Wall clock time and date at job start Tue Mar 31 2020 15:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.47436 * 2 1 4 4 N 1.46504 * 109.47244 * 239.99955 * 2 1 3 5 5 C 1.34777 * 119.99797 * 110.01673 * 4 2 1 6 6 O 1.21583 * 120.00315 * 0.27274 * 5 4 2 7 7 N 1.34772 * 119.99682 * 180.27469 * 5 4 2 8 8 C 1.46500 * 119.99858 * 179.97438 * 7 5 4 9 9 C 1.53011 * 109.47114 * 180.34226 * 8 7 5 10 10 C 1.50701 * 115.54253 * 54.79952 * 9 8 7 11 11 H 1.07998 * 119.99792 * 264.67811 * 10 9 8 12 12 C 1.37875 * 120.00037 * 84.68698 * 10 9 8 13 13 N 1.31518 * 119.99977 * 356.78205 * 12 10 9 14 14 Si 1.86805 * 120.00063 * 176.78854 * 12 10 9 15 15 H 1.48497 * 109.47207 * 89.99508 * 14 12 10 16 16 H 1.48497 * 109.47000 * 209.99670 * 14 12 10 17 17 H 1.48498 * 109.46748 * 329.99474 * 14 12 10 18 18 C 1.52998 * 117.50337 * 269.12971 * 9 8 7 19 19 C 1.52992 * 117.49872 * 200.46706 * 9 8 7 20 20 C 1.52997 * 109.47360 * 119.99678 * 2 1 3 21 21 H 1.09001 * 110.83048 * 298.67973 * 20 2 1 22 22 C 1.54711 * 110.93466 * 62.42317 * 20 2 1 23 23 O 1.43780 * 102.78367 * 143.44456 * 22 20 2 24 24 C 1.36135 * 109.23942 * 332.26200 * 23 22 20 25 25 C 1.39284 * 129.88520 * 198.43795 * 24 23 22 26 26 C 1.37930 * 120.23741 * 180.98716 * 25 24 23 27 27 C 1.38282 * 120.35515 * 359.95422 * 26 25 24 28 28 C 1.38348 * 119.76456 * 359.85556 * 27 26 25 29 29 C 1.37743 * 119.97871 * 0.02562 * 28 27 26 30 30 H 1.09003 * 109.47124 * 55.97181 * 1 2 3 31 31 H 1.08994 * 109.47098 * 175.97249 * 1 2 3 32 32 H 1.08999 * 109.47328 * 295.97548 * 1 2 3 33 33 H 0.96995 * 119.99802 * 290.29491 * 4 2 1 34 34 H 0.97005 * 119.99983 * 0.02562 * 7 5 4 35 35 H 1.08997 * 109.47619 * 300.34806 * 8 7 5 36 36 H 1.09000 * 109.47194 * 60.35386 * 8 7 5 37 37 H 0.97001 * 119.99639 * 185.01071 * 13 12 10 38 38 H 1.09003 * 117.49388 * 359.97438 * 18 9 8 39 39 H 1.08999 * 117.50121 * 145.01813 * 18 9 8 40 40 H 1.09000 * 117.49848 * 214.97956 * 19 9 8 41 41 H 1.09003 * 117.50330 * 359.97438 * 19 9 8 42 42 H 1.09001 * 110.74887 * 261.76666 * 22 20 2 43 43 H 1.09000 * 110.75076 * 25.12103 * 22 20 2 44 44 H 1.08000 * 119.88585 * 0.98726 * 25 24 23 45 45 H 1.08010 * 119.82432 * 179.97438 * 26 25 24 46 46 H 1.08002 * 120.11870 * 179.87431 * 27 26 25 47 47 H 1.08007 * 120.01481 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.6197 0.0081 -2.1794 6 8 2.7613 1.2108 -2.0715 7 7 3.0640 -0.6265 -3.2823 8 6 3.7171 0.1331 -4.3513 9 6 4.1147 -0.8173 -5.4826 10 6 2.9990 -1.6591 -6.0464 11 1 2.8414 -2.6625 -5.6796 12 6 2.1797 -1.1482 -7.0306 13 7 2.3313 0.0948 -7.4327 14 14 0.8543 -2.2214 -7.7929 15 1 -0.4043 -2.0791 -7.0179 16 1 0.6216 -1.7981 -9.1971 17 1 1.2923 -3.6402 -7.7696 18 6 5.5101 -1.4418 -5.4231 19 6 5.2037 -0.3482 -6.4494 20 6 2.0400 -0.7212 1.2492 21 1 1.7083 -0.2113 2.1537 22 6 1.5936 -2.2025 1.2534 23 8 2.7261 -2.8744 1.8307 24 6 3.8544 -2.1601 1.5661 25 6 5.1901 -2.5530 1.6058 26 6 6.1893 -1.6477 1.3150 27 6 5.8749 -0.3432 0.9808 28 6 4.5504 0.0539 0.9352 29 6 3.5508 -0.8491 1.2228 30 1 -0.3633 0.5751 -0.8517 31 1 -0.3633 -1.0251 -0.0722 32 1 -0.3634 0.4501 0.9238 33 1 1.9053 -1.6501 -1.2823 34 1 2.9506 -1.5860 -3.3685 35 1 3.0289 0.8864 -4.7345 36 1 4.6082 0.6218 -3.9575 37 1 1.7097 0.4770 -8.0719 38 1 6.1451 -1.1753 -4.5782 39 1 5.6214 -2.4614 -5.7922 40 1 5.1135 -0.6488 -7.4932 41 1 5.6367 0.6376 -6.2798 42 1 0.7074 -2.3370 1.8735 43 1 1.4126 -2.5541 0.2377 44 1 5.4444 -3.5700 1.8652 45 1 7.2229 -1.9594 1.3483 46 1 6.6604 0.3630 0.7558 47 1 4.3002 1.0717 0.6742 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000373793362.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:41:41 Heat of formation + Delta-G solvation = -29.231615 kcal Electronic energy + Delta-G solvation = -28947.343407 eV Core-core repulsion = 25095.504058 eV Total energy + Delta-G solvation = -3851.839349 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.36566 -40.79693 -38.63657 -38.31873 -37.04863 -34.91225 -33.97431 -33.15807 -31.48677 -30.87236 -29.28893 -27.95653 -26.98369 -25.22188 -23.77328 -23.01095 -22.86096 -22.04375 -21.30517 -20.91373 -19.38274 -18.36468 -18.09416 -17.54852 -17.13084 -16.84167 -16.65190 -16.43459 -16.20515 -15.84584 -15.39704 -15.05804 -14.87986 -14.61330 -14.39347 -14.34468 -14.13087 -13.82950 -13.59412 -13.51432 -13.33256 -13.15192 -12.89079 -12.86457 -12.84217 -12.45159 -12.34806 -12.03401 -11.83253 -11.71427 -11.62123 -11.44844 -11.18152 -10.87178 -10.44436 -10.26465 -10.03709 -9.81941 -9.56079 -9.09243 -8.08491 -6.22093 0.36925 0.43205 1.41998 1.45033 1.53023 1.86956 2.29241 2.35509 2.42999 2.78945 3.19842 3.32280 3.38001 3.59644 3.63113 3.75776 4.00157 4.11912 4.21013 4.26485 4.32594 4.40935 4.53264 4.55543 4.56154 4.57341 4.68097 4.71896 4.74333 4.80149 4.87729 4.95774 5.00688 5.08826 5.12677 5.28035 5.31432 5.38913 5.47946 5.56002 5.59049 5.62195 5.65122 5.67000 5.75598 5.79833 6.15858 6.24939 6.38153 6.84889 7.25490 7.47632 7.74224 8.99219 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013012 B = 0.003680 C = 0.003320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.358607 B = 7607.535105 C = 8431.688503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.167 3.833 3 H 0.080 0.920 4 N -0.728 5.728 5 C 0.701 3.299 6 O -0.643 6.643 7 N -0.715 5.715 8 C 0.203 3.797 9 C 0.005 3.995 10 C -0.500 4.500 11 H 0.063 0.937 12 C 0.027 3.973 13 N -0.907 5.907 14 Si 0.949 3.051 15 H -0.279 1.279 16 H -0.291 1.291 17 H -0.264 1.264 18 C -0.179 4.179 19 C -0.157 4.157 20 C -0.080 4.080 21 H 0.127 0.873 22 C 0.055 3.945 23 O -0.316 6.316 24 C 0.086 3.914 25 C -0.150 4.150 26 C -0.086 4.086 27 C -0.157 4.157 28 C -0.077 4.077 29 C -0.168 4.168 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.401 0.599 34 H 0.403 0.597 35 H 0.024 0.976 36 H 0.031 0.969 37 H 0.258 0.742 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.140 0.860 43 H 0.079 0.921 44 H 0.140 0.860 45 H 0.155 0.845 46 H 0.136 0.864 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.162 -5.458 20.430 21.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.062 3.938 3 H 0.098 0.902 4 N -0.385 5.385 5 C 0.401 3.599 6 O -0.525 6.525 7 N -0.368 5.368 8 C 0.078 3.922 9 C 0.004 3.996 10 C -0.538 4.538 11 H 0.081 0.919 12 C -0.174 4.174 13 N -0.545 5.545 14 Si 0.775 3.225 15 H -0.205 1.205 16 H -0.217 1.217 17 H -0.188 1.188 18 C -0.216 4.216 19 C -0.195 4.195 20 C -0.099 4.099 21 H 0.145 0.855 22 C -0.020 4.020 23 O -0.230 6.230 24 C 0.042 3.958 25 C -0.169 4.169 26 C -0.104 4.104 27 C -0.175 4.175 28 C -0.095 4.095 29 C -0.168 4.168 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.112 0.888 33 H 0.237 0.763 34 H 0.238 0.762 35 H 0.042 0.958 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.158 0.842 43 H 0.097 0.903 44 H 0.158 0.842 45 H 0.172 0.828 46 H 0.154 0.846 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 0.222 -4.470 20.448 20.932 hybrid contribution -0.810 -0.576 -1.218 1.572 sum -0.588 -5.046 19.230 19.890 Atomic orbital electron populations 1.22194 0.92856 1.03514 1.03166 1.20725 0.94790 0.96666 0.81643 0.90166 1.45021 1.63474 1.10964 1.19023 1.16106 0.78234 0.84957 0.80570 1.90814 1.65543 1.14616 1.81566 1.44898 1.62549 1.11671 1.17682 1.20311 0.93643 0.92766 0.85482 1.19093 0.88357 0.97314 0.94794 1.20591 1.14038 0.99595 1.19555 0.91900 1.25680 0.99328 0.95958 0.96449 1.70113 1.36919 1.14634 1.32834 0.85695 0.79651 0.79664 0.77452 1.20526 1.21728 1.18821 1.23018 1.00321 0.97353 1.00900 1.22399 1.04880 0.96828 0.95383 1.21879 0.90428 0.97742 0.99854 0.85512 1.24145 0.88776 0.88718 1.00332 1.86806 1.14497 1.49364 1.72351 1.19763 0.88896 0.90100 0.97087 1.20541 0.88770 1.01568 1.06003 1.21160 0.99949 0.92415 0.96881 1.21297 0.96012 0.97460 1.02774 1.20429 0.92568 0.99033 0.97516 1.20769 0.95965 0.94059 1.06054 0.93924 0.90404 0.88779 0.76255 0.76156 0.95767 0.95041 0.93314 0.89595 0.89709 0.91757 0.91210 0.84184 0.90344 0.84192 0.82756 0.84605 0.87155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.73 9.25 71.98 0.67 -2.06 16 2 C 0.17 3.75 2.68 44.99 0.12 3.87 16 3 H 0.08 2.29 6.96 -2.39 -0.02 2.27 16 4 N -0.73 -19.95 4.35 -457.82 -1.99 -21.94 16 5 C 0.70 26.78 8.57 179.06 1.53 28.31 16 6 O -0.64 -29.54 15.70 -3.98 -0.06 -29.60 16 7 N -0.72 -28.52 5.39 -478.53 -2.58 -31.10 16 8 C 0.20 9.48 5.57 86.38 0.48 9.96 16 9 C 0.01 0.24 1.53 -52.93 -0.08 0.16 16 10 C -0.50 -25.26 8.16 25.60 0.21 -25.05 16 11 H 0.06 3.06 7.82 -2.91 -0.02 3.04 16 12 C 0.03 1.40 5.41 84.65 0.46 1.86 16 13 N -0.91 -51.27 12.85 21.45 0.28 -50.99 16 14 Si 0.95 41.83 29.54 68.60 2.03 43.86 16 15 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 16 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 17 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 18 C -0.18 -7.24 9.93 30.62 0.30 -6.94 16 19 C -0.16 -7.21 9.40 30.62 0.29 -6.92 16 20 C -0.08 -1.46 3.07 -10.66 -0.03 -1.49 16 21 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 22 C 0.05 0.84 6.49 72.57 0.47 1.32 16 23 O -0.32 -6.89 11.10 -95.09 -1.06 -7.94 16 24 C 0.09 2.06 7.04 22.68 0.16 2.22 16 25 C -0.15 -3.28 10.06 22.45 0.23 -3.05 16 26 C -0.09 -1.76 10.01 22.21 0.22 -1.54 16 27 C -0.16 -3.67 10.07 22.31 0.22 -3.45 16 28 C -0.08 -2.02 9.93 22.18 0.22 -1.80 16 29 C -0.17 -4.02 5.21 -19.53 -0.10 -4.12 16 30 H 0.04 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.08 1.04 7.48 -2.39 -0.02 1.02 16 32 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.40 9.28 6.97 -92.71 -0.65 8.63 16 34 H 0.40 14.73 8.05 -92.70 -0.75 13.99 16 35 H 0.02 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.03 1.45 8.09 -2.39 -0.02 1.43 16 37 H 0.26 14.11 8.32 -92.71 -0.77 13.34 16 38 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 39 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 40 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 41 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 42 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.08 1.16 6.12 -2.39 -0.01 1.15 16 44 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 45 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 46 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 47 H 0.11 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -67.81 387.94 1.58 -66.24 By element: Atomic # 1 Polarization: 40.61 SS G_CDS: -0.40 Total: 40.21 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 5.37 Total: -8.73 kcal Atomic # 7 Polarization: -99.73 SS G_CDS: -4.30 Total: -104.03 kcal Atomic # 8 Polarization: -36.42 SS G_CDS: -1.12 Total: -37.54 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -67.81 1.58 -66.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373793362.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.005 kcal (2) G-P(sol) polarization free energy of solvation -67.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds