 1.14 16 4 N -0.75 -10.49 4.35 -58.68 -0.26 -10.75 16 5 C 0.70 13.28 8.57 -86.92 -0.74 12.53 16 6 O -0.61 -13.46 15.70 5.29 0.08 -13.38 16 7 N -0.72 -14.23 5.39 -65.22 -0.35 -14.58 16 8 C 0.18 4.22 5.57 -4.04 -0.02 4.20 16 9 C 0.03 0.64 1.53 -155.66 -0.24 0.40 16 10 C -0.50 -12.69 8.16 -34.44 -0.28 -12.97 16 11 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16 12 C 0.08 1.97 5.41 -17.82 -0.10 1.88 16 13 N -0.87 -24.15 12.85 55.43 0.71 -23.44 16 14 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 15 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 16 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 18 C -0.21 -4.44 9.93 -26.70 -0.26 -4.70 16 19 C -0.15 -3.37 9.40 -26.70 -0.25 -3.62 16 20 C -0.09 -0.90 3.07 -90.41 -0.28 -1.17 16 21 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 22 C 0.06 0.52 6.49 38.06 0.25 0.77 16 23 O -0.31 -3.71 11.10 -20.17 -0.22 -3.94 16 24 C 0.10 1.28 7.04 -38.96 -0.27 1.01 16 25 C -0.14 -1.67 10.06 -39.31 -0.40 -2.07 16 26 C -0.09 -0.96 10.01 -39.68 -0.40 -1.35 16 27 C -0.15 -1.74 10.07 -39.52 -0.40 -2.14 16 28 C -0.06 -0.73 9.93 -39.72 -0.39 -1.13 16 29 C -0.16 -1.93 5.21 -104.10 -0.54 -2.48 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.48 7.48 -51.93 -0.39 0.09 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.39 4.83 6.97 -40.82 -0.28 4.54 16 34 H 0.40 7.38 8.05 -40.82 -0.33 7.05 16 35 H 0.07 1.76 8.14 -51.93 -0.42 1.34 16 36 H 0.03 0.74 8.09 -51.93 -0.42 0.32 16 37 H 0.26 6.97 8.32 -40.82 -0.34 6.63 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 40 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 41 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 42 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.69 6.12 -51.93 -0.32 0.37 16 44 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 45 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 46 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 47 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 LS Contribution 387.94 15.07 5.85 5.85 Total: -1.00 -30.76 387.94 -10.52 -41.28 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -7.14 Total: 13.89 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -4.17 Total: -10.31 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.11 Total: -48.77 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.14 Total: -17.32 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.76 -10.52 -41.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373793362.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.037 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds