Wall clock time and date at job start Tue Mar 31 2020 17:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46498 * 109.47236 * 2 1 4 4 C 1.36937 * 120.00133 * 82.58905 * 3 2 1 5 5 H 1.07992 * 120.00285 * 170.81733 * 4 3 2 6 6 C 1.38818 * 119.99701 * 350.81810 * 4 3 2 7 7 N 1.31615 * 120.00360 * 1.41050 * 6 4 3 8 8 Si 1.86799 * 119.99643 * 181.40932 * 6 4 3 9 9 H 1.48496 * 109.47457 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47056 * 120.00012 * 8 6 4 11 11 H 1.48508 * 109.47164 * 239.99761 * 8 6 4 12 12 C 1.46502 * 120.00009 * 262.58719 * 3 2 1 13 13 H 1.09001 * 109.47150 * 175.12383 * 12 3 2 14 14 C 1.53005 * 109.46778 * 55.12511 * 12 3 2 15 15 C 1.50693 * 109.47100 * 295.12507 * 12 3 2 16 16 O 1.21285 * 120.00058 * 8.71263 * 15 12 3 17 17 N 1.34773 * 119.99979 * 188.71790 * 15 12 3 18 18 C 1.46510 * 120.00359 * 179.97438 * 17 15 12 19 19 H 1.08998 * 109.46533 * 324.99858 * 18 17 15 20 20 C 1.53000 * 109.47030 * 84.99803 * 18 17 15 21 21 C 1.50697 * 109.47177 * 204.99796 * 18 17 15 22 22 C 1.33994 * 124.91983 * 139.99912 * 21 18 17 23 23 C 1.46785 * 106.18629 * 179.97438 * 22 21 18 24 24 C 1.39404 * 134.37509 * 180.02562 * 23 22 21 25 25 C 1.36730 * 119.71921 * 179.97438 * 24 23 22 26 26 C 1.38740 * 120.41821 * 359.97438 * 25 24 23 27 27 C 1.37844 * 120.68709 * 0.02806 * 26 25 24 28 28 C 1.38951 * 119.81492 * 359.97438 * 27 26 25 29 29 O 1.34450 * 124.92593 * 319.69808 * 21 18 17 30 30 H 1.09004 * 109.47191 * 186.06994 * 1 2 3 31 31 H 1.09000 * 109.46767 * 306.06619 * 1 2 3 32 32 H 1.08996 * 109.47311 * 66.06108 * 1 2 3 33 33 H 1.08998 * 109.46959 * 240.00182 * 2 1 3 34 34 H 1.09004 * 109.47029 * 120.00522 * 2 1 3 35 35 H 0.96995 * 120.00135 * 180.02562 * 7 6 4 36 36 H 1.08998 * 109.47275 * 59.99875 * 14 12 3 37 37 H 1.09002 * 109.46461 * 179.97438 * 14 12 3 38 38 H 1.09001 * 109.47175 * 299.99857 * 14 12 3 39 39 H 0.97002 * 120.00596 * 359.97438 * 17 15 12 40 40 H 1.08998 * 109.47144 * 180.02562 * 20 18 17 41 41 H 1.09002 * 109.46959 * 300.00176 * 20 18 17 42 42 H 1.09001 * 109.47042 * 60.00230 * 20 18 17 43 43 H 1.08001 * 126.91144 * 359.96447 * 22 21 18 44 44 H 1.08005 * 120.13641 * 359.97438 * 24 23 22 45 45 H 1.08003 * 119.79179 * 180.02562 * 25 24 23 46 46 H 1.08003 * 119.65998 * 180.02562 * 26 25 24 47 47 H 1.07993 * 120.09737 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1024 2.0777 1.1760 5 1 2.5977 3.0370 1.2012 6 6 1.5508 1.5507 2.3357 7 7 0.9716 0.3691 2.3111 8 14 1.6308 2.5185 3.9315 9 1 2.3284 3.8077 3.6941 10 1 0.2534 2.7839 4.4190 11 1 2.3736 1.7333 4.9499 12 6 2.4169 2.0172 -1.2581 13 1 2.6674 3.0619 -1.0737 14 6 1.2611 1.9386 -2.2577 15 6 3.6187 1.3046 -1.8227 16 8 3.9995 0.2677 -1.3218 17 7 4.2704 1.8195 -2.8841 18 6 5.4391 1.1269 -3.4326 19 1 5.9974 0.6585 -2.6220 20 6 4.9786 0.0540 -4.4214 21 6 6.3230 2.1191 -4.1436 22 6 7.6621 2.1236 -4.0982 23 6 8.0959 3.2531 -4.9293 24 6 9.3354 3.7840 -5.2827 25 6 9.3960 4.8777 -6.1010 26 6 8.2323 5.4610 -6.5813 27 6 6.9977 4.9501 -6.2426 28 6 6.9139 3.8392 -5.4122 29 8 5.8823 3.1244 -4.9200 30 1 -0.3634 -1.0219 0.1087 31 1 -0.3633 0.6050 0.8307 32 1 -0.3634 0.4170 -0.9392 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.5859 0.0010 3.1213 36 1 0.3919 2.4541 -1.8494 37 1 1.5575 2.4123 -3.1936 38 1 1.0106 0.8939 -2.4421 39 1 3.9657 2.6486 -3.2849 40 1 5.8481 -0.4615 -4.8291 41 1 4.3393 -0.6636 -3.9071 42 1 4.4203 0.5225 -5.2319 43 1 8.2952 1.4348 -3.5586 44 1 10.2441 3.3332 -4.9118 45 1 10.3557 5.2898 -6.3760 46 1 8.2944 6.3244 -7.2272 47 1 6.0980 5.4119 -6.6215 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411218279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:19:37 Heat of formation + Delta-G solvation = 14.061718 kcal Electronic energy + Delta-G solvation = -28283.412948 eV Core-core repulsion = 24433.450938 eV Total energy + Delta-G solvation = -3849.962010 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.53707 -40.90042 -38.89737 -37.92281 -36.45559 -34.28985 -33.75265 -32.24586 -31.36133 -31.25584 -30.23087 -29.49947 -26.13929 -25.53434 -24.30001 -23.77665 -22.93423 -22.38963 -21.73655 -20.84639 -18.92265 -18.42624 -18.27284 -17.70022 -17.25414 -17.15350 -16.53129 -16.12314 -15.91289 -15.56238 -15.12210 -14.95730 -14.89801 -14.70573 -14.39452 -14.06980 -13.90355 -13.81840 -13.65771 -13.23076 -13.22563 -13.04851 -13.03891 -12.77918 -12.76583 -12.56289 -12.52668 -12.40693 -12.20907 -11.87809 -11.78865 -11.58161 -11.37441 -11.14717 -10.68396 -10.29405 -10.15629 -9.60302 -9.17093 -8.76347 -7.61761 -5.14409 -0.09793 0.39424 1.24285 1.48932 1.50252 1.55558 1.59376 1.82470 2.19751 2.55706 2.77441 3.22908 3.38859 3.64138 3.69103 3.92466 3.98310 4.08606 4.13118 4.16900 4.25146 4.35246 4.39349 4.45331 4.52676 4.64243 4.70080 4.77178 4.82403 4.91420 4.92707 5.04383 5.11183 5.20058 5.22433 5.27768 5.33175 5.35582 5.40586 5.45966 5.47236 5.52114 5.59169 5.75424 5.98504 6.16355 6.28341 6.46147 6.58867 7.25793 7.38147 7.94480 8.32703 9.27313 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018193 B = 0.002666 C = 0.002524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.653996 B =10500.323151 C =11091.093868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.191 3.809 3 N -0.590 5.590 4 C -0.254 4.254 5 H 0.077 0.923 6 C -0.059 4.059 7 N -0.923 5.923 8 Si 0.972 3.028 9 H -0.269 1.269 10 H -0.291 1.291 11 H -0.300 1.300 12 C 0.151 3.849 13 H 0.096 0.904 14 C -0.140 4.140 15 C 0.499 3.501 16 O -0.566 6.566 17 N -0.722 5.722 18 C 0.223 3.777 19 H 0.102 0.898 20 C -0.153 4.153 21 C 0.024 3.976 22 C -0.199 4.199 23 C -0.153 4.153 24 C -0.082 4.082 25 C -0.135 4.135 26 C -0.089 4.089 27 C -0.119 4.119 28 C 0.027 3.973 29 O -0.199 6.199 30 H 0.020 0.980 31 H 0.059 0.941 32 H 0.021 0.979 33 H 0.006 0.994 34 H 0.054 0.946 35 H 0.241 0.759 36 H 0.062 0.938 37 H 0.085 0.915 38 H 0.044 0.956 39 H 0.411 0.589 40 H 0.085 0.915 41 H 0.056 0.944 42 H 0.069 0.931 43 H 0.173 0.827 44 H 0.143 0.857 45 H 0.159 0.841 46 H 0.167 0.833 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.182 9.293 -21.557 27.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.066 3.934 3 N -0.310 5.310 4 C -0.383 4.383 5 H 0.095 0.905 6 C -0.253 4.253 7 N -0.572 5.572 8 Si 0.801 3.199 9 H -0.194 1.194 10 H -0.218 1.218 11 H -0.227 1.227 12 C 0.039 3.961 13 H 0.114 0.886 14 C -0.199 4.199 15 C 0.284 3.716 16 O -0.443 6.443 17 N -0.376 5.376 18 C 0.118 3.882 19 H 0.120 0.880 20 C -0.211 4.211 21 C -0.024 4.024 22 C -0.219 4.219 23 C -0.154 4.154 24 C -0.100 4.100 25 C -0.153 4.153 26 C -0.106 4.106 27 C -0.137 4.137 28 C -0.020 4.020 29 O -0.101 6.101 30 H 0.039 0.961 31 H 0.078 0.922 32 H 0.040 0.960 33 H 0.024 0.976 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.063 0.937 39 H 0.248 0.752 40 H 0.104 0.896 41 H 0.075 0.925 42 H 0.088 0.912 43 H 0.191 0.809 44 H 0.161 0.839 45 H 0.176 0.824 46 H 0.185 0.815 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 14.094 8.524 -21.075 26.748 hybrid contribution -0.145 0.198 1.166 1.192 sum 13.949 8.722 -19.909 25.827 Atomic orbital electron populations 1.22293 0.98420 0.98565 0.98792 1.20528 0.92293 0.83971 0.96609 1.44102 1.73747 1.11475 1.01694 1.19720 1.29740 1.01479 0.87377 0.90491 1.25540 1.00405 0.98373 1.00942 1.70531 1.42969 1.17700 1.26000 0.85114 0.76777 0.78014 0.79949 1.19396 1.21808 1.22713 1.20523 0.91442 0.96483 0.87674 0.88634 1.22113 0.97866 1.01773 0.98170 1.22683 0.85252 0.85308 0.78333 1.90630 1.67750 1.25452 1.60486 1.46202 1.30384 1.28418 1.32640 1.19489 0.85269 0.88872 0.94524 0.88030 1.22135 1.02727 0.97668 0.98581 1.22301 0.93943 0.90694 0.95500 1.22528 0.93735 1.00970 1.04628 1.20216 0.95221 0.98005 1.01929 1.20638 0.95618 0.96378 0.97402 1.21217 1.00215 0.95943 0.97904 1.21406 0.90304 1.00064 0.98875 1.20354 1.00657 0.93887 0.98841 1.20135 0.85040 0.96593 1.00260 1.83866 1.34957 1.36929 1.54380 0.96069 0.92201 0.95997 0.97587 0.92751 0.94852 0.91935 0.89601 0.93734 0.75243 0.89618 0.92474 0.91184 0.80935 0.83894 0.82355 0.81516 0.83485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.01 9.08 71.98 0.65 -5.36 16 2 C 0.19 10.13 4.26 86.38 0.37 10.49 16 3 N -0.59 -30.04 2.23 -682.20 -1.52 -31.56 16 4 C -0.25 -13.94 9.75 84.03 0.82 -13.12 16 5 H 0.08 4.05 7.69 -2.91 -0.02 4.03 16 6 C -0.06 -3.32 5.19 84.86 0.44 -2.88 16 7 N -0.92 -53.95 7.23 21.65 0.16 -53.80 16 8 Si 0.97 45.77 29.55 68.60 2.03 47.80 16 9 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 10 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 11 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 12 C 0.15 6.00 3.09 44.24 0.14 6.14 16 13 H 0.10 3.53 7.81 -2.39 -0.02 3.52 16 14 C -0.14 -4.58 8.15 71.98 0.59 -4.00 16 15 C 0.50 19.23 6.88 87.66 0.60 19.83 16 16 O -0.57 -26.94 14.36 -3.04 -0.04 -26.98 16 17 N -0.72 -20.92 5.07 -446.09 -2.26 -23.18 16 18 C 0.22 5.88 3.01 44.24 0.13 6.01 16 19 H 0.10 2.99 7.55 -2.39 -0.02 2.97 16 20 C -0.15 -3.56 9.47 71.98 0.68 -2.88 16 21 C 0.02 0.57 6.05 24.72 0.15 0.72 16 22 C -0.20 -4.50 10.99 23.54 0.26 -4.25 16 23 C -0.15 -3.36 6.40 -20.21 -0.13 -3.49 16 24 C -0.08 -1.36 10.05 22.20 0.22 -1.13 16 25 C -0.14 -1.65 9.98 22.04 0.22 -1.43 16 26 C -0.09 -1.06 10.01 22.30 0.22 -0.84 16 27 C -0.12 -1.99 10.07 22.35 0.23 -1.76 16 28 C 0.03 0.60 7.42 22.99 0.17 0.77 16 29 O -0.20 -4.92 10.19 -8.89 -0.09 -5.01 16 30 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.06 3.31 5.97 -2.39 -0.01 3.29 16 32 H 0.02 0.95 6.44 -2.39 -0.02 0.93 16 33 H 0.01 0.31 6.41 -2.39 -0.02 0.29 16 34 H 0.05 3.35 5.96 -2.39 -0.01 3.33 16 35 H 0.24 13.81 8.31 -92.71 -0.77 13.04 16 36 H 0.06 2.11 8.11 -2.39 -0.02 2.09 16 37 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.04 1.57 6.61 -2.39 -0.02 1.56 16 39 H 0.41 10.03 8.28 -92.71 -0.77 9.27 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.17 3.21 8.06 -2.91 -0.02 3.18 16 44 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 45 H 0.16 0.93 8.06 -2.91 -0.02 0.91 16 46 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 47 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -71.57 379.96 4.24 -67.33 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: 0.21 Total: 22.57 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 5.76 Total: 2.83 kcal Atomic # 7 Polarization: -104.91 SS G_CDS: -3.63 Total: -108.54 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.13 Total: -31.99 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -71.57 4.24 -67.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411218279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.388 kcal (2) G-P(sol) polarization free energy of solvation -71.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds