Wall clock time and date at job start Tue Mar 31 2020 17:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47236 * 2 1 4 4 C 1.36937 * 120.00133 * 82.58905 * 3 2 1 5 5 H 1.07992 * 120.00285 * 170.81733 * 4 3 2 6 6 C 1.38818 * 119.99701 * 350.81810 * 4 3 2 7 7 N 1.31615 * 120.00360 * 1.41050 * 6 4 3 8 8 Si 1.86799 * 119.99643 * 181.40932 * 6 4 3 9 9 H 1.48496 * 109.47457 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47056 * 120.00012 * 8 6 4 11 11 H 1.48508 * 109.47164 * 239.99761 * 8 6 4 12 12 C 1.46502 * 120.00009 * 262.58719 * 3 2 1 13 13 H 1.09001 * 109.47150 * 175.12383 * 12 3 2 14 14 C 1.53005 * 109.46778 * 55.12511 * 12 3 2 15 15 C 1.50693 * 109.47100 * 295.12507 * 12 3 2 16 16 O 1.21285 * 120.00058 * 8.71263 * 15 12 3 17 17 N 1.34773 * 119.99979 * 188.71790 * 15 12 3 18 18 C 1.46510 * 120.00359 * 179.97438 * 17 15 12 19 19 H 1.08998 * 109.46533 * 324.99858 * 18 17 15 20 20 C 1.53000 * 109.47030 * 84.99803 * 18 17 15 21 21 C 1.50697 * 109.47177 * 204.99796 * 18 17 15 22 22 C 1.33994 * 124.91983 * 139.99912 * 21 18 17 23 23 C 1.46785 * 106.18629 * 179.97438 * 22 21 18 24 24 C 1.39404 * 134.37509 * 180.02562 * 23 22 21 25 25 C 1.36730 * 119.71921 * 179.97438 * 24 23 22 26 26 C 1.38740 * 120.41821 * 359.97438 * 25 24 23 27 27 C 1.37844 * 120.68709 * 0.02806 * 26 25 24 28 28 C 1.38951 * 119.81492 * 359.97438 * 27 26 25 29 29 O 1.34450 * 124.92593 * 319.69808 * 21 18 17 30 30 H 1.09004 * 109.47191 * 186.06994 * 1 2 3 31 31 H 1.09000 * 109.46767 * 306.06619 * 1 2 3 32 32 H 1.08996 * 109.47311 * 66.06108 * 1 2 3 33 33 H 1.08998 * 109.46959 * 240.00182 * 2 1 3 34 34 H 1.09004 * 109.47029 * 120.00522 * 2 1 3 35 35 H 0.96995 * 120.00135 * 180.02562 * 7 6 4 36 36 H 1.08998 * 109.47275 * 59.99875 * 14 12 3 37 37 H 1.09002 * 109.46461 * 179.97438 * 14 12 3 38 38 H 1.09001 * 109.47175 * 299.99857 * 14 12 3 39 39 H 0.97002 * 120.00596 * 359.97438 * 17 15 12 40 40 H 1.08998 * 109.47144 * 180.02562 * 20 18 17 41 41 H 1.09002 * 109.46959 * 300.00176 * 20 18 17 42 42 H 1.09001 * 109.47042 * 60.00230 * 20 18 17 43 43 H 1.08001 * 126.91144 * 359.96447 * 22 21 18 44 44 H 1.08005 * 120.13641 * 359.97438 * 24 23 22 45 45 H 1.08003 * 119.79179 * 180.02562 * 25 24 23 46 46 H 1.08003 * 119.65998 * 180.02562 * 26 25 24 47 47 H 1.07993 * 120.09737 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1024 2.0777 1.1760 5 1 2.5977 3.0370 1.2012 6 6 1.5508 1.5507 2.3357 7 7 0.9716 0.3691 2.3111 8 14 1.6308 2.5185 3.9315 9 1 2.3284 3.8077 3.6941 10 1 0.2534 2.7839 4.4190 11 1 2.3736 1.7333 4.9499 12 6 2.4169 2.0172 -1.2581 13 1 2.6674 3.0619 -1.0737 14 6 1.2611 1.9386 -2.2577 15 6 3.6187 1.3046 -1.8227 16 8 3.9995 0.2677 -1.3218 17 7 4.2704 1.8195 -2.8841 18 6 5.4391 1.1269 -3.4326 19 1 5.9974 0.6585 -2.6220 20 6 4.9786 0.0540 -4.4214 21 6 6.3230 2.1191 -4.1436 22 6 7.6621 2.1236 -4.0982 23 6 8.0959 3.2531 -4.9293 24 6 9.3354 3.7840 -5.2827 25 6 9.3960 4.8777 -6.1010 26 6 8.2323 5.4610 -6.5813 27 6 6.9977 4.9501 -6.2426 28 6 6.9139 3.8392 -5.4122 29 8 5.8823 3.1244 -4.9200 30 1 -0.3634 -1.0219 0.1087 31 1 -0.3633 0.6050 0.8307 32 1 -0.3634 0.4170 -0.9392 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.5859 0.0010 3.1213 36 1 0.3919 2.4541 -1.8494 37 1 1.5575 2.4123 -3.1936 38 1 1.0106 0.8939 -2.4421 39 1 3.9657 2.6486 -3.2849 40 1 5.8481 -0.4615 -4.8291 41 1 4.3393 -0.6636 -3.9071 42 1 4.4203 0.5225 -5.2319 43 1 8.2952 1.4348 -3.5586 44 1 10.2441 3.3332 -4.9118 45 1 10.3557 5.2898 -6.3760 46 1 8.2944 6.3244 -7.2272 47 1 6.0980 5.4119 -6.6215 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411218279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:38 Heat of formation + Delta-G solvation = 32.046206 kcal Electronic energy + Delta-G solvation = -28282.633082 eV Core-core repulsion = 24433.450938 eV Total energy + Delta-G solvation = -3849.182144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.70250 -39.39396 -38.14752 -36.23943 -35.04034 -33.03326 -32.34970 -30.83847 -30.65664 -29.50058 -28.68731 -28.38176 -24.64696 -24.08102 -23.10948 -22.70556 -21.76827 -21.12307 -20.50913 -19.31601 -17.59762 -17.41223 -16.79941 -16.43276 -16.33066 -15.73687 -15.20613 -14.87120 -14.52716 -14.30240 -13.99005 -13.76245 -13.46746 -13.31692 -13.25197 -13.05491 -12.69036 -12.48733 -12.25318 -12.06370 -12.01666 -11.83583 -11.68290 -11.48080 -11.20587 -11.18016 -10.92992 -10.68626 -10.62328 -10.34708 -10.30283 -9.83978 -9.61133 -9.44406 -8.97302 -8.88106 -8.80636 -8.37537 -8.23704 -6.78559 -5.54546 -3.06567 0.64799 1.10922 2.10169 2.42154 3.34802 3.39087 3.45153 3.46793 3.48956 3.52496 4.11402 4.41323 4.50763 4.67084 4.84086 4.88390 5.00193 5.07775 5.13134 5.23515 5.35339 5.43473 5.47059 5.54629 5.59868 5.66063 5.83265 5.93098 5.93870 5.99121 5.99922 6.14051 6.16661 6.19157 6.24792 6.39480 6.51882 6.69520 6.78869 6.89146 6.99349 7.18478 7.27146 7.45843 7.68940 7.90250 8.09845 8.32191 8.56183 8.86801 9.34015 9.91650 10.33715 11.35382 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018193 B = 0.002666 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.653996 B =10500.323151 C =11091.093868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.177 3.823 3 N -0.573 5.573 4 C -0.243 4.243 5 H 0.073 0.927 6 C -0.007 4.007 7 N -0.901 5.901 8 Si 0.911 3.089 9 H -0.281 1.281 10 H -0.291 1.291 11 H -0.291 1.291 12 C 0.160 3.840 13 H 0.084 0.916 14 C -0.152 4.152 15 C 0.493 3.507 16 O -0.521 6.521 17 N -0.740 5.740 18 C 0.220 3.780 19 H 0.116 0.884 20 C -0.161 4.161 21 C 0.040 3.960 22 C -0.201 4.201 23 C -0.127 4.127 24 C -0.072 4.072 25 C -0.138 4.138 26 C -0.097 4.097 27 C -0.105 4.105 28 C 0.052 3.948 29 O -0.188 6.188 30 H 0.016 0.984 31 H 0.086 0.914 32 H 0.001 0.999 33 H 0.006 0.994 34 H 0.096 0.904 35 H 0.248 0.752 36 H 0.066 0.934 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.399 0.601 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.060 0.940 43 H 0.160 0.840 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.134 0.866 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.708 6.928 -19.194 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.053 3.947 3 N -0.291 5.291 4 C -0.373 4.373 5 H 0.091 0.909 6 C -0.203 4.203 7 N -0.549 5.549 8 Si 0.742 3.258 9 H -0.206 1.206 10 H -0.218 1.218 11 H -0.218 1.218 12 C 0.046 3.954 13 H 0.102 0.898 14 C -0.211 4.211 15 C 0.278 3.722 16 O -0.394 6.394 17 N -0.396 5.396 18 C 0.115 3.885 19 H 0.134 0.866 20 C -0.219 4.219 21 C -0.008 4.008 22 C -0.220 4.220 23 C -0.128 4.128 24 C -0.090 4.090 25 C -0.156 4.156 26 C -0.116 4.116 27 C -0.124 4.124 28 C 0.005 3.995 29 O -0.089 6.089 30 H 0.036 0.964 31 H 0.104 0.896 32 H 0.020 0.980 33 H 0.025 0.975 34 H 0.114 0.886 35 H 0.059 0.941 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.233 0.767 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.178 0.822 44 H 0.145 0.855 45 H 0.146 0.854 46 H 0.152 0.848 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 12.596 6.105 -18.636 23.307 hybrid contribution 0.135 0.822 0.603 1.028 sum 12.731 6.927 -18.033 23.136 Atomic orbital electron populations 1.22525 0.99433 0.98753 0.98956 1.20886 0.91629 0.83418 0.98775 1.44013 1.72924 1.11792 1.00419 1.19406 1.30251 1.01283 0.86309 0.90949 1.24819 0.99953 0.97359 0.98132 1.70320 1.42123 1.16544 1.25924 0.86065 0.77128 0.78944 0.83671 1.20644 1.21770 1.21838 1.20214 0.90214 0.96312 0.88637 0.89785 1.22258 0.99376 1.02190 0.97319 1.23132 0.85389 0.85994 0.77677 1.90639 1.66517 1.23500 1.58748 1.46526 1.30595 1.28397 1.34109 1.19527 0.86131 0.88345 0.94545 0.86621 1.22213 1.02190 0.98471 0.99037 1.22604 0.93943 0.90032 0.94247 1.22241 0.93761 1.00872 1.05154 1.19951 0.94200 0.97576 1.01071 1.20299 0.95798 0.95785 0.97112 1.20772 0.98681 0.96890 0.99244 1.20920 0.91115 0.99799 0.99722 1.19967 0.99076 0.94341 0.99004 1.19652 0.85106 0.95588 0.99164 1.83927 1.34322 1.36687 1.54009 0.96444 0.89585 0.98041 0.97541 0.88639 0.94097 0.91514 0.93715 0.92465 0.76655 0.91546 0.90494 0.92045 0.82224 0.85535 0.85421 0.84844 0.84998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.08 37.16 0.34 -3.02 16 2 C 0.18 4.57 4.26 -4.04 -0.02 4.55 16 3 N -0.57 -14.38 2.23 -166.98 -0.37 -14.75 16 4 C -0.24 -6.62 9.75 -15.06 -0.15 -6.76 16 5 H 0.07 1.91 7.69 -52.49 -0.40 1.50 16 6 C -0.01 -0.19 5.19 -17.43 -0.09 -0.28 16 7 N -0.90 -25.53 7.23 55.49 0.40 -25.13 16 8 Si 0.91 21.91 29.55 -169.99 -5.02 16.89 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 C 0.16 3.23 3.09 -69.08 -0.21 3.01 16 13 H 0.08 1.60 7.81 -51.93 -0.41 1.20 16 14 C -0.15 -2.61 8.15 37.16 0.30 -2.31 16 15 C 0.49 9.50 6.88 -10.99 -0.08 9.43 16 16 O -0.52 -12.07 14.36 5.55 0.08 -11.99 16 17 N -0.74 -10.98 5.07 -54.93 -0.28 -11.25 16 18 C 0.22 2.92 3.01 -69.08 -0.21 2.71 16 19 H 0.12 1.66 7.55 -51.93 -0.39 1.27 16 20 C -0.16 -1.91 9.47 37.16 0.35 -1.56 16 21 C 0.04 0.50 6.05 -35.80 -0.22 0.28 16 22 C -0.20 -2.33 10.99 -37.62 -0.41 -2.75 16 23 C -0.13 -1.48 6.40 -105.16 -0.67 -2.15 16 24 C -0.07 -0.67 10.05 -39.69 -0.40 -1.07 16 25 C -0.14 -1.08 9.98 -39.94 -0.40 -1.48 16 26 C -0.10 -0.76 10.01 -39.54 -0.40 -1.15 16 27 C -0.11 -1.00 10.07 -39.46 -0.40 -1.40 16 28 C 0.05 0.63 7.42 -38.47 -0.29 0.34 16 29 O -0.19 -2.40 10.19 3.92 0.04 -2.36 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 2.33 5.97 -51.93 -0.31 2.02 16 32 H 0.00 0.01 6.44 -51.93 -0.33 -0.32 16 33 H 0.01 0.16 6.41 -51.93 -0.33 -0.17 16 34 H 0.10 2.81 5.96 -51.93 -0.31 2.50 16 35 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 36 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.06 1.05 6.61 -51.93 -0.34 0.70 16 39 H 0.40 5.17 8.28 -40.82 -0.34 4.83 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.16 1.53 8.06 -52.49 -0.42 1.11 16 44 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 45 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 46 H 0.13 0.65 8.06 -52.48 -0.42 0.23 16 47 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 LS Contribution 379.96 15.07 5.73 5.73 Total: -1.00 -31.94 379.96 -9.32 -41.26 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.95 Total: 5.22 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -2.94 Total: -3.60 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.25 Total: -51.14 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.12 Total: -14.36 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.94 -9.32 -41.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411218279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.305 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds